Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:49509902-50399911

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Ncam1 9 49502136 to 49798925 296789 - protein coding gene neural cell adhesion molecule 1
Tssr89449 9 49509857 to 49509916 59 - TSS region transcription start site region 89449
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
D9Mit299 9 49514376 to 49514460 84 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 299
Tssr89450 9 49515263 to 49515266 3 - TSS region transcription start site region 89450
Tssr89451 9 49517559 to 49517578 19 - TSS region transcription start site region 89451
Gm11149 9 49518288 to 49568025 49737 + antisense lncRNA gene predicted gene 11149
Tssr85015 9 49518312 to 49518332 20 + TSS region transcription start site region 85015
Tssr85016 9 49518337 to 49518340 3 + TSS region transcription start site region 85016
Actd4 9 49523263 to 49523557 294 QTL activity-distance traveled 4
D9Mit94 9 49523263 to 49523557 294 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 94
Tssr89452 9 49529524 to 49529535 11 - TSS region transcription start site region 89452
D9Mit229 9 49541121 to 49541246 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 229
Cq5 9 49541121 to 49541246 125 QTL cholesterol QTL 5
Tssr89453 9 49554512 to 49554529 17 - TSS region transcription start site region 89453
Tssr89454 9 49554575 to 49554596 21 - TSS region transcription start site region 89454
Tssr85017 9 49559225 to 49559228 3 + TSS region transcription start site region 85017
Tssr89455 9 49568469 to 49568505 36 - TSS region transcription start site region 89455
Tssr89456 9 49568518 to 49568533 15 - TSS region transcription start site region 89456
Tssr89457 9 49570824 to 49570850 26 - TSS region transcription start site region 89457
D9Mit171 9 49599872 to 49600121 249 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 171
Hts 9 49599872 to 49600121 249 QTL hypothermia sensitivity
Tssr89458 9 49630289 to 49630292 3 - TSS region transcription start site region 89458
Tssr89459 9 49673942 to 49673944 2 - TSS region transcription start site region 89459
Tssr89460 9 49714158 to 49714169 11 - TSS region transcription start site region 89460
Tssr89461 9 49715960 to 49715987 27 - TSS region transcription start site region 89461
Tssr89462 9 49716058 to 49716079 21 - TSS region transcription start site region 89462
Tssr89463 9 49718740 to 49718745 5 - TSS region transcription start site region 89463
Tssr89464 9 49756422 to 49756425 3 - TSS region transcription start site region 89464
Tssr89465 9 49765917 to 49765921 4 - TSS region transcription start site region 89465
D9Mit46 9 49782040 to 49782153 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 46
Tssr89466 9 49794457 to 49794461 4 - TSS region transcription start site region 89466
Cpgi21723 9 49796656 to 49799162 2506 CpG island CpG island 21723
Tssr89467 9 49798821 to 49798855 34 - TSS region transcription start site region 89467
Tssr89468 9 49798905 to 49798931 26 - TSS region transcription start site region 89468
Tssr2865 9 49798947 to 49798958 11 - TSS region transcription start site region 2865
Gm25633 9 49825869 to 49825975 106 - snRNA gene predicted gene, 25633
D9Mit131.1 9 49912510 to 49912656 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.1
D9Mit131 9 49912652 to 49912799 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131
D9Mit131.2 9 49912746 to 49912855 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.2
Tssr85018 9 49954868 to 49954891 23 + TSS region transcription start site region 85018
Gm47543 9 49954878 to 49956554 1676 + lincRNA gene predicted gene, 47543
Tssr85019 9 49954893 to 49954900 7 + TSS region transcription start site region 85019
Tssr85020 9 49954902 to 49954911 9 + TSS region transcription start site region 85020
D9Mit162.1 9 49978195 to 49978395 200 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162.1
D9Mit162 9 49978402 to 49978536 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162
Ptnu3 9 49978402 to 49978536 134 QTL proteinuria 3
Tssr89469 9 50124332 to 50124346 14 - TSS region transcription start site region 89469
Gm8907 9 50186043 to 50187045 1002 - pseudogene predicted gene 8907
D9Mit71 9 50199725 to 50199840 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 71
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
Si5lq3 9 50199725 to 50199840 115 QTL serum IGFBP-5 level QTL 3
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
Gm4042 9 50215088 to 50215714 626 + pseudogene predicted gene 4042
2310003N18Rik 9 50232523 to 50233182 659 - lincRNA gene RIKEN cDNA 2310003N18 gene
Tssr89470 9 50233180 to 50233184 4 - TSS region transcription start site region 89470
Gm40519 9 50233531 to 50241316 7785 - lncRNA gene predicted gene, 40519
Tssr85021 9 50239730 to 50239731 1 + TSS region transcription start site region 85021
D9Mit288 9 50291649 to 50291745 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 288
Gm39336 9 50300784 to 50301817 1033 - lincRNA gene predicted gene, 39336
Rpl10-ps3 9 50344226 to 50344984 758 - pseudogene ribosomal protein L10, pseudogene 3
Tssr89471 9 50344982 to 50344984 2 - TSS region transcription start site region 89471
Gm38579 9 50390839 to 50392388 1549 - lncRNA gene predicted gene, 38579
Dxmod 9 101528921 to 49541121 -51987800 QTL doxorubicin nephropathy modifier