Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:49184902-50724911

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196 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapop7 9 36824947 to 49509211 12684264 QTL radiation-induced apoptosis 6
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Tssr2864 9 49222172 to 49222176 4 + TSS region transcription start site region 2864
D9Mit315 9 49227794 to 49227912 118 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-315
Tssr85010 9 49250485 to 49250532 47 + TSS region transcription start site region 85010
Gm4894 9 49250531 to 49280594 30063 + protein coding gene predicted gene 4894
Cpgi21721 9 49340126 to 49341228 1102 CpG island CpG island 21721
Tssr85011 9 49340353 to 49340363 10 + TSS region transcription start site region 85011
Tssr85012 9 49340383 to 49340386 3 + TSS region transcription start site region 85012
Tssr85013 9 49340387 to 49340408 21 + TSS region transcription start site region 85013
Drd2 9 49340627 to 49408177 67550 + protein coding gene dopamine receptor D2
Gm46112 9 49404408 to 49407370 2962 - lncRNA gene predicted gene, 46112
Gm46111 9 49407421 to 49410846 3425 - lncRNA gene predicted gene, 46111
Tssr89426 9 49410834 to 49410853 19 - TSS region transcription start site region 89426
Ankk1 9 49415194 to 49427021 11827 - protein coding gene ankyrin repeat and kinase domain containing 1
Ttc12 9 49436963 to 49486225 49262 - protein coding gene tetratricopeptide repeat domain 12
Tssr89427 9 49474426 to 49474440 14 - TSS region transcription start site region 89427
Cpgi21722 9 49485902 to 49486448 546 CpG island CpG island 21722
Tssr89428 9 49486166 to 49486189 23 - TSS region transcription start site region 89428
Tssr89429 9 49486191 to 49486202 11 - TSS region transcription start site region 89429
Tssr89430 9 49486209 to 49486230 21 - TSS region transcription start site region 89430
4921518B13Rik 9 49488658 to 49490361 1703 unclassified gene RIKEN cDNA 4921518B13 gene
Tssr89431 9 49490331 to 49490363 32 - TSS region transcription start site region 89431
Ncam1 9 49502136 to 49798925 296789 - protein coding gene neural cell adhesion molecule 1
Tssr89432 9 49503778 to 49503790 12 - TSS region transcription start site region 89432
Tssr89433 9 49504061 to 49504076 15 - TSS region transcription start site region 89433
Tssr89434 9 49504138 to 49504160 22 - TSS region transcription start site region 89434
Tssr89435 9 49504311 to 49504325 14 - TSS region transcription start site region 89435
Tssr89436 9 49504745 to 49504757 12 - TSS region transcription start site region 89436
Tssr89437 9 49504963 to 49504980 17 - TSS region transcription start site region 89437
D9Mit98 9 49505060 to 49505407 347 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 98
Tssr89438 9 49505154 to 49505175 21 - TSS region transcription start site region 89438
Tssr89439 9 49505197 to 49505225 28 - TSS region transcription start site region 89439
Tssr85014 9 49505264 to 49505275 11 + TSS region transcription start site region 85014
Tssr89440 9 49505373 to 49505414 41 - TSS region transcription start site region 89440
Tssr89441 9 49505433 to 49505458 25 - TSS region transcription start site region 89441
Tssr89442 9 49505486 to 49505511 25 - TSS region transcription start site region 89442
Tssr89443 9 49505514 to 49505533 19 - TSS region transcription start site region 89443
Tssr89444 9 49505544 to 49505556 12 - TSS region transcription start site region 89444
Tssr89445 9 49506901 to 49506931 30 - TSS region transcription start site region 89445
Tssr89446 9 49506937 to 49506972 35 - TSS region transcription start site region 89446
Tssr89447 9 49508625 to 49508641 16 - TSS region transcription start site region 89447
El4 9 49508998 to 67244166 17735168 QTL epilepsy 4
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
D9Mit22 9 49508998 to 49509211 213 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 22
D9Nds6 9 49509032 to 49509223 191 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 6
Tssr89448 9 49509808 to 49509839 31 - TSS region transcription start site region 89448
Tssr89449 9 49509857 to 49509916 59 - TSS region transcription start site region 89449
D9Mit299 9 49514376 to 49514460 84 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 299
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
Tssr89450 9 49515263 to 49515266 3 - TSS region transcription start site region 89450
Tssr89451 9 49517559 to 49517578 19 - TSS region transcription start site region 89451
Gm11149 9 49518288 to 49568025 49737 + antisense lncRNA gene predicted gene 11149
Tssr85015 9 49518312 to 49518332 20 + TSS region transcription start site region 85015
Tssr85016 9 49518337 to 49518340 3 + TSS region transcription start site region 85016
D9Mit94 9 49523263 to 49523557 294 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 94
Actd4 9 49523263 to 49523557 294 QTL activity-distance traveled 4
Tssr89452 9 49529524 to 49529535 11 - TSS region transcription start site region 89452
Cq5 9 49541121 to 49541246 125 QTL cholesterol QTL 5
D9Mit229 9 49541121 to 49541246 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 229
Tssr89453 9 49554512 to 49554529 17 - TSS region transcription start site region 89453
Tssr89454 9 49554575 to 49554596 21 - TSS region transcription start site region 89454
Tssr85017 9 49559225 to 49559228 3 + TSS region transcription start site region 85017
Tssr89455 9 49568469 to 49568505 36 - TSS region transcription start site region 89455
Tssr89456 9 49568518 to 49568533 15 - TSS region transcription start site region 89456
Tssr89457 9 49570824 to 49570850 26 - TSS region transcription start site region 89457
D9Mit171 9 49599872 to 49600121 249 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 171
Hts 9 49599872 to 49600121 249 QTL hypothermia sensitivity
Tssr89458 9 49630289 to 49630292 3 - TSS region transcription start site region 89458
Tssr89459 9 49673942 to 49673944 2 - TSS region transcription start site region 89459
Tssr89460 9 49714158 to 49714169 11 - TSS region transcription start site region 89460
Tssr89461 9 49715960 to 49715987 27 - TSS region transcription start site region 89461
Tssr89462 9 49716058 to 49716079 21 - TSS region transcription start site region 89462
Tssr89463 9 49718740 to 49718745 5 - TSS region transcription start site region 89463
Tssr89464 9 49756422 to 49756425 3 - TSS region transcription start site region 89464
Tssr89465 9 49765917 to 49765921 4 - TSS region transcription start site region 89465
D9Mit46 9 49782040 to 49782153 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 46
Tssr89466 9 49794457 to 49794461 4 - TSS region transcription start site region 89466
Cpgi21723 9 49796656 to 49799162 2506 CpG island CpG island 21723
Tssr89467 9 49798821 to 49798855 34 - TSS region transcription start site region 89467
Tssr89468 9 49798905 to 49798931 26 - TSS region transcription start site region 89468
Tssr2865 9 49798947 to 49798958 11 - TSS region transcription start site region 2865
Gm25633 9 49825869 to 49825975 106 - snRNA gene predicted gene, 25633
D9Mit131.1 9 49912510 to 49912656 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.1
D9Mit131 9 49912652 to 49912799 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131
D9Mit131.2 9 49912746 to 49912855 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.2
Tssr85018 9 49954868 to 49954891 23 + TSS region transcription start site region 85018
Gm47543 9 49954878 to 49956554 1676 + lincRNA gene predicted gene, 47543
Tssr85019 9 49954893 to 49954900 7 + TSS region transcription start site region 85019
Tssr85020 9 49954902 to 49954911 9 + TSS region transcription start site region 85020
D9Mit162.1 9 49978195 to 49978395 200 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162.1
D9Mit162 9 49978402 to 49978536 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162
Ptnu3 9 49978402 to 49978536 134 QTL proteinuria 3
Tssr89469 9 50124332 to 50124346 14 - TSS region transcription start site region 89469
Gm8907 9 50186043 to 50187045 1002 - pseudogene predicted gene 8907
Si5lq3 9 50199725 to 50199840 115 QTL serum IGFBP-5 level QTL 3
D9Mit71 9 50199725 to 50199840 115 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 71
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
Tglq7 9 50200000 to 51600000 1400000 QTL triglyceride QTL 7
Gm4042 9 50215088 to 50215714 626 + pseudogene predicted gene 4042
2310003N18Rik 9 50232523 to 50233182 659 - lincRNA gene RIKEN cDNA 2310003N18 gene
Tssr89470 9 50233180 to 50233184 4 - TSS region transcription start site region 89470
Gm40519 9 50233531 to 50241316 7785 - lncRNA gene predicted gene, 40519
Tssr85021 9 50239730 to 50239731 1 + TSS region transcription start site region 85021
D9Mit288 9 50291649 to 50291745 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 288
Gm39336 9 50300784 to 50301817 1033 - lincRNA gene predicted gene, 39336
Rpl10-ps3 9 50344226 to 50344984 758 - pseudogene ribosomal protein L10, pseudogene 3
Tssr89471 9 50344982 to 50344984 2 - TSS region transcription start site region 89471
Gm38579 9 50390839 to 50392388 1549 - lncRNA gene predicted gene, 38579
D9Mit172 9 50401590 to 50401731 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 172
Tssr89472 9 50430282 to 50430294 12 - TSS region transcription start site region 89472
Tssr89473 9 50430354 to 50430371 17 - TSS region transcription start site region 89473
Tssr89474 9 50447899 to 50447921 22 - TSS region transcription start site region 89474
Gm32462 9 50472164 to 50486100 13936 - lncRNA gene predicted gene, 32462
Tssr89475 9 50475709 to 50475727 18 - TSS region transcription start site region 89475
Tssr85022 9 50479125 to 50479127 2 + TSS region transcription start site region 85022
Tssr89476 9 50479529 to 50479538 9 - TSS region transcription start site region 89476
Tssr89477 9 50479582 to 50479592 10 - TSS region transcription start site region 89477
Gm9557 9 50484368 to 50485849 1481 + pseudogene predicted gene 9557
Plet1os 9 50488799 to 50504805 16006 - antisense lncRNA gene placenta expressed transcript 1, opposite strand
Tssr2866 9 50494048 to 50494057 9 + TSS region transcription start site region 2866
Tssr85023 9 50494139 to 50494146 7 + TSS region transcription start site region 85023
Tssr85024 9 50494233 to 50494272 39 + TSS region transcription start site region 85024
Tssr85025 9 50494516 to 50494533 17 + TSS region transcription start site region 85025
Plet1 9 50494525 to 50505482 10957 + protein coding gene placenta expressed transcript 1
Tssr85026 9 50496776 to 50496801 25 + TSS region transcription start site region 85026
Cpgi21724 9 50498898 to 50499144 246 CpG island CpG island 21724
Tssr85027 9 50499144 to 50499164 20 + TSS region transcription start site region 85027
Tssr85028 9 50499174 to 50499186 12 + TSS region transcription start site region 85028
Tssr85029 9 50499209 to 50499222 13 + TSS region transcription start site region 85029
Tssr85030 9 50499254 to 50499266 12 + TSS region transcription start site region 85030
Tssr85031 9 50501065 to 50501091 26 + TSS region transcription start site region 85031
Tssr85032 9 50504286 to 50504297 11 + TSS region transcription start site region 85032
Tssr85033 9 50504305 to 50504346 41 + TSS region transcription start site region 85033
Tssr85034 9 50504349 to 50504367 18 + TSS region transcription start site region 85034
Tssr85035 9 50504552 to 50504566 14 + TSS region transcription start site region 85035
Tssr89478 9 50504779 to 50504821 42 - TSS region transcription start site region 89478
Tssr85036 9 50506395 to 50506398 3 + TSS region transcription start site region 85036
Tssr89479 9 50507754 to 50507765 11 - TSS region transcription start site region 89479
Pts 9 50521617 to 50528641 7024 - protein coding gene 6-pyruvoyl-tetrahydropterin synthase
Cpgi21725 9 50528213 to 50528876 663 CpG island CpG island 21725
Tssr89480 9 50528642 to 50528698 56 - TSS region transcription start site region 89480
Tssr85037 9 50528743 to 50528773 30 + TSS region transcription start site region 85037
Gm47077 9 50528767 to 50533752 4985 + antisense lncRNA gene predicted gene, 47077
Bco2 9 50533087 to 50555181 22094 - protein coding gene beta-carotene oxygenase 2
D9Mit70 9 50550846 to 50551009 163 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 70
D9Mit70.1 9 50550899 to 50551028 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 70.1
Il18 9 50554827 to 50581840 27013 + protein coding gene interleukin 18
Tssr85038 9 50554833 to 50554848 15 + TSS region transcription start site region 85038
Tssr85039 9 50554863 to 50554948 85 + TSS region transcription start site region 85039
Tssr89481 9 50555127 to 50555151 24 - TSS region transcription start site region 89481
Tssr89482 9 50555170 to 50555183 13 - TSS region transcription start site region 89482
Tex12 9 50557148 to 50561268 4120 - protein coding gene testis expressed 12
Cpgi21726 9 50560966 to 50561686 720 CpG island CpG island 21726
Tssr89483 9 50561261 to 50561268 7 - TSS region transcription start site region 89483
Tssr89484 9 50561282 to 50561301 19 - TSS region transcription start site region 89484
Tssr89485 9 50561305 to 50561316 11 - TSS region transcription start site region 89485
Tssr89486 9 50561320 to 50561331 11 - TSS region transcription start site region 89486
Tssr85040 9 50565337 to 50565376 39 + TSS region transcription start site region 85040
Tssr85041 9 50565382 to 50565427 45 + TSS region transcription start site region 85041
Tssr2867 9 50593005 to 50593037 32 - TSS region transcription start site region 2867
Tssr89487 9 50593073 to 50593079 6 - TSS region transcription start site region 89487
Tssr85042 9 50593225 to 50593265 40 + TSS region transcription start site region 85042
Sdhd 9 50596357 to 50603812 7455 - protein coding gene succinate dehydrogenase complex, subunit D, integral membrane protein
Cpgi21727 9 50603287 to 50604437 1150 CpG island CpG island 21727
Tssr89488 9 50603792 to 50603824 32 - TSS region transcription start site region 89488
Tssr85043 9 50603892 to 50603903 11 + TSS region transcription start site region 85043
Tssr85044 9 50603907 to 50603952 45 + TSS region transcription start site region 85044
Timm8b 9 50603910 to 50605320 1410 + protein coding gene translocase of inner mitochondrial membrane 8B
Nkapd1 9 50605240 to 50617464 12224 - protein coding gene NKAP domain containing 1
Cpgi21728 9 50616565 to 50617612 1047 CpG island CpG island 21728
Tssr89489 9 50616880 to 50616932 52 - TSS region transcription start site region 89489
Tssr2868 9 50617004 to 50617020 16 - TSS region transcription start site region 2868
Tssr89490 9 50617228 to 50617289 61 - TSS region transcription start site region 89490
Tssr85045 9 50617308 to 50617361 53 + TSS region transcription start site region 85045
Pih1d2 9 50617321 to 50625000 7679 + protein coding gene PIH1 domain containing 2
Tssr89491 9 50617428 to 50617467 39 - TSS region transcription start site region 89491
Tssr85046 9 50617516 to 50617561 45 + TSS region transcription start site region 85046
Dlat 9 50634633 to 50659780 25147 - protein coding gene dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
Cpgi21729 9 50658980 to 50660083 1103 CpG island CpG island 21729
Tssr89492 9 50659464 to 50659477 13 - TSS region transcription start site region 89492
Tssr89493 9 50659481 to 50659488 7 - TSS region transcription start site region 89493
Tssr89494 9 50659493 to 50659564 71 - TSS region transcription start site region 89494
Tssr89495 9 50659570 to 50659573 3 - TSS region transcription start site region 89495
Tssr89496 9 50659790 to 50659801 11 - TSS region transcription start site region 89496
Tssr2869 9 50659932 to 50659973 41 - TSS region transcription start site region 2869
3110005L24Rik 9 50660015 to 50661527 1512 + lncRNA gene RIKEN cDNA 3110005L24 gene
Dixdc1 9 50662752 to 50739517 76765 - protein coding gene DIX domain containing 1
D9Mit27 9 50679791 to 50679965 174 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 27
D9Mit97 9 50679791 to 50679941 150 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 97
Tssr89497 9 50693780 to 50693793 13 - TSS region transcription start site region 89497
Tssr89498 9 50693800 to 50693814 14 - TSS region transcription start site region 89498
Gm39337 9 50697230 to 50717013 19783 + lncRNA gene predicted gene, 39337
Cpgi21730 9 50698431 to 50699438 1007 CpG island CpG island 21730
Tssr89499 9 50699000 to 50699028 28 - TSS region transcription start site region 89499
Dxmod 9 101528921 to 49541121 -51987800 QTL doxorubicin nephropathy modifier