Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:49030531-49500594

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp28 9 48985375 to 49042517 57142 + protein coding gene ubiquitin specific peptidase 28
Tssr85004 9 49030876 to 49030883 7 + TSS region transcription start site region 85004
Tssr85005 9 49037281 to 49037283 2 + TSS region transcription start site region 85005
Cldn25-ps 9 49047676 to 49048267 591 - pseudogene claudin 25, pseudogene
1700042D02Rik 9 49051335 to 49055465 4130 - lincRNA gene RIKEN cDNA 1700042D02 gene
Cpgi21720 9 49055441 to 49056112 671 CpG island CpG island 21720
Tssr89423 9 49055486 to 49055497 11 - TSS region transcription start site region 89423
Tssr85006 9 49055574 to 49055629 55 + TSS region transcription start site region 85006
Zw10 9 49055613 to 49078775 23162 + protein coding gene zw10 kinetochore protein
Tssr85007 9 49055635 to 49055682 47 + TSS region transcription start site region 85007
Tssr89424 9 49079358 to 49079378 20 - TSS region transcription start site region 89424
Tmprss5 9 49081260 to 49117587 36327 + protein coding gene transmembrane protease, serine 5 (spinesin)
D9Mit99 9 49095649 to 49095834 185 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 99
Tssr85008 9 49102720 to 49102752 32 + TSS region transcription start site region 85008
Tssr85009 9 49108662 to 49108665 3 + TSS region transcription start site region 85009
Tssr89425 9 49148127 to 49148141 14 - TSS region transcription start site region 89425
Tssr2864 9 49222172 to 49222176 4 + TSS region transcription start site region 2864
D9Mit315 9 49227794 to 49227912 118 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-315
Tssr85010 9 49250485 to 49250532 47 + TSS region transcription start site region 85010
Gm4894 9 49250531 to 49280594 30063 + protein coding gene predicted gene 4894
Cpgi21721 9 49340126 to 49341228 1102 CpG island CpG island 21721
Tssr85011 9 49340353 to 49340363 10 + TSS region transcription start site region 85011
Tssr85012 9 49340383 to 49340386 3 + TSS region transcription start site region 85012
Tssr85013 9 49340387 to 49340408 21 + TSS region transcription start site region 85013
Drd2 9 49340627 to 49408177 67550 + protein coding gene dopamine receptor D2
Gm46112 9 49404408 to 49407370 2962 - lncRNA gene predicted gene, 46112
Gm46111 9 49407421 to 49410846 3425 - lncRNA gene predicted gene, 46111
Tssr89426 9 49410834 to 49410853 19 - TSS region transcription start site region 89426
Ankk1 9 49415194 to 49427021 11827 - protein coding gene ankyrin repeat and kinase domain containing 1
Ttc12 9 49436963 to 49486225 49262 - protein coding gene tetratricopeptide repeat domain 12
Tssr89427 9 49474426 to 49474440 14 - TSS region transcription start site region 89427
Cpgi21722 9 49485902 to 49486448 546 CpG island CpG island 21722
Tssr89428 9 49486166 to 49486189 23 - TSS region transcription start site region 89428
Tssr89429 9 49486191 to 49486202 11 - TSS region transcription start site region 89429
Tssr89430 9 49486209 to 49486230 21 - TSS region transcription start site region 89430
4921518B13Rik 9 49488658 to 49490361 1703 unclassified gene RIKEN cDNA 4921518B13 gene
Tssr89431 9 49490331 to 49490363 32 - TSS region transcription start site region 89431