Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:4860313-7284278

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21337 9 4977605 to 4977809 204 CpG island CpG island 21337
Gm7390 9 4977959 to 4979174 1215 + pseudogene predicted gene 7390
Gm24896 9 5111399 to 5111533 134 + snoRNA gene predicted gene, 24896
Gm40508 9 5127223 to 5155287 28064 + lncRNA gene predicted gene, 40508
Gm31429 9 5157038 to 5166906 9868 + lncRNA gene predicted gene, 31429
Gm31492 9 5159386 to 5171522 12136 - lncRNA gene predicted gene, 31492
Tssr83630 9 5297999 to 5298001 2 + TSS region transcription start site region 83630
Casp1 9 5298517 to 5307265 8748 + protein coding gene caspase 1
Tssr83631 9 5298669 to 5298694 25 + TSS region transcription start site region 83631
Tssr83632 9 5298767 to 5298781 14 + TSS region transcription start site region 83632
Tssr83633 9 5299174 to 5299216 42 + TSS region transcription start site region 83633
Tssr83634 9 5299245 to 5299262 17 + TSS region transcription start site region 83634
Tssr83635 9 5299267 to 5299283 16 + TSS region transcription start site region 83635
Tssr83636 9 5299290 to 5299307 17 + TSS region transcription start site region 83636
Tssr83637 9 5299402 to 5299415 13 + TSS region transcription start site region 83637
Tssr83638 9 5299433 to 5299445 12 + TSS region transcription start site region 83638
Tssr83639 9 5299476 to 5299501 25 + TSS region transcription start site region 83639
Tssr83640 9 5301144 to 5301172 28 + TSS region transcription start site region 83640
Tssr83641 9 5303073 to 5303100 27 + TSS region transcription start site region 83641
Tssr83642 9 5303550 to 5303563 13 + TSS region transcription start site region 83642
Tssr83643 9 5303631 to 5303653 22 + TSS region transcription start site region 83643
Tssr83644 9 5304322 to 5304336 14 + TSS region transcription start site region 83644
Tssr83645 9 5306141 to 5306161 20 + TSS region transcription start site region 83645
Casp4 9 5308828 to 5336783 27955 + protein coding gene caspase 4, apoptosis-related cysteine peptidase
Tssr83646 9 5308842 to 5308873 31 + TSS region transcription start site region 83646
Tssr83647 9 5309658 to 5309679 21 + TSS region transcription start site region 83647
Tssr83648 9 5310306 to 5310313 7 + TSS region transcription start site region 83648
Tssr88052 9 5311426 to 5311447 21 - TSS region transcription start site region 88052
Tssr88053 9 5311471 to 5311479 8 - TSS region transcription start site region 88053
Tssr88054 9 5311489 to 5311504 15 - TSS region transcription start site region 88054
Tssr83649 9 5311985 to 5311998 13 + TSS region transcription start site region 83649
Tssr83650 9 5312159 to 5312172 13 + TSS region transcription start site region 83650
Tssr83651 9 5312856 to 5312867 11 + TSS region transcription start site region 83651
Tssr83652 9 5312869 to 5312880 11 + TSS region transcription start site region 83652
Tssr83653 9 5312883 to 5312898 15 + TSS region transcription start site region 83653
Tssr83654 9 5312912 to 5312924 12 + TSS region transcription start site region 83654
Tssr83655 9 5321297 to 5321311 14 + TSS region transcription start site region 83655
Tssr83656 9 5323709 to 5323723 14 + TSS region transcription start site region 83656
Tssr83657 9 5323793 to 5323806 13 + TSS region transcription start site region 83657
Tssr83658 9 5327222 to 5327238 16 + TSS region transcription start site region 83658
Tssr83659 9 5327278 to 5327295 17 + TSS region transcription start site region 83659
Tssr83660 9 5332819 to 5332833 14 + TSS region transcription start site region 83660
Tssr83661 9 5335408 to 5335424 16 + TSS region transcription start site region 83661
Tssr83662 9 5345414 to 5345435 21 + TSS region transcription start site region 83662
Casp12 9 5345442 to 5373034 27592 + protein coding gene caspase 12
Tssr83663 9 5345450 to 5345505 55 + TSS region transcription start site region 83663
Tssr88055 9 5440779 to 5440784 5 - TSS region transcription start site region 88055
Gm48506 9 5796779 to 5797033 254 + pseudogene predicted gene, 48506
Tssr2756 9 5857243 to 5857248 5 + TSS region transcription start site region 2756
Gm6015 9 5861647 to 5865418 3771 + pseudogene predicted gene 6015
Gm48640 9 5952442 to 5952667 225 - pseudogene predicted gene, 48640
Gm7425 9 6015245 to 6015935 690 + pseudogene predicted gene 7425
Gm9662 9 6070313 to 6074278 3965 + pseudogene predicted gene 9662
Cpgi21338 9 6168400 to 6168913 513 CpG island CpG island 21338
Tssr83664 9 6168449 to 6168460 11 + TSS region transcription start site region 83664
Tssr83665 9 6168470 to 6168488 18 + TSS region transcription start site region 83665
Tssr83666 9 6168553 to 6168567 14 + TSS region transcription start site region 83666
Tssr83667 9 6168570 to 6168595 25 + TSS region transcription start site region 83667
Pdgfd 9 6168584 to 6378850 210266 + protein coding gene platelet-derived growth factor, D polypeptide
Tssr83668 9 6168601 to 6168617 16 + TSS region transcription start site region 83668
Tssr83669 9 6168638 to 6168671 33 + TSS region transcription start site region 83669
Tssr2757 9 6168678 to 6168694 16 + TSS region transcription start site region 2757
Tssr83670 9 6193590 to 6193595 5 + TSS region transcription start site region 83670
Tssr83671 9 6238030 to 6238038 8 + TSS region transcription start site region 83671
D9Mit186 9 6256738 to 6256885 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 186
Ddi1 9 6265028 to 6266547 1519 - protein coding gene DNA-damage inducible 1
Tssr88056 9 6266544 to 6266553 9 - TSS region transcription start site region 88056
Tssr88057 9 6266562 to 6266590 28 - TSS region transcription start site region 88057
Gm7406 9 6354116 to 6356871 2755 unclassified gene predicted gene 7406
Gm21089 9 6594237 to 6594561 324 + pseudogene predicted gene, 21089
Gm48674 9 6665497 to 6665775 278 - pseudogene predicted gene, 48674
Gm23097 9 6706342 to 6706446 104 - snRNA gene predicted gene, 23097
Gm48675 9 6801843 to 6802419 576 + pseudogene predicted gene, 48675
8430439C15Rik 9 6911588 to 6912375 787 unclassified gene RIKEN cDNA 8430439C15 gene
Dync2h1 9 6928503 to 7177282 248779 - protein coding gene dynein cytoplasmic 2 heavy chain 1
Tssr2758 9 6953271 to 6953280 9 + TSS region transcription start site region 2758
Tssr88058 9 7015852 to 7015856 4 - TSS region transcription start site region 88058
Cpgi21339 9 7176624 to 7177199 575 CpG island CpG island 21339
Tssr88059 9 7176970 to 7176997 27 - TSS region transcription start site region 88059
Tssr88060 9 7177000 to 7177063 63 - TSS region transcription start site region 88060
Cpgi21340 9 7184229 to 7185303 1074 CpG island CpG island 21340
Dcun1d5 9 7184373 to 7207042 22669 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
Tssr88061 9 7184440 to 7184518 78 - TSS region transcription start site region 88061
Tssr83672 9 7184514 to 7184567 53 + TSS region transcription start site region 83672
Tssr88062 9 7221541 to 7221553 12 - TSS region transcription start site region 88062
Gm47741 9 7238154 to 7238379 225 - pseudogene predicted gene, 47741
Gm31639 9 7255494 to 7271508 16014 + lncRNA gene predicted gene, 31639
Mmp13 9 7272514 to 7283331 10817 + protein coding gene matrix metallopeptidase 13
Tssr83673 9 7272520 to 7272537 17 + TSS region transcription start site region 83673
Tssr83674 9 7277910 to 7277938 28 + TSS region transcription start site region 83674
Tssr83675 9 7277962 to 7277977 15 + TSS region transcription start site region 83675
Tssr83676 9 7280245 to 7280256 11 + TSS region transcription start site region 83676
Tssr83677 9 7280853 to 7280875 22 + TSS region transcription start site region 83677
Tssr83678 9 7282201 to 7282216 15 + TSS region transcription start site region 83678
Tssr83679 9 7282315 to 7282336 21 + TSS region transcription start site region 83679
Tssr83680 9 7282379 to 7282399 20 + TSS region transcription start site region 83680