Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:48439963-50569980

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264 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rapop7 9 36824947 to 49509211 12684264 QTL radiation-induced apoptosis 6
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
D9Mit154 9 48440047 to 48440176 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 154
D9Mit256 9 48443938 to 48444055 117 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 256
Tssr84983 9 48450260 to 48450268 8 + TSS region transcription start site region 84983
Tssr84984 9 48450285 to 48450294 9 + TSS region transcription start site region 84984
Tssr84985 9 48450295 to 48450324 29 + TSS region transcription start site region 84985
Tssr84986 9 48450327 to 48450336 9 + TSS region transcription start site region 84986
Gm5616 9 48450400 to 48450783 383 + pseudogene predicted gene 5616
Gm39335 9 48452097 to 48463225 11128 + lncRNA gene predicted gene, 39335
Tssr84987 9 48452336 to 48452345 9 + TSS region transcription start site region 84987
Gm8884 9 48454344 to 48454727 383 + lncRNA gene predicted gene 8884
Gm39334 9 48459419 to 48461196 1777 - lncRNA gene predicted gene, 39334
Rexo2 9 48468512 to 48480623 12111 - protein coding gene RNA exonuclease 2
Cpgi21715 9 48480067 to 48480839 772 CpG island CpG island 21715
Tssr89384 9 48480460 to 48480487 27 - TSS region transcription start site region 89384
Tssr89385 9 48480488 to 48480502 14 - TSS region transcription start site region 89385
Tssr89386 9 48480518 to 48480529 11 - TSS region transcription start site region 89386
Tssr89387 9 48480540 to 48480640 100 - TSS region transcription start site region 89387
Tssr89388 9 48480689 to 48480710 21 - TSS region transcription start site region 89388
Rbm7 9 48488701 to 48495299 6598 - protein coding gene RNA binding motif protein 7
Tssr89389 9 48489333 to 48489357 24 - TSS region transcription start site region 89389
Tssr89390 9 48494377 to 48494408 31 - TSS region transcription start site region 89390
Tssr89391 9 48494409 to 48494427 18 - TSS region transcription start site region 89391
Tssr89392 9 48494435 to 48494457 22 - TSS region transcription start site region 89392
Cpgi21716 9 48494806 to 48496020 1214 CpG island CpG island 21716
Tssr89393 9 48494982 to 48494989 7 - TSS region transcription start site region 89393
Tssr84988 9 48495049 to 48495057 8 + TSS region transcription start site region 84988
Tssr84989 9 48495072 to 48495115 43 + TSS region transcription start site region 84989
Tssr84990 9 48495211 to 48495220 9 + TSS region transcription start site region 84990
Tssr84991 9 48495261 to 48495266 5 + TSS region transcription start site region 84991
Tssr89394 9 48495266 to 48495273 7 - TSS region transcription start site region 89394
Tssr89395 9 48495274 to 48495318 44 - TSS region transcription start site region 89395
Tssr89396 9 48495321 to 48495335 14 - TSS region transcription start site region 89396
Tssr84992 9 48495368 to 48495400 32 + TSS region transcription start site region 84992
Tssr84993 9 48495406 to 48495451 45 + TSS region transcription start site region 84993
Gm5617 9 48495442 to 48495972 530 + protein coding gene predicted gene 5617
Tssr2862 9 48495872 to 48495898 26 - TSS region transcription start site region 2862
Tssr84994 9 48495903 to 48495910 7 + TSS region transcription start site region 84994
1700121I08Rik 9 48495978 to 48496356 378 unclassified gene RIKEN cDNA 1700121I08 gene
Gm23653 9 48506964 to 48507060 96 - miRNA gene predicted gene, 23653
D9Mit331 9 48576188 to 48576284 96 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 331
Nnmt 9 48591877 to 48605153 13276 - protein coding gene nicotinamide N-methyltransferase
Tssr89397 9 48597441 to 48597446 5 - TSS region transcription start site region 89397
Tssr89398 9 48604979 to 48605000 21 - TSS region transcription start site region 89398
Tssr89399 9 48605007 to 48605018 11 - TSS region transcription start site region 89399
Tssr89400 9 48605073 to 48605084 11 - TSS region transcription start site region 89400
Tssr89401 9 48605085 to 48605100 15 - TSS region transcription start site region 89401
Tssr89402 9 48605104 to 48605116 12 - TSS region transcription start site region 89402
Tssr89403 9 48605120 to 48605133 13 - TSS region transcription start site region 89403
Tssr89404 9 48605147 to 48605158 11 - TSS region transcription start site region 89404
Tssr89405 9 48649605 to 48649624 19 - TSS region transcription start site region 89405
Tssr89406 9 48652473 to 48652490 17 - TSS region transcription start site region 89406
Zbtb16 9 48654297 to 48836222 181925 - protein coding gene zinc finger and BTB domain containing 16
Tssr89407 9 48655806 to 48655813 7 - TSS region transcription start site region 89407
Tssr89408 9 48656508 to 48656522 14 - TSS region transcription start site region 89408
Gm32280 9 48665954 to 48677241 11287 + lncRNA gene predicted gene, 32280
Tssr84995 9 48670448 to 48670497 49 + TSS region transcription start site region 84995
Tssr2863 9 48708776 to 48708777 1 + TSS region transcription start site region 2863
Tssr89409 9 48738975 to 48738995 20 - TSS region transcription start site region 89409
Tssr89410 9 48740701 to 48740704 3 - TSS region transcription start site region 89410
Adip20b 9 48789608 to 53884418 5094810 QTL adiposity 20b
Tssr89411 9 48793965 to 48793969 4 - TSS region transcription start site region 89411
Tssr84996 9 48798330 to 48798335 5 + TSS region transcription start site region 84996
Tssr89412 9 48799664 to 48799669 5 - TSS region transcription start site region 89412
Tssr89413 9 48808216 to 48808225 9 - TSS region transcription start site region 89413
Tssr84997 9 48817577 to 48817582 5 + TSS region transcription start site region 84997
Tssr89414 9 48822098 to 48822101 3 - TSS region transcription start site region 89414
Cpgi21717 9 48834521 to 48836680 2159 CpG island CpG island 21717
Tssr89415 9 48835908 to 48835922 14 - TSS region transcription start site region 89415
Tssr89416 9 48835932 to 48835962 30 - TSS region transcription start site region 89416
Tssr89417 9 48836179 to 48836200 21 - TSS region transcription start site region 89417
Tssr89418 9 48836201 to 48836259 58 - TSS region transcription start site region 89418
Tssr89419 9 48836324 to 48836357 33 - TSS region transcription start site region 89419
Cpgi21718 9 48896317 to 48896500 183 CpG island CpG island 21718
Gm32335 9 48896451 to 48905982 9531 + antisense lncRNA gene predicted gene, 32335
Htr3a 9 48899213 to 48911099 11886 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 3A
Tssr89420 9 48910920 to 48910946 26 - TSS region transcription start site region 89420
Tssr89421 9 48911067 to 48911078 11 - TSS region transcription start site region 89421
Tssr89422 9 48911120 to 48911140 20 - TSS region transcription start site region 89422
Htr3b 9 48935008 to 48964990 29982 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 3B
Cpgi21719 9 48984777 to 48985990 1213 CpG island CpG island 21719
Tssr84998 9 48985358 to 48985451 93 + TSS region transcription start site region 84998
Usp28 9 48985375 to 49042517 57142 + protein coding gene ubiquitin specific peptidase 28
Tssr84999 9 48985467 to 48985478 11 + TSS region transcription start site region 84999
Tssr85000 9 48987428 to 48987436 8 + TSS region transcription start site region 85000
Tssr85001 9 48991987 to 48992005 18 + TSS region transcription start site region 85001
Tssr85002 9 49002585 to 49002588 3 + TSS region transcription start site region 85002
Tssr85003 9 49028128 to 49028140 12 + TSS region transcription start site region 85003
Tssr85004 9 49030876 to 49030883 7 + TSS region transcription start site region 85004
Tssr85005 9 49037281 to 49037283 2 + TSS region transcription start site region 85005
Cldn25-ps 9 49047676 to 49048267 591 - pseudogene claudin 25, pseudogene
1700042D02Rik 9 49051335 to 49055465 4130 - lincRNA gene RIKEN cDNA 1700042D02 gene
Cpgi21720 9 49055441 to 49056112 671 CpG island CpG island 21720
Tssr89423 9 49055486 to 49055497 11 - TSS region transcription start site region 89423
Tssr85006 9 49055574 to 49055629 55 + TSS region transcription start site region 85006
Zw10 9 49055613 to 49078775 23162 + protein coding gene zw10 kinetochore protein
Tssr85007 9 49055635 to 49055682 47 + TSS region transcription start site region 85007
Tssr89424 9 49079358 to 49079378 20 - TSS region transcription start site region 89424
Tmprss5 9 49081260 to 49117587 36327 + protein coding gene transmembrane protease, serine 5 (spinesin)
D9Mit99 9 49095649 to 49095834 185 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 99
Tssr85008 9 49102720 to 49102752 32 + TSS region transcription start site region 85008
Tssr85009 9 49108662 to 49108665 3 + TSS region transcription start site region 85009
Tssr89425 9 49148127 to 49148141 14 - TSS region transcription start site region 89425
Tssr2864 9 49222172 to 49222176 4 + TSS region transcription start site region 2864
D9Mit315 9 49227794 to 49227912 118 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-315
Tssr85010 9 49250485 to 49250532 47 + TSS region transcription start site region 85010
Gm4894 9 49250531 to 49280594 30063 + protein coding gene predicted gene 4894
Cpgi21721 9 49340126 to 49341228 1102 CpG island CpG island 21721
Tssr85011 9 49340353 to 49340363 10 + TSS region transcription start site region 85011
Tssr85012 9 49340383 to 49340386 3 + TSS region transcription start site region 85012
Tssr85013 9 49340387 to 49340408 21 + TSS region transcription start site region 85013
Drd2 9 49340627 to 49408177 67550 + protein coding gene dopamine receptor D2
Gm46112 9 49404408 to 49407370 2962 - lncRNA gene predicted gene, 46112
Gm46111 9 49407421 to 49410846 3425 - lncRNA gene predicted gene, 46111
Tssr89426 9 49410834 to 49410853 19 - TSS region transcription start site region 89426
Ankk1 9 49415194 to 49427021 11827 - protein coding gene ankyrin repeat and kinase domain containing 1
Ttc12 9 49436963 to 49486225 49262 - protein coding gene tetratricopeptide repeat domain 12
Tssr89427 9 49474426 to 49474440 14 - TSS region transcription start site region 89427
Cpgi21722 9 49485902 to 49486448 546 CpG island CpG island 21722
Tssr89428 9 49486166 to 49486189 23 - TSS region transcription start site region 89428
Tssr89429 9 49486191 to 49486202 11 - TSS region transcription start site region 89429
Tssr89430 9 49486209 to 49486230 21 - TSS region transcription start site region 89430
4921518B13Rik 9 49488658 to 49490361 1703 unclassified gene RIKEN cDNA 4921518B13 gene
Tssr89431 9 49490331 to 49490363 32 - TSS region transcription start site region 89431
Ncam1 9 49502136 to 49798925 296789 - protein coding gene neural cell adhesion molecule 1
Tssr89432 9 49503778 to 49503790 12 - TSS region transcription start site region 89432
Tssr89433 9 49504061 to 49504076 15 - TSS region transcription start site region 89433
Tssr89434 9 49504138 to 49504160 22 - TSS region transcription start site region 89434
Tssr89435 9 49504311 to 49504325 14 - TSS region transcription start site region 89435
Tssr89436 9 49504745 to 49504757 12 - TSS region transcription start site region 89436
Tssr89437 9 49504963 to 49504980 17 - TSS region transcription start site region 89437
D9Mit98 9 49505060 to 49505407 347 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 98
Tssr89438 9 49505154 to 49505175 21 - TSS region transcription start site region 89438
Tssr89439 9 49505197 to 49505225 28 - TSS region transcription start site region 89439
Tssr85014 9 49505264 to 49505275 11 + TSS region transcription start site region 85014
Tssr89440 9 49505373 to 49505414 41 - TSS region transcription start site region 89440
Tssr89441 9 49505433 to 49505458 25 - TSS region transcription start site region 89441
Tssr89442 9 49505486 to 49505511 25 - TSS region transcription start site region 89442
Tssr89443 9 49505514 to 49505533 19 - TSS region transcription start site region 89443
Tssr89444 9 49505544 to 49505556 12 - TSS region transcription start site region 89444
Tssr89445 9 49506901 to 49506931 30 - TSS region transcription start site region 89445
Tssr89446 9 49506937 to 49506972 35 - TSS region transcription start site region 89446
Tssr89447 9 49508625 to 49508641 16 - TSS region transcription start site region 89447
Eae9 9 49508998 to 63332570 13823572 QTL experimental allergic encephalomyelitis susceptibility 9
D9Mit22 9 49508998 to 49509211 213 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 22
El4 9 49508998 to 67244166 17735168 QTL epilepsy 4
D9Nds6 9 49509032 to 49509223 191 DNA segment DNA segment, Chr 9, Nuffield Department of Surgery 6
Tssr89448 9 49509808 to 49509839 31 - TSS region transcription start site region 89448
Tssr89449 9 49509857 to 49509916 59 - TSS region transcription start site region 89449
D9Mit299 9 49514376 to 49514460 84 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 299
repro28 9 49514376 to 69831153 20316777 heritable phenotypic marker reproductive mutant 28, JAX Reproductive Mutagenesis Program
Tssr89450 9 49515263 to 49515266 3 - TSS region transcription start site region 89450
Tssr89451 9 49517559 to 49517578 19 - TSS region transcription start site region 89451
Gm11149 9 49518288 to 49568025 49737 + antisense lncRNA gene predicted gene 11149
Tssr85015 9 49518312 to 49518332 20 + TSS region transcription start site region 85015
Tssr85016 9 49518337 to 49518340 3 + TSS region transcription start site region 85016
Actd4 9 49523263 to 49523557 294 QTL activity-distance traveled 4
D9Mit94 9 49523263 to 49523557 294 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 94
Tssr89452 9 49529524 to 49529535 11 - TSS region transcription start site region 89452
D9Mit229 9 49541121 to 49541246 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 229
Cq5 9 49541121 to 49541246 125 QTL cholesterol QTL 5
Tssr89453 9 49554512 to 49554529 17 - TSS region transcription start site region 89453
Tssr89454 9 49554575 to 49554596 21 - TSS region transcription start site region 89454
Tssr85017 9 49559225 to 49559228 3 + TSS region transcription start site region 85017
Tssr89455 9 49568469 to 49568505 36 - TSS region transcription start site region 89455
Tssr89456 9 49568518 to 49568533 15 - TSS region transcription start site region 89456
Tssr89457 9 49570824 to 49570850 26 - TSS region transcription start site region 89457
Hts 9 49599872 to 49600121 249 QTL hypothermia sensitivity
D9Mit171 9 49599872 to 49600121 249 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 171
Tssr89458 9 49630289 to 49630292 3 - TSS region transcription start site region 89458
Tssr89459 9 49673942 to 49673944 2 - TSS region transcription start site region 89459
Tssr89460 9 49714158 to 49714169 11 - TSS region transcription start site region 89460
Tssr89461 9 49715960 to 49715987 27 - TSS region transcription start site region 89461
Tssr89462 9 49716058 to 49716079 21 - TSS region transcription start site region 89462
Tssr89463 9 49718740 to 49718745 5 - TSS region transcription start site region 89463
Tssr89464 9 49756422 to 49756425 3 - TSS region transcription start site region 89464
Tssr89465 9 49765917 to 49765921 4 - TSS region transcription start site region 89465
D9Mit46 9 49782040 to 49782153 113 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 46
Tssr89466 9 49794457 to 49794461 4 - TSS region transcription start site region 89466
Cpgi21723 9 49796656 to 49799162 2506 CpG island CpG island 21723
Tssr89467 9 49798821 to 49798855 34 - TSS region transcription start site region 89467
Tssr89468 9 49798905 to 49798931 26 - TSS region transcription start site region 89468
Tssr2865 9 49798947 to 49798958 11 - TSS region transcription start site region 2865
Gm25633 9 49825869 to 49825975 106 - snRNA gene predicted gene, 25633
D9Mit131.1 9 49912510 to 49912656 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.1
D9Mit131 9 49912652 to 49912799 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131
D9Mit131.2 9 49912746 to 49912855 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 131.2
Tssr85018 9 49954868 to 49954891 23 + TSS region transcription start site region 85018
Gm47543 9 49954878 to 49956554 1676 + lincRNA gene predicted gene, 47543
Tssr85019 9 49954893 to 49954900 7 + TSS region transcription start site region 85019
Tssr85020 9 49954902 to 49954911 9 + TSS region transcription start site region 85020
D9Mit162.1 9 49978195 to 49978395 200 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162.1
D9Mit162 9 49978402 to 49978536 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 162
Ptnu3 9 49978402 to 49978536 134 QTL proteinuria 3
Tssr89469 9 50124332 to 50124346 14 - TSS region transcription start site region 89469
Gm8907 9 50186043 to 50187045 1002 - pseudogene predicted gene 8907
repro36 9 50199725 to 60494414 10294689 heritable phenotypic marker reproductive mutant 36, JAX Reproductive Mutagenesis Program
Si5lq3 9 50199725 to 50199840 115 QTL serum IGFBP-5 level QTL 3