Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:48348512-48600623

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Nxpe4 9 48162023 to 48400025 238002 + protein coding gene neurexophilin and PC-esterase domain family, member 4
Nxpe2 9 48318006 to 48353454 35448 - protein coding gene neurexophilin and PC-esterase domain family, member 2
Tssr84975 9 48362034 to 48362056 22 + TSS region transcription start site region 84975
Tssr89381 9 48388376 to 48388381 5 - TSS region transcription start site region 89381
Tssr84976 9 48390048 to 48390059 11 + TSS region transcription start site region 84976
D9Mit298 9 48393836 to 48393956 120 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 298
Tssr84977 9 48403793 to 48403833 40 + TSS region transcription start site region 84977
Tssr84978 9 48403924 to 48403938 14 + TSS region transcription start site region 84978
Tssr84979 9 48403954 to 48403963 9 + TSS region transcription start site region 84979
Tssr84980 9 48407721 to 48407760 39 + TSS region transcription start site region 84980
Tssr84981 9 48418309 to 48418328 19 + TSS region transcription start site region 84981
Tssr84982 9 48418559 to 48418585 26 + TSS region transcription start site region 84982
Gm32131 9 48418879 to 48420522 1643 - lncRNA gene predicted gene, 32131
Nxpe1-ps 9 48420046 to 48431940 11894 + pseudogene neurexophilin and PC-esterase domain family, member 1, pseudogene
Tssr89382 9 48420567 to 48420578 11 - TSS region transcription start site region 89382
Tssr89383 9 48420599 to 48420638 39 - TSS region transcription start site region 89383
D9Mit154 9 48440047 to 48440176 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 154
D9Mit256 9 48443938 to 48444055 117 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 256
Tssr84983 9 48450260 to 48450268 8 + TSS region transcription start site region 84983
Tssr84984 9 48450285 to 48450294 9 + TSS region transcription start site region 84984
Tssr84985 9 48450295 to 48450324 29 + TSS region transcription start site region 84985
Tssr84986 9 48450327 to 48450336 9 + TSS region transcription start site region 84986
Gm5616 9 48450400 to 48450783 383 + pseudogene predicted gene 5616
Gm39335 9 48452097 to 48463225 11128 + lncRNA gene predicted gene, 39335
Tssr84987 9 48452336 to 48452345 9 + TSS region transcription start site region 84987
Gm8884 9 48454344 to 48454727 383 + lncRNA gene predicted gene 8884
Gm39334 9 48459419 to 48461196 1777 - lncRNA gene predicted gene, 39334
Rexo2 9 48468512 to 48480623 12111 - protein coding gene RNA exonuclease 2
Cpgi21715 9 48480067 to 48480839 772 CpG island CpG island 21715
Tssr89384 9 48480460 to 48480487 27 - TSS region transcription start site region 89384
Tssr89385 9 48480488 to 48480502 14 - TSS region transcription start site region 89385
Tssr89386 9 48480518 to 48480529 11 - TSS region transcription start site region 89386
Tssr89387 9 48480540 to 48480640 100 - TSS region transcription start site region 89387
Tssr89388 9 48480689 to 48480710 21 - TSS region transcription start site region 89388
Rbm7 9 48488701 to 48495299 6598 - protein coding gene RNA binding motif protein 7
Tssr89389 9 48489333 to 48489357 24 - TSS region transcription start site region 89389
Tssr89390 9 48494377 to 48494408 31 - TSS region transcription start site region 89390
Tssr89391 9 48494409 to 48494427 18 - TSS region transcription start site region 89391
Tssr89392 9 48494435 to 48494457 22 - TSS region transcription start site region 89392
Cpgi21716 9 48494806 to 48496020 1214 CpG island CpG island 21716
Tssr89393 9 48494982 to 48494989 7 - TSS region transcription start site region 89393
Tssr84988 9 48495049 to 48495057 8 + TSS region transcription start site region 84988
Tssr84989 9 48495072 to 48495115 43 + TSS region transcription start site region 84989
Tssr84990 9 48495211 to 48495220 9 + TSS region transcription start site region 84990
Tssr84991 9 48495261 to 48495266 5 + TSS region transcription start site region 84991
Tssr89394 9 48495266 to 48495273 7 - TSS region transcription start site region 89394
Tssr89395 9 48495274 to 48495318 44 - TSS region transcription start site region 89395
Tssr89396 9 48495321 to 48495335 14 - TSS region transcription start site region 89396
Tssr84992 9 48495368 to 48495400 32 + TSS region transcription start site region 84992
Tssr84993 9 48495406 to 48495451 45 + TSS region transcription start site region 84993
Gm5617 9 48495442 to 48495972 530 + protein coding gene predicted gene 5617
Tssr2862 9 48495872 to 48495898 26 - TSS region transcription start site region 2862
Tssr84994 9 48495903 to 48495910 7 + TSS region transcription start site region 84994
1700121I08Rik 9 48495978 to 48496356 378 unclassified gene RIKEN cDNA 1700121I08 gene
Gm23653 9 48506964 to 48507060 96 - miRNA gene predicted gene, 23653
D9Mit331 9 48576188 to 48576284 96 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 331
Nnmt 9 48591877 to 48605153 13276 - protein coding gene nicotinamide N-methyltransferase
Tssr89397 9 48597441 to 48597446 5 - TSS region transcription start site region 89397