Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:47043101-48663123

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Gm31698 9 47119054 to 47183682 64628 - lincRNA gene predicted gene, 31698
D9Mit330 9 47141866 to 47141979 113 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 330
Ap5q 9 47141866 to 47141979 113 QTL alcohol preference 5 QTL
Cpgi21711 9 47167809 to 47167974 165 CpG island CpG island 21711
Gm31756 9 47232323 to 47240521 8198 + lncRNA gene predicted gene, 31756
Gm39332 9 47239051 to 47243240 4189 - lncRNA gene predicted gene, 39332
Gm31816 9 47259985 to 47368729 108744 - lincRNA gene predicted gene, 31816
Cpgi21712 9 47368085 to 47368309 224 CpG island CpG island 21712
Gm47160 9 47473049 to 47474918 1869 - unclassified gene predicted gene, 47160
Tssr89366 9 47474853 to 47474865 12 - TSS region transcription start site region 89366
Tssr89367 9 47474905 to 47474923 18 - TSS region transcription start site region 89367
Gm47161 9 47481628 to 47486506 4878 - unclassified gene predicted gene, 47161
Gm22286 9 47525616 to 47525722 106 - snRNA gene predicted gene, 22286
Cpgi21713 9 47529695 to 47532013 2318 CpG island CpG island 21713
Tssr89368 9 47530091 to 47530099 8 - TSS region transcription start site region 89368
Cadm1 9 47530173 to 47857637 327464 + protein coding gene cell adhesion molecule 1
Tssr84921 9 47530343 to 47530362 19 + TSS region transcription start site region 84921
Tssr84922 9 47539467 to 47539471 4 + TSS region transcription start site region 84922
Tssr84923 9 47540615 to 47540634 19 + TSS region transcription start site region 84923
Tssr84924 9 47544197 to 47544219 22 + TSS region transcription start site region 84924
Tssr84925 9 47547937 to 47547947 10 + TSS region transcription start site region 84925
Tssr84926 9 47550372 to 47550385 13 + TSS region transcription start site region 84926
Tssr84927 9 47554355 to 47554359 4 + TSS region transcription start site region 84927
Tssr84928 9 47569209 to 47569232 23 + TSS region transcription start site region 84928
Tssr84929 9 47618637 to 47618681 44 + TSS region transcription start site region 84929
Tssr84930 9 47623288 to 47623291 3 + TSS region transcription start site region 84930
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
D9Mit130 9 47631726 to 47631842 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 130
Tssr84931 9 47636801 to 47636812 11 + TSS region transcription start site region 84931
Tssr84932 9 47643572 to 47643576 4 + TSS region transcription start site region 84932
Tssr84933 9 47644442 to 47644446 4 + TSS region transcription start site region 84933
D9Mit257 9 47644585 to 47644709 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 257
Tssr84934 9 47645077 to 47645097 20 + TSS region transcription start site region 84934
Tssr84935 9 47655116 to 47655151 35 + TSS region transcription start site region 84935
Tssr84936 9 47658366 to 47658403 37 + TSS region transcription start site region 84936
Tssr84937 9 47693260 to 47693281 21 + TSS region transcription start site region 84937
Tssr84938 9 47697413 to 47697428 15 + TSS region transcription start site region 84938
Tssr84939 9 47700045 to 47700053 8 + TSS region transcription start site region 84939
Tssr84940 9 47703560 to 47703596 36 + TSS region transcription start site region 84940
Tssr89369 9 47708443 to 47708467 24 - TSS region transcription start site region 89369
Tssr84941 9 47708897 to 47708902 5 + TSS region transcription start site region 84941
Tssr84942 9 47712779 to 47712787 8 + TSS region transcription start site region 84942
Tssr84943 9 47722015 to 47722030 15 + TSS region transcription start site region 84943
Tssr84944 9 47738692 to 47738700 8 + TSS region transcription start site region 84944
Tssr84945 9 47739704 to 47739708 4 + TSS region transcription start site region 84945
Tssr84946 9 47740155 to 47740160 5 + TSS region transcription start site region 84946
Tssr84947 9 47745402 to 47745408 6 + TSS region transcription start site region 84947
Tssr84948 9 47745910 to 47745930 20 + TSS region transcription start site region 84948
Gm47198 9 47771141 to 47773375 2234 + unclassified gene predicted gene, 47198
Gm47197 9 47773791 to 47776737 2946 - unclassified gene predicted gene, 47197
D9Ertd341e 9 47783111 to 47783335 224 DNA segment DNA segment, Chr 9, ERATO Doi 341, expressed
Tssr84949 9 47789779 to 47789814 35 + TSS region transcription start site region 84949
Tssr84950 9 47796002 to 47796006 4 + TSS region transcription start site region 84950
Gm10677 9 47799160 to 47818208 19048 - lncRNA gene predicted gene 10677
Tssr84951 9 47799469 to 47799500 31 + TSS region transcription start site region 84951
Tssr84952 9 47810081 to 47810093 12 + TSS region transcription start site region 84952
Tssr84953 9 47810095 to 47810109 14 + TSS region transcription start site region 84953
Tssr84954 9 47813789 to 47813813 24 + TSS region transcription start site region 84954
Tssr84955 9 47813831 to 47813843 12 + TSS region transcription start site region 84955
Tssr84956 9 47813903 to 47813923 20 + TSS region transcription start site region 84956
Tssr84957 9 47818720 to 47818751 31 + TSS region transcription start site region 84957
Vtbt7 9 47828617 to 47828723 106 QTL vertebral trabecular bone trait 7
D9Mit95 9 47828617 to 47828723 106 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 95
Tssr84958 9 47832938 to 47832944 6 + TSS region transcription start site region 84958
Tssr84959 9 47848214 to 47848253 39 + TSS region transcription start site region 84959
Tssr84960 9 47850288 to 47850317 29 + TSS region transcription start site region 84960
Tssr84961 9 47850533 to 47850554 21 + TSS region transcription start site region 84961
Tssr84962 9 47850638 to 47850685 47 + TSS region transcription start site region 84962
Tssr84963 9 47852403 to 47852420 17 + TSS region transcription start site region 84963
Tssr84964 9 47852449 to 47852495 46 + TSS region transcription start site region 84964
Tssr84965 9 47852555 to 47852572 17 + TSS region transcription start site region 84965
Tssr84966 9 47852595 to 47852612 17 + TSS region transcription start site region 84966
Tssr84967 9 47852621 to 47852637 16 + TSS region transcription start site region 84967
Tssr84968 9 47852843 to 47852892 49 + TSS region transcription start site region 84968
Tssr84969 9 47853101 to 47853123 22 + TSS region transcription start site region 84969
Tssr84970 9 47893258 to 47893307 49 + TSS region transcription start site region 84970
Tssr84971 9 47893310 to 47893320 10 + TSS region transcription start site region 84971
Tssr2861 9 47894177 to 47894208 31 - TSS region transcription start site region 2861
Gm32016 9 47939416 to 47950344 10928 + lncRNA gene predicted gene, 32016
Gm47213 9 47947880 to 47948161 281 - pseudogene predicted gene, 47213
Gm47215 9 47964476 to 47967312 2836 + unclassified gene predicted gene, 47215
Gm47236 9 48000353 to 48000798 445 - pseudogene predicted gene, 47236
A730065G17Rik 9 48049516 to 48071634 22118 + lincRNA gene RIKEN cDNA A730065G17 gene
Gm40518 9 48132748 to 48158748 26000 - lincRNA gene predicted gene, 40518
Tssr84972 9 48162008 to 48162045 37 + TSS region transcription start site region 84972
Nxpe4 9 48162023 to 48400025 238002 + protein coding gene neurexophilin and PC-esterase domain family, member 4
Cpgi21714 9 48266859 to 48267467 608 CpG island CpG island 21714
Tssr84973 9 48314424 to 48314443 19 + TSS region transcription start site region 84973
Tssr84974 9 48314449 to 48314505 56 + TSS region transcription start site region 84974
Nxpe2 9 48318006 to 48353454 35448 - protein coding gene neurexophilin and PC-esterase domain family, member 2
Tssr89370 9 48319371 to 48319376 5 - TSS region transcription start site region 89370
Tssr89371 9 48339722 to 48339754 32 - TSS region transcription start site region 89371
Tssr89372 9 48340623 to 48340634 11 - TSS region transcription start site region 89372
Tssr89373 9 48340652 to 48340668 16 - TSS region transcription start site region 89373
Tssr89374 9 48340682 to 48340685 3 - TSS region transcription start site region 89374
Tssr89375 9 48340694 to 48340697 3 - TSS region transcription start site region 89375
Tssr89376 9 48340774 to 48340791 17 - TSS region transcription start site region 89376
Tssr89377 9 48340792 to 48340809 17 - TSS region transcription start site region 89377
Tssr89378 9 48340814 to 48340842 28 - TSS region transcription start site region 89378
Tssr89379 9 48340845 to 48340860 15 - TSS region transcription start site region 89379
Tssr89380 9 48340876 to 48340893 17 - TSS region transcription start site region 89380
Tssr84975 9 48362034 to 48362056 22 + TSS region transcription start site region 84975
Tssr89381 9 48388376 to 48388381 5 - TSS region transcription start site region 89381
Tssr84976 9 48390048 to 48390059 11 + TSS region transcription start site region 84976
D9Mit298 9 48393836 to 48393956 120 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 298
Tssr84977 9 48403793 to 48403833 40 + TSS region transcription start site region 84977
Tssr84978 9 48403924 to 48403938 14 + TSS region transcription start site region 84978
Tssr84979 9 48403954 to 48403963 9 + TSS region transcription start site region 84979
Tssr84980 9 48407721 to 48407760 39 + TSS region transcription start site region 84980
Tssr84981 9 48418309 to 48418328 19 + TSS region transcription start site region 84981
Tssr84982 9 48418559 to 48418585 26 + TSS region transcription start site region 84982
Gm32131 9 48418879 to 48420522 1643 - lncRNA gene predicted gene, 32131
Nxpe1-ps 9 48420046 to 48431940 11894 + pseudogene neurexophilin and PC-esterase domain family, member 1, pseudogene
Tssr89382 9 48420567 to 48420578 11 - TSS region transcription start site region 89382
Tssr89383 9 48420599 to 48420638 39 - TSS region transcription start site region 89383
D9Mit154 9 48440047 to 48440176 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 154
D9Mit256 9 48443938 to 48444055 117 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 256
Tssr84983 9 48450260 to 48450268 8 + TSS region transcription start site region 84983
Tssr84984 9 48450285 to 48450294 9 + TSS region transcription start site region 84984
Tssr84985 9 48450295 to 48450324 29 + TSS region transcription start site region 84985
Tssr84986 9 48450327 to 48450336 9 + TSS region transcription start site region 84986
Gm5616 9 48450400 to 48450783 383 + pseudogene predicted gene 5616
Gm39335 9 48452097 to 48463225 11128 + lncRNA gene predicted gene, 39335
Tssr84987 9 48452336 to 48452345 9 + TSS region transcription start site region 84987
Gm8884 9 48454344 to 48454727 383 + lncRNA gene predicted gene 8884
Gm39334 9 48459419 to 48461196 1777 - lncRNA gene predicted gene, 39334
Rexo2 9 48468512 to 48480623 12111 - protein coding gene RNA exonuclease 2
Cpgi21715 9 48480067 to 48480839 772 CpG island CpG island 21715
Tssr89384 9 48480460 to 48480487 27 - TSS region transcription start site region 89384
Tssr89385 9 48480488 to 48480502 14 - TSS region transcription start site region 89385
Tssr89386 9 48480518 to 48480529 11 - TSS region transcription start site region 89386
Tssr89387 9 48480540 to 48480640 100 - TSS region transcription start site region 89387
Tssr89388 9 48480689 to 48480710 21 - TSS region transcription start site region 89388
Rbm7 9 48488701 to 48495299 6598 - protein coding gene RNA binding motif protein 7
Tssr89389 9 48489333 to 48489357 24 - TSS region transcription start site region 89389
Tssr89390 9 48494377 to 48494408 31 - TSS region transcription start site region 89390
Tssr89391 9 48494409 to 48494427 18 - TSS region transcription start site region 89391
Tssr89392 9 48494435 to 48494457 22 - TSS region transcription start site region 89392
Cpgi21716 9 48494806 to 48496020 1214 CpG island CpG island 21716
Tssr89393 9 48494982 to 48494989 7 - TSS region transcription start site region 89393
Tssr84988 9 48495049 to 48495057 8 + TSS region transcription start site region 84988
Tssr84989 9 48495072 to 48495115 43 + TSS region transcription start site region 84989
Tssr84990 9 48495211 to 48495220 9 + TSS region transcription start site region 84990
Tssr84991 9 48495261 to 48495266 5 + TSS region transcription start site region 84991
Tssr89394 9 48495266 to 48495273 7 - TSS region transcription start site region 89394
Tssr89395 9 48495274 to 48495318 44 - TSS region transcription start site region 89395
Tssr89396 9 48495321 to 48495335 14 - TSS region transcription start site region 89396
Tssr84992 9 48495368 to 48495400 32 + TSS region transcription start site region 84992
Tssr84993 9 48495406 to 48495451 45 + TSS region transcription start site region 84993
Gm5617 9 48495442 to 48495972 530 + protein coding gene predicted gene 5617
Tssr2862 9 48495872 to 48495898 26 - TSS region transcription start site region 2862
Tssr84994 9 48495903 to 48495910 7 + TSS region transcription start site region 84994
1700121I08Rik 9 48495978 to 48496356 378 unclassified gene RIKEN cDNA 1700121I08 gene
Gm23653 9 48506964 to 48507060 96 - miRNA gene predicted gene, 23653
D9Mit331 9 48576188 to 48576284 96 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 331
Nnmt 9 48591877 to 48605153 13276 - protein coding gene nicotinamide N-methyltransferase
Tssr89397 9 48597441 to 48597446 5 - TSS region transcription start site region 89397
Tssr89398 9 48604979 to 48605000 21 - TSS region transcription start site region 89398
Tssr89399 9 48605007 to 48605018 11 - TSS region transcription start site region 89399
Tssr89400 9 48605073 to 48605084 11 - TSS region transcription start site region 89400
Tssr89401 9 48605085 to 48605100 15 - TSS region transcription start site region 89401
Tssr89402 9 48605104 to 48605116 12 - TSS region transcription start site region 89402
Tssr89403 9 48605120 to 48605133 13 - TSS region transcription start site region 89403
Tssr89404 9 48605147 to 48605158 11 - TSS region transcription start site region 89404
Tssr89405 9 48649605 to 48649624 19 - TSS region transcription start site region 89405
Tssr89406 9 48652473 to 48652490 17 - TSS region transcription start site region 89406
Zbtb16 9 48654297 to 48836222 181925 - protein coding gene zinc finger and BTB domain containing 16
Tssr89407 9 48655806 to 48655813 7 - TSS region transcription start site region 89407
Tssr89408 9 48656508 to 48656522 14 - TSS region transcription start site region 89408