Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46594853-48354865

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121 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48945 9 46607255 to 46612726 5471 + lincRNA gene predicted gene, 48945
Tssr84914 9 46618758 to 46618762 4 + TSS region transcription start site region 84914
Gm22805 9 46630113 to 46630219 106 - snRNA gene predicted gene, 22805
Gm31557 9 46666273 to 46674844 8571 + lincRNA gene predicted gene, 31557
D9Mit191 9 46686373 to 46686518 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 191
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Gm8863 9 46713233 to 46714158 925 - pseudogene predicted gene 8863
Gm31614 9 46830358 to 46835945 5587 + lincRNA gene predicted gene, 31614
Gm39330 9 46839674 to 46844259 4585 + lncRNA gene predicted gene, 39330
Tssr84915 9 46913473 to 46913480 7 + TSS region transcription start site region 84915
Tssr84916 9 46913553 to 46913554 1 + TSS region transcription start site region 84916
Tssr84917 9 46913557 to 46913573 16 + TSS region transcription start site region 84917
Tssr84918 9 46913574 to 46913585 11 + TSS region transcription start site region 84918
Tssr84919 9 46913590 to 46913614 24 + TSS region transcription start site region 84919
2900052N01Rik 9 46913603 to 46927366 13763 + lincRNA gene RIKEN cDNA 2900052N01 gene
Tssr84920 9 46913619 to 46913632 13 + TSS region transcription start site region 84920
Gm39331 9 46955630 to 46957221 1591 + lncRNA gene predicted gene, 39331
Gm47153 9 46960235 to 46979053 18818 - lincRNA gene predicted gene, 47153
Gm4791 9 46998741 to 47003860 5119 + protein coding gene predicted gene 4791
Gf8 9 47007208 to 47007208 0 QTL gonadal fat pad weight 8
Gm31698 9 47119054 to 47183682 64628 - lincRNA gene predicted gene, 31698
D9Mit330 9 47141866 to 47141979 113 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 330
Ap5q 9 47141866 to 47141979 113 QTL alcohol preference 5 QTL
Cpgi21711 9 47167809 to 47167974 165 CpG island CpG island 21711
Gm31756 9 47232323 to 47240521 8198 + lncRNA gene predicted gene, 31756
Gm39332 9 47239051 to 47243240 4189 - lncRNA gene predicted gene, 39332
Gm31816 9 47259985 to 47368729 108744 - lincRNA gene predicted gene, 31816
Cpgi21712 9 47368085 to 47368309 224 CpG island CpG island 21712
Gm47160 9 47473049 to 47474918 1869 - unclassified gene predicted gene, 47160
Tssr89366 9 47474853 to 47474865 12 - TSS region transcription start site region 89366
Tssr89367 9 47474905 to 47474923 18 - TSS region transcription start site region 89367
Gm47161 9 47481628 to 47486506 4878 - unclassified gene predicted gene, 47161
Gm22286 9 47525616 to 47525722 106 - snRNA gene predicted gene, 22286
Cpgi21713 9 47529695 to 47532013 2318 CpG island CpG island 21713
Tssr89368 9 47530091 to 47530099 8 - TSS region transcription start site region 89368
Cadm1 9 47530173 to 47857637 327464 + protein coding gene cell adhesion molecule 1
Tssr84921 9 47530343 to 47530362 19 + TSS region transcription start site region 84921
Tssr84922 9 47539467 to 47539471 4 + TSS region transcription start site region 84922
Tssr84923 9 47540615 to 47540634 19 + TSS region transcription start site region 84923
Tssr84924 9 47544197 to 47544219 22 + TSS region transcription start site region 84924
Tssr84925 9 47547937 to 47547947 10 + TSS region transcription start site region 84925
Tssr84926 9 47550372 to 47550385 13 + TSS region transcription start site region 84926
Tssr84927 9 47554355 to 47554359 4 + TSS region transcription start site region 84927
Tssr84928 9 47569209 to 47569232 23 + TSS region transcription start site region 84928
Tssr84929 9 47618637 to 47618681 44 + TSS region transcription start site region 84929
Tssr84930 9 47623288 to 47623291 3 + TSS region transcription start site region 84930
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
D9Mit130 9 47631726 to 47631842 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 130
Tssr84931 9 47636801 to 47636812 11 + TSS region transcription start site region 84931
Tssr84932 9 47643572 to 47643576 4 + TSS region transcription start site region 84932
Tssr84933 9 47644442 to 47644446 4 + TSS region transcription start site region 84933
D9Mit257 9 47644585 to 47644709 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 257
Tssr84934 9 47645077 to 47645097 20 + TSS region transcription start site region 84934
Tssr84935 9 47655116 to 47655151 35 + TSS region transcription start site region 84935
Tssr84936 9 47658366 to 47658403 37 + TSS region transcription start site region 84936
Tssr84937 9 47693260 to 47693281 21 + TSS region transcription start site region 84937
Tssr84938 9 47697413 to 47697428 15 + TSS region transcription start site region 84938
Tssr84939 9 47700045 to 47700053 8 + TSS region transcription start site region 84939
Tssr84940 9 47703560 to 47703596 36 + TSS region transcription start site region 84940
Tssr89369 9 47708443 to 47708467 24 - TSS region transcription start site region 89369
Tssr84941 9 47708897 to 47708902 5 + TSS region transcription start site region 84941
Tssr84942 9 47712779 to 47712787 8 + TSS region transcription start site region 84942
Tssr84943 9 47722015 to 47722030 15 + TSS region transcription start site region 84943
Tssr84944 9 47738692 to 47738700 8 + TSS region transcription start site region 84944
Tssr84945 9 47739704 to 47739708 4 + TSS region transcription start site region 84945
Tssr84946 9 47740155 to 47740160 5 + TSS region transcription start site region 84946
Tssr84947 9 47745402 to 47745408 6 + TSS region transcription start site region 84947
Tssr84948 9 47745910 to 47745930 20 + TSS region transcription start site region 84948
Gm47198 9 47771141 to 47773375 2234 + unclassified gene predicted gene, 47198
Gm47197 9 47773791 to 47776737 2946 - unclassified gene predicted gene, 47197
D9Ertd341e 9 47783111 to 47783335 224 DNA segment DNA segment, Chr 9, ERATO Doi 341, expressed
Tssr84949 9 47789779 to 47789814 35 + TSS region transcription start site region 84949
Tssr84950 9 47796002 to 47796006 4 + TSS region transcription start site region 84950
Gm10677 9 47799160 to 47818208 19048 - lncRNA gene predicted gene 10677
Tssr84951 9 47799469 to 47799500 31 + TSS region transcription start site region 84951
Tssr84952 9 47810081 to 47810093 12 + TSS region transcription start site region 84952
Tssr84953 9 47810095 to 47810109 14 + TSS region transcription start site region 84953
Tssr84954 9 47813789 to 47813813 24 + TSS region transcription start site region 84954
Tssr84955 9 47813831 to 47813843 12 + TSS region transcription start site region 84955
Tssr84956 9 47813903 to 47813923 20 + TSS region transcription start site region 84956
Tssr84957 9 47818720 to 47818751 31 + TSS region transcription start site region 84957
Vtbt7 9 47828617 to 47828723 106 QTL vertebral trabecular bone trait 7
D9Mit95 9 47828617 to 47828723 106 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 95
Tssr84958 9 47832938 to 47832944 6 + TSS region transcription start site region 84958
Tssr84959 9 47848214 to 47848253 39 + TSS region transcription start site region 84959
Tssr84960 9 47850288 to 47850317 29 + TSS region transcription start site region 84960
Tssr84961 9 47850533 to 47850554 21 + TSS region transcription start site region 84961
Tssr84962 9 47850638 to 47850685 47 + TSS region transcription start site region 84962
Tssr84963 9 47852403 to 47852420 17 + TSS region transcription start site region 84963
Tssr84964 9 47852449 to 47852495 46 + TSS region transcription start site region 84964
Tssr84965 9 47852555 to 47852572 17 + TSS region transcription start site region 84965
Tssr84966 9 47852595 to 47852612 17 + TSS region transcription start site region 84966
Tssr84967 9 47852621 to 47852637 16 + TSS region transcription start site region 84967
Tssr84968 9 47852843 to 47852892 49 + TSS region transcription start site region 84968
Tssr84969 9 47853101 to 47853123 22 + TSS region transcription start site region 84969
Tssr84970 9 47893258 to 47893307 49 + TSS region transcription start site region 84970
Tssr84971 9 47893310 to 47893320 10 + TSS region transcription start site region 84971
Tssr2861 9 47894177 to 47894208 31 - TSS region transcription start site region 2861
Gm32016 9 47939416 to 47950344 10928 + lncRNA gene predicted gene, 32016
Gm47213 9 47947880 to 47948161 281 - pseudogene predicted gene, 47213
Gm47215 9 47964476 to 47967312 2836 + unclassified gene predicted gene, 47215
Gm47236 9 48000353 to 48000798 445 - pseudogene predicted gene, 47236
A730065G17Rik 9 48049516 to 48071634 22118 + lincRNA gene RIKEN cDNA A730065G17 gene
Gm40518 9 48132748 to 48158748 26000 - lincRNA gene predicted gene, 40518
Tssr84972 9 48162008 to 48162045 37 + TSS region transcription start site region 84972
Nxpe4 9 48162023 to 48400025 238002 + protein coding gene neurexophilin and PC-esterase domain family, member 4
Cpgi21714 9 48266859 to 48267467 608 CpG island CpG island 21714
Tssr84973 9 48314424 to 48314443 19 + TSS region transcription start site region 84973
Tssr84974 9 48314449 to 48314505 56 + TSS region transcription start site region 84974
Nxpe2 9 48318006 to 48353454 35448 - protein coding gene neurexophilin and PC-esterase domain family, member 2
Tssr89370 9 48319371 to 48319376 5 - TSS region transcription start site region 89370
Tssr89371 9 48339722 to 48339754 32 - TSS region transcription start site region 89371
Tssr89372 9 48340623 to 48340634 11 - TSS region transcription start site region 89372
Tssr89373 9 48340652 to 48340668 16 - TSS region transcription start site region 89373
Tssr89374 9 48340682 to 48340685 3 - TSS region transcription start site region 89374
Tssr89375 9 48340694 to 48340697 3 - TSS region transcription start site region 89375
Tssr89376 9 48340774 to 48340791 17 - TSS region transcription start site region 89376
Tssr89377 9 48340792 to 48340809 17 - TSS region transcription start site region 89377
Tssr89378 9 48340814 to 48340842 28 - TSS region transcription start site region 89378
Tssr89379 9 48340845 to 48340860 15 - TSS region transcription start site region 89379
Tssr89380 9 48340876 to 48340893 17 - TSS region transcription start site region 89380