Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46458741-47543860

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ebao1 9 39724362 to 46528572 6804210 QTL epidermolysis bullosa acquisita onset 1
Tssr84913 9 46480349 to 46480359 10 + TSS region transcription start site region 84913
Gm47144 9 46486104 to 46505073 18969 - lincRNA gene predicted gene, 47144
Gm31432 9 46532757 to 46543376 10619 + lincRNA gene predicted gene, 31432
Gm22659 9 46562974 to 46563103 129 + snoRNA gene predicted gene, 22659
Gm48945 9 46607255 to 46612726 5471 + lincRNA gene predicted gene, 48945
Tssr84914 9 46618758 to 46618762 4 + TSS region transcription start site region 84914
Gm22805 9 46630113 to 46630219 106 - snRNA gene predicted gene, 22805
Gm31557 9 46666273 to 46674844 8571 + lincRNA gene predicted gene, 31557
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
D9Mit191 9 46686373 to 46686518 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 191
Gm8863 9 46713233 to 46714158 925 - pseudogene predicted gene 8863
Gm31614 9 46830358 to 46835945 5587 + lincRNA gene predicted gene, 31614
Gm39330 9 46839674 to 46844259 4585 + lncRNA gene predicted gene, 39330
Tssr84915 9 46913473 to 46913480 7 + TSS region transcription start site region 84915
Tssr84916 9 46913553 to 46913554 1 + TSS region transcription start site region 84916
Tssr84917 9 46913557 to 46913573 16 + TSS region transcription start site region 84917
Tssr84918 9 46913574 to 46913585 11 + TSS region transcription start site region 84918
Tssr84919 9 46913590 to 46913614 24 + TSS region transcription start site region 84919
2900052N01Rik 9 46913603 to 46927366 13763 + lincRNA gene RIKEN cDNA 2900052N01 gene
Tssr84920 9 46913619 to 46913632 13 + TSS region transcription start site region 84920
Gm39331 9 46955630 to 46957221 1591 + lncRNA gene predicted gene, 39331
Gm47153 9 46960235 to 46979053 18818 - lincRNA gene predicted gene, 47153
Gm4791 9 46998741 to 47003860 5119 + protein coding gene predicted gene 4791
Gf8 9 47007208 to 47007208 0 QTL gonadal fat pad weight 8
Gm31698 9 47119054 to 47183682 64628 - lincRNA gene predicted gene, 31698
D9Mit330 9 47141866 to 47141979 113 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 330
Ap5q 9 47141866 to 47141979 113 QTL alcohol preference 5 QTL
Cpgi21711 9 47167809 to 47167974 165 CpG island CpG island 21711
Gm31756 9 47232323 to 47240521 8198 + lncRNA gene predicted gene, 31756
Gm39332 9 47239051 to 47243240 4189 - lncRNA gene predicted gene, 39332
Gm31816 9 47259985 to 47368729 108744 - lincRNA gene predicted gene, 31816
Cpgi21712 9 47368085 to 47368309 224 CpG island CpG island 21712
Gm47160 9 47473049 to 47474918 1869 - unclassified gene predicted gene, 47160
Tssr89366 9 47474853 to 47474865 12 - TSS region transcription start site region 89366
Tssr89367 9 47474905 to 47474923 18 - TSS region transcription start site region 89367
Gm47161 9 47481628 to 47486506 4878 - unclassified gene predicted gene, 47161
Gm22286 9 47525616 to 47525722 106 - snRNA gene predicted gene, 22286
Cpgi21713 9 47529695 to 47532013 2318 CpG island CpG island 21713
Tssr89368 9 47530091 to 47530099 8 - TSS region transcription start site region 89368
Cadm1 9 47530173 to 47857637 327464 + protein coding gene cell adhesion molecule 1
Tssr84921 9 47530343 to 47530362 19 + TSS region transcription start site region 84921
Tssr84922 9 47539467 to 47539471 4 + TSS region transcription start site region 84922
Tssr84923 9 47540615 to 47540634 19 + TSS region transcription start site region 84923