Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46249688-46452040

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr84898 9 46256896 to 46256937 41 + TSS region transcription start site region 84898
Tssr89356 9 46257692 to 46257705 13 - TSS region transcription start site region 89356
Tssr84899 9 46268601 to 46268619 18 + TSS region transcription start site region 84899
Apoa5 9 46268633 to 46271919 3286 + protein coding gene apolipoprotein A-V
Tssr84900 9 46268689 to 46268703 14 + TSS region transcription start site region 84900
Tssr84901 9 46268707 to 46268727 20 + TSS region transcription start site region 84901
Tssr84902 9 46268749 to 46268755 6 + TSS region transcription start site region 84902
Tssr84903 9 46269069 to 46269084 15 + TSS region transcription start site region 84903
Tssr84904 9 46269908 to 46269923 15 + TSS region transcription start site region 84904
Cpgi21702 9 46269978 to 46270488 510 CpG island CpG island 21702
Gm47544 9 46270035 to 46271365 1330 - antisense lncRNA gene predicted gene, 47544
Tssr84905 9 46270168 to 46270179 11 + TSS region transcription start site region 84905
Tssr84906 9 46270264 to 46270278 14 + TSS region transcription start site region 84906
Tssr84907 9 46270308 to 46270332 24 + TSS region transcription start site region 84907
Tssr84908 9 46270552 to 46270573 21 + TSS region transcription start site region 84908
Cpgi21703 9 46273014 to 46273708 694 CpG island CpG island 21703
Zpr1 9 46273064 to 46282643 9579 + protein coding gene ZPR1 zinc finger
Tssr84909 9 46273148 to 46273201 53 + TSS region transcription start site region 84909
Tssr84910 9 46280672 to 46280676 4 + TSS region transcription start site region 84910
Cpgi21704 9 46282728 to 46283397 669 CpG island CpG island 21704
Tssr84911 9 46282997 to 46283024 27 + TSS region transcription start site region 84911
Bud13 9 46283008 to 46299110 16102 + protein coding gene BUD13 homolog
Tssr84912 9 46292055 to 46292099 44 + TSS region transcription start site region 84912
Tssr89357 9 46303075 to 46303089 14 - TSS region transcription start site region 89357
4931429L15Rik 9 46303361 to 46319986 16625 - protein coding gene RIKEN cDNA 4931429L15 gene
Tssr89358 9 46315900 to 46315901 1 - TSS region transcription start site region 89358
Tssr89359 9 46315904 to 46315914 10 - TSS region transcription start site region 89359
Tssr89360 9 46315921 to 46315948 27 - TSS region transcription start site region 89360
Tssr89361 9 46315950 to 46315965 15 - TSS region transcription start site region 89361
Gm39329 9 46319038 to 46331798 12760 + antisense lncRNA gene predicted gene, 39329
Tssr89362 9 46319984 to 46319990 6 - TSS region transcription start site region 89362
4930448E22Rik 9 46326393 to 46329527 3134 - lncRNA gene RIKEN cDNA 4930448E22 gene
Cpgi21705 9 46328643 to 46329150 507 CpG island CpG island 21705
Tssr89363 9 46328880 to 46328912 32 - TSS region transcription start site region 89363
Tssr89364 9 46328937 to 46328961 24 - TSS region transcription start site region 89364
Cpgi21706 9 46330273 to 46330593 320 CpG island CpG island 21706
Cpgi21707 9 46334588 to 46335056 468 CpG island CpG island 21707
Gm31374 9 46349688 to 46352040 2352 + lincRNA gene predicted gene, 31374
Cpgi21708 9 46352483 to 46352657 174 CpG island CpG island 21708
Chol11 9 46381631 to 46381774 143 QTL cholesterol 11
D9Mit1003 9 46381631 to 46381774 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1003
Hdlq89 9 46381631 to 46381774 143 QTL HDL QTL 89
Cpgi21709 9 46392990 to 46393284 294 CpG island CpG island 21709
Gm47141 9 46397362 to 46398943 1581 + lincRNA gene predicted gene, 47141
Tssr89365 9 46416164 to 46416172 8 - TSS region transcription start site region 89365
Cpgi21710 9 46443220 to 46444070 850 CpG island CpG island 21710