Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46235045-49165053

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353 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ebao1 9 39724362 to 46528572 6804210 QTL epidermolysis bullosa acquisita onset 1
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Apoc3 9 46233050 to 46235636 2586 - protein coding gene apolipoprotein C-III
Tssr89337 9 46235289 to 46235306 17 - TSS region transcription start site region 89337
Tssr89338 9 46235631 to 46235665 34 - TSS region transcription start site region 89338
Tssr89339 9 46235682 to 46235693 11 - TSS region transcription start site region 89339
Tssr89340 9 46235756 to 46235789 33 - TSS region transcription start site region 89340
Tssr89341 9 46237403 to 46237408 5 - TSS region transcription start site region 89341
Gm47528 9 46239841 to 46242032 2191 - unclassified gene predicted gene, 47528
Tssr84863 9 46240740 to 46240745 5 + TSS region transcription start site region 84863
Tssr84864 9 46240782 to 46240793 11 + TSS region transcription start site region 84864
Tssr2855 9 46240819 to 46240829 10 + TSS region transcription start site region 2855
Tssr2856 9 46240835 to 46240850 15 + TSS region transcription start site region 2856
Apoa4 9 46240844 to 46243458 2614 + protein coding gene apolipoprotein A-IV
Tssr84865 9 46240910 to 46240920 10 + TSS region transcription start site region 84865
Tssr2857 9 46240970 to 46240979 9 + TSS region transcription start site region 2857
Tssr2858 9 46241025 to 46241042 17 + TSS region transcription start site region 2858
Tssr84866 9 46241052 to 46241068 16 + TSS region transcription start site region 84866
Tssr2859 9 46241090 to 46241100 10 + TSS region transcription start site region 2859
Tssr2860 9 46241456 to 46241463 7 + TSS region transcription start site region 2860
Tssr84867 9 46241470 to 46241489 19 + TSS region transcription start site region 84867
Tssr84868 9 46241504 to 46241530 26 + TSS region transcription start site region 84868
Tssr89342 9 46241518 to 46241599 81 - TSS region transcription start site region 89342
Tssr84869 9 46241548 to 46241560 12 + TSS region transcription start site region 84869
Tssr84870 9 46242103 to 46242120 17 + TSS region transcription start site region 84870
Tssr84871 9 46242187 to 46242196 9 + TSS region transcription start site region 84871
Tssr84872 9 46242267 to 46242281 14 + TSS region transcription start site region 84872
Tssr84873 9 46242285 to 46242378 93 + TSS region transcription start site region 84873
Tssr89343 9 46242323 to 46242335 12 - TSS region transcription start site region 89343
Tssr84874 9 46242389 to 46242442 53 + TSS region transcription start site region 84874
Tssr89344 9 46242403 to 46242438 35 - TSS region transcription start site region 89344
Tssr84875 9 46242444 to 46242449 5 + TSS region transcription start site region 84875
Tssr84876 9 46242450 to 46242460 10 + TSS region transcription start site region 84876
Tssr89345 9 46242465 to 46242514 49 - TSS region transcription start site region 89345
Tssr84877 9 46242471 to 46242492 21 + TSS region transcription start site region 84877
Tssr84878 9 46242494 to 46242522 28 + TSS region transcription start site region 84878
Tssr84879 9 46242523 to 46242543 20 + TSS region transcription start site region 84879
Tssr89346 9 46242528 to 46242535 7 - TSS region transcription start site region 89346
Tssr89347 9 46242540 to 46242634 94 - TSS region transcription start site region 89347
Tssr84880 9 46242550 to 46242587 37 + TSS region transcription start site region 84880
Tssr84881 9 46242605 to 46242630 25 + TSS region transcription start site region 84881
Gm10680 9 46242621 to 46243529 908 - antisense lncRNA gene predicted gene 10680
Tssr84882 9 46242632 to 46242642 10 + TSS region transcription start site region 84882
Tssr89348 9 46242636 to 46242655 19 - TSS region transcription start site region 89348
Tssr84883 9 46242656 to 46242665 9 + TSS region transcription start site region 84883
Tssr89349 9 46242663 to 46242711 48 - TSS region transcription start site region 89349
Tssr84884 9 46242668 to 46242711 43 + TSS region transcription start site region 84884
Tssr84885 9 46242722 to 46242733 11 + TSS region transcription start site region 84885
Tssr89350 9 46242737 to 46242738 1 - TSS region transcription start site region 89350
Tssr84886 9 46242775 to 46242786 11 + TSS region transcription start site region 84886
Tssr84887 9 46242794 to 46242801 7 + TSS region transcription start site region 84887
Tssr89351 9 46242798 to 46242808 10 - TSS region transcription start site region 89351
Tssr89352 9 46242864 to 46242871 7 - TSS region transcription start site region 89352
Tssr84888 9 46242900 to 46242907 7 + TSS region transcription start site region 84888
Tssr84889 9 46242913 to 46242918 5 + TSS region transcription start site region 84889
Tssr89353 9 46242931 to 46242973 42 - TSS region transcription start site region 89353
Tssr84890 9 46243001 to 46243012 11 + TSS region transcription start site region 84890
Tssr84891 9 46243031 to 46243040 9 + TSS region transcription start site region 84891
Tssr84892 9 46243042 to 46243047 5 + TSS region transcription start site region 84892
Tssr84893 9 46243105 to 46243115 10 + TSS region transcription start site region 84893
Tssr84894 9 46243142 to 46243153 11 + TSS region transcription start site region 84894
Tssr84895 9 46243161 to 46243172 11 + TSS region transcription start site region 84895
Tssr89354 9 46243317 to 46243340 23 - TSS region transcription start site region 89354
Tssr84896 9 46243375 to 46243385 10 + TSS region transcription start site region 84896
Tssr84897 9 46243404 to 46243422 18 + TSS region transcription start site region 84897
Tssr89355 9 46243440 to 46243459 19 - TSS region transcription start site region 89355
Tssr84898 9 46256896 to 46256937 41 + TSS region transcription start site region 84898
Tssr89356 9 46257692 to 46257705 13 - TSS region transcription start site region 89356
Tssr84899 9 46268601 to 46268619 18 + TSS region transcription start site region 84899
Apoa5 9 46268633 to 46271919 3286 + protein coding gene apolipoprotein A-V
Tssr84900 9 46268689 to 46268703 14 + TSS region transcription start site region 84900
Tssr84901 9 46268707 to 46268727 20 + TSS region transcription start site region 84901
Tssr84902 9 46268749 to 46268755 6 + TSS region transcription start site region 84902
Tssr84903 9 46269069 to 46269084 15 + TSS region transcription start site region 84903
Tssr84904 9 46269908 to 46269923 15 + TSS region transcription start site region 84904
Cpgi21702 9 46269978 to 46270488 510 CpG island CpG island 21702
Gm47544 9 46270035 to 46271365 1330 - antisense lncRNA gene predicted gene, 47544
Tssr84905 9 46270168 to 46270179 11 + TSS region transcription start site region 84905
Tssr84906 9 46270264 to 46270278 14 + TSS region transcription start site region 84906
Tssr84907 9 46270308 to 46270332 24 + TSS region transcription start site region 84907
Tssr84908 9 46270552 to 46270573 21 + TSS region transcription start site region 84908
Cpgi21703 9 46273014 to 46273708 694 CpG island CpG island 21703
Zpr1 9 46273064 to 46282643 9579 + protein coding gene ZPR1 zinc finger
Tssr84909 9 46273148 to 46273201 53 + TSS region transcription start site region 84909
Tssr84910 9 46280672 to 46280676 4 + TSS region transcription start site region 84910
Cpgi21704 9 46282728 to 46283397 669 CpG island CpG island 21704
Tssr84911 9 46282997 to 46283024 27 + TSS region transcription start site region 84911
Bud13 9 46283008 to 46299110 16102 + protein coding gene BUD13 homolog
Tssr84912 9 46292055 to 46292099 44 + TSS region transcription start site region 84912
Tssr89357 9 46303075 to 46303089 14 - TSS region transcription start site region 89357
4931429L15Rik 9 46303361 to 46319986 16625 - protein coding gene RIKEN cDNA 4931429L15 gene
Tssr89358 9 46315900 to 46315901 1 - TSS region transcription start site region 89358
Tssr89359 9 46315904 to 46315914 10 - TSS region transcription start site region 89359
Tssr89360 9 46315921 to 46315948 27 - TSS region transcription start site region 89360
Tssr89361 9 46315950 to 46315965 15 - TSS region transcription start site region 89361
Gm39329 9 46319038 to 46331798 12760 + antisense lncRNA gene predicted gene, 39329
Tssr89362 9 46319984 to 46319990 6 - TSS region transcription start site region 89362
4930448E22Rik 9 46326393 to 46329527 3134 - lncRNA gene RIKEN cDNA 4930448E22 gene
Cpgi21705 9 46328643 to 46329150 507 CpG island CpG island 21705
Tssr89363 9 46328880 to 46328912 32 - TSS region transcription start site region 89363
Tssr89364 9 46328937 to 46328961 24 - TSS region transcription start site region 89364
Cpgi21706 9 46330273 to 46330593 320 CpG island CpG island 21706
Cpgi21707 9 46334588 to 46335056 468 CpG island CpG island 21707
Gm31374 9 46349688 to 46352040 2352 + lincRNA gene predicted gene, 31374
Cpgi21708 9 46352483 to 46352657 174 CpG island CpG island 21708
Chol11 9 46381631 to 46381774 143 QTL cholesterol 11
D9Mit1003 9 46381631 to 46381774 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1003
Hdlq89 9 46381631 to 46381774 143 QTL HDL QTL 89
Cpgi21709 9 46392990 to 46393284 294 CpG island CpG island 21709
Gm47141 9 46397362 to 46398943 1581 + lincRNA gene predicted gene, 47141
Tssr89365 9 46416164 to 46416172 8 - TSS region transcription start site region 89365
Cpgi21710 9 46443220 to 46444070 850 CpG island CpG island 21710
Tssr84913 9 46480349 to 46480359 10 + TSS region transcription start site region 84913
Gm47144 9 46486104 to 46505073 18969 - lincRNA gene predicted gene, 47144
Gm31432 9 46532757 to 46543376 10619 + lincRNA gene predicted gene, 31432
Gm22659 9 46562974 to 46563103 129 + snoRNA gene predicted gene, 22659
Gm48945 9 46607255 to 46612726 5471 + lincRNA gene predicted gene, 48945
Tssr84914 9 46618758 to 46618762 4 + TSS region transcription start site region 84914
Gm22805 9 46630113 to 46630219 106 - snRNA gene predicted gene, 22805
Gm31557 9 46666273 to 46674844 8571 + lincRNA gene predicted gene, 31557
D9Mit191 9 46686373 to 46686518 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 191
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Gm8863 9 46713233 to 46714158 925 - pseudogene predicted gene 8863
Gm31614 9 46830358 to 46835945 5587 + lincRNA gene predicted gene, 31614
Gm39330 9 46839674 to 46844259 4585 + lncRNA gene predicted gene, 39330
Tssr84915 9 46913473 to 46913480 7 + TSS region transcription start site region 84915
Tssr84916 9 46913553 to 46913554 1 + TSS region transcription start site region 84916
Tssr84917 9 46913557 to 46913573 16 + TSS region transcription start site region 84917
Tssr84918 9 46913574 to 46913585 11 + TSS region transcription start site region 84918
Tssr84919 9 46913590 to 46913614 24 + TSS region transcription start site region 84919
2900052N01Rik 9 46913603 to 46927366 13763 + lincRNA gene RIKEN cDNA 2900052N01 gene
Tssr84920 9 46913619 to 46913632 13 + TSS region transcription start site region 84920
Gm39331 9 46955630 to 46957221 1591 + lncRNA gene predicted gene, 39331
Gm47153 9 46960235 to 46979053 18818 - lincRNA gene predicted gene, 47153
Gm4791 9 46998741 to 47003860 5119 + protein coding gene predicted gene 4791
Gf8 9 47007208 to 47007208 0 QTL gonadal fat pad weight 8
Gm31698 9 47119054 to 47183682 64628 - lincRNA gene predicted gene, 31698
Ap5q 9 47141866 to 47141979 113 QTL alcohol preference 5 QTL
D9Mit330 9 47141866 to 47141979 113 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 330
Cpgi21711 9 47167809 to 47167974 165 CpG island CpG island 21711
Gm31756 9 47232323 to 47240521 8198 + lncRNA gene predicted gene, 31756
Gm39332 9 47239051 to 47243240 4189 - lncRNA gene predicted gene, 39332
Gm31816 9 47259985 to 47368729 108744 - lincRNA gene predicted gene, 31816
Cpgi21712 9 47368085 to 47368309 224 CpG island CpG island 21712
Gm47160 9 47473049 to 47474918 1869 - unclassified gene predicted gene, 47160
Tssr89366 9 47474853 to 47474865 12 - TSS region transcription start site region 89366
Tssr89367 9 47474905 to 47474923 18 - TSS region transcription start site region 89367
Gm47161 9 47481628 to 47486506 4878 - unclassified gene predicted gene, 47161
Gm22286 9 47525616 to 47525722 106 - snRNA gene predicted gene, 22286
Cpgi21713 9 47529695 to 47532013 2318 CpG island CpG island 21713
Tssr89368 9 47530091 to 47530099 8 - TSS region transcription start site region 89368
Cadm1 9 47530173 to 47857637 327464 + protein coding gene cell adhesion molecule 1
Tssr84921 9 47530343 to 47530362 19 + TSS region transcription start site region 84921
Tssr84922 9 47539467 to 47539471 4 + TSS region transcription start site region 84922
Tssr84923 9 47540615 to 47540634 19 + TSS region transcription start site region 84923
Tssr84924 9 47544197 to 47544219 22 + TSS region transcription start site region 84924
Tssr84925 9 47547937 to 47547947 10 + TSS region transcription start site region 84925
Tssr84926 9 47550372 to 47550385 13 + TSS region transcription start site region 84926
Tssr84927 9 47554355 to 47554359 4 + TSS region transcription start site region 84927
Tssr84928 9 47569209 to 47569232 23 + TSS region transcription start site region 84928
Tssr84929 9 47618637 to 47618681 44 + TSS region transcription start site region 84929
Tssr84930 9 47623288 to 47623291 3 + TSS region transcription start site region 84930
Fecq4 9 47631726 to 57897921 10266195 QTL fecundity QTL 4
D9Mit130 9 47631726 to 47631842 116 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 130
Tssr84931 9 47636801 to 47636812 11 + TSS region transcription start site region 84931
Tssr84932 9 47643572 to 47643576 4 + TSS region transcription start site region 84932
Tssr84933 9 47644442 to 47644446 4 + TSS region transcription start site region 84933
D9Mit257 9 47644585 to 47644709 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 257
Tssr84934 9 47645077 to 47645097 20 + TSS region transcription start site region 84934
Tssr84935 9 47655116 to 47655151 35 + TSS region transcription start site region 84935
Tssr84936 9 47658366 to 47658403 37 + TSS region transcription start site region 84936
Tssr84937 9 47693260 to 47693281 21 + TSS region transcription start site region 84937
Tssr84938 9 47697413 to 47697428 15 + TSS region transcription start site region 84938
Tssr84939 9 47700045 to 47700053 8 + TSS region transcription start site region 84939
Tssr84940 9 47703560 to 47703596 36 + TSS region transcription start site region 84940
Tssr89369 9 47708443 to 47708467 24 - TSS region transcription start site region 89369
Tssr84941 9 47708897 to 47708902 5 + TSS region transcription start site region 84941
Tssr84942 9 47712779 to 47712787 8 + TSS region transcription start site region 84942
Tssr84943 9 47722015 to 47722030 15 + TSS region transcription start site region 84943
Tssr84944 9 47738692 to 47738700 8 + TSS region transcription start site region 84944
Tssr84945 9 47739704 to 47739708 4 + TSS region transcription start site region 84945
Tssr84946 9 47740155 to 47740160 5 + TSS region transcription start site region 84946
Tssr84947 9 47745402 to 47745408 6 + TSS region transcription start site region 84947
Tssr84948 9 47745910 to 47745930 20 + TSS region transcription start site region 84948
Gm47198 9 47771141 to 47773375 2234 + unclassified gene predicted gene, 47198
Gm47197 9 47773791 to 47776737 2946 - unclassified gene predicted gene, 47197
D9Ertd341e 9 47783111 to 47783335 224 DNA segment DNA segment, Chr 9, ERATO Doi 341, expressed
Tssr84949 9 47789779 to 47789814 35 + TSS region transcription start site region 84949
Tssr84950 9 47796002 to 47796006 4 + TSS region transcription start site region 84950
Gm10677 9 47799160 to 47818208 19048 - lncRNA gene predicted gene 10677
Tssr84951 9 47799469 to 47799500 31 + TSS region transcription start site region 84951
Tssr84952 9 47810081 to 47810093 12 + TSS region transcription start site region 84952
Tssr84953 9 47810095 to 47810109 14 + TSS region transcription start site region 84953
Tssr84954 9 47813789 to 47813813 24 + TSS region transcription start site region 84954
Tssr84955 9 47813831 to 47813843 12 + TSS region transcription start site region 84955
Tssr84956 9 47813903 to 47813923 20 + TSS region transcription start site region 84956
Tssr84957 9 47818720 to 47818751 31 + TSS region transcription start site region 84957
Vtbt7 9 47828617 to 47828723 106 QTL vertebral trabecular bone trait 7
D9Mit95 9 47828617 to 47828723 106 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 95
Tssr84958 9 47832938 to 47832944 6 + TSS region transcription start site region 84958