Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46065001-46395022

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sik3 9 46012820 to 46224194 211374 + protein coding gene SIK family kinase 3
Gm46110 9 46054070 to 46072810 18740 - lncRNA gene predicted gene, 46110
Tssr84827 9 46083871 to 46083898 27 + TSS region transcription start site region 84827
Tssr89310 9 46112325 to 46112354 29 - TSS region transcription start site region 89310
D9Ertd26e 9 46115851 to 46116053 202 DNA segment DNA segment, Chr 9, ERATO Doi 26, expressed
Tssr84828 9 46119018 to 46119022 4 + TSS region transcription start site region 84828
Tssr84829 9 46127233 to 46127237 4 + TSS region transcription start site region 84829
Tssr89311 9 46154590 to 46154594 4 - TSS region transcription start site region 89311
Gm18915 9 46161026 to 46161946 920 + pseudogene predicted gene, 18915
Tssr84830 9 46173194 to 46173236 42 + TSS region transcription start site region 84830
Tssr89312 9 46175475 to 46175492 17 - TSS region transcription start site region 89312
Tssr2854 9 46197082 to 46197094 12 + TSS region transcription start site region 2854
Tssr84831 9 46207607 to 46207622 15 + TSS region transcription start site region 84831
Tssr84832 9 46207937 to 46207946 9 + TSS region transcription start site region 84832
Tssr84833 9 46208520 to 46208524 4 + TSS region transcription start site region 84833
Tssr84834 9 46210596 to 46210607 11 + TSS region transcription start site region 84834
Tssr84835 9 46210708 to 46210725 17 + TSS region transcription start site region 84835
Tssr84836 9 46215962 to 46215972 10 + TSS region transcription start site region 84836
Tssr84837 9 46216123 to 46216132 9 + TSS region transcription start site region 84837
D9Jpk1 9 46218649 to 46218755 106 DNA segment DNA segment, Chr 9, Japan, Kominami 1
Tssr84838 9 46225490 to 46225517 27 + TSS region transcription start site region 84838
Tssr84839 9 46228347 to 46228374 27 + TSS region transcription start site region 84839
Apoa1 9 46228630 to 46230469 1839 + protein coding gene apolipoprotein A-I
Tssr84840 9 46228701 to 46228714 13 + TSS region transcription start site region 84840
Tssr84841 9 46228833 to 46228844 11 + TSS region transcription start site region 84841
Tssr84842 9 46228928 to 46228946 18 + TSS region transcription start site region 84842
Tssr84843 9 46228951 to 46228980 29 + TSS region transcription start site region 84843
Tssr84844 9 46229110 to 46229154 44 + TSS region transcription start site region 84844
Tssr84845 9 46229162 to 46229191 29 + TSS region transcription start site region 84845
Tssr84846 9 46229201 to 46229246 45 + TSS region transcription start site region 84846
Tssr84847 9 46229822 to 46229908 86 + TSS region transcription start site region 84847
Tssr84848 9 46229909 to 46229986 77 + TSS region transcription start site region 84848
Tssr89313 9 46229934 to 46229975 41 - TSS region transcription start site region 89313
Cpgi21701 9 46229946 to 46230505 559 CpG island CpG island 21701
Tssr89314 9 46229994 to 46230003 9 - TSS region transcription start site region 89314
Tssr84849 9 46230001 to 46230022 21 + TSS region transcription start site region 84849
Tssr89315 9 46230008 to 46230026 18 - TSS region transcription start site region 89315
Tssr89316 9 46230036 to 46230046 10 - TSS region transcription start site region 89316
Tssr84850 9 46230041 to 46230064 23 + TSS region transcription start site region 84850
Tssr89317 9 46230048 to 46230055 7 - TSS region transcription start site region 89317
Tssr89318 9 46230070 to 46230079 9 - TSS region transcription start site region 89318
Tssr89319 9 46230084 to 46230089 5 - TSS region transcription start site region 89319
Tssr84851 9 46230085 to 46230099 14 + TSS region transcription start site region 84851
Tssr89320 9 46230093 to 46230102 9 - TSS region transcription start site region 89320
Tssr84852 9 46230104 to 46230196 92 + TSS region transcription start site region 84852
Tssr89321 9 46230115 to 46230127 12 - TSS region transcription start site region 89321
Tssr89322 9 46230161 to 46230210 49 - TSS region transcription start site region 89322
Tssr84853 9 46230202 to 46230230 28 + TSS region transcription start site region 84853
Tssr89323 9 46230226 to 46230262 36 - TSS region transcription start site region 89323
Tssr84854 9 46230232 to 46230243 11 + TSS region transcription start site region 84854
Tssr84855 9 46230251 to 46230263 12 + TSS region transcription start site region 84855
Tssr84856 9 46230267 to 46230274 7 + TSS region transcription start site region 84856
Tssr89324 9 46230276 to 46230290 14 - TSS region transcription start site region 89324
Tssr89325 9 46230300 to 46230315 15 - TSS region transcription start site region 89325
Tssr89326 9 46230340 to 46230349 9 - TSS region transcription start site region 89326
Tssr84857 9 46230385 to 46230396 11 + TSS region transcription start site region 84857
Tssr84858 9 46230404 to 46230433 29 + TSS region transcription start site region 84858
Tssr89327 9 46230461 to 46230463 2 - TSS region transcription start site region 89327
Apoc3 9 46233050 to 46235636 2586 - protein coding gene apolipoprotein C-III
Tssr89328 9 46233099 to 46233123 24 - TSS region transcription start site region 89328
Tssr84859 9 46233132 to 46233189 57 + TSS region transcription start site region 84859
Tssr89329 9 46233170 to 46233203 33 - TSS region transcription start site region 89329
Tssr89330 9 46233216 to 46233232 16 - TSS region transcription start site region 89330
Tssr89331 9 46233249 to 46233278 29 - TSS region transcription start site region 89331
Tssr84860 9 46233271 to 46233297 26 + TSS region transcription start site region 84860
Tssr84861 9 46233317 to 46233326 9 + TSS region transcription start site region 84861
Tssr89332 9 46233324 to 46233351 27 - TSS region transcription start site region 89332
D9Mit93 9 46233355 to 46233567 212 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 93
Tssr84862 9 46234412 to 46234437 25 + TSS region transcription start site region 84862
Tssr89333 9 46234452 to 46234471 19 - TSS region transcription start site region 89333
Tssr89334 9 46234473 to 46234478 5 - TSS region transcription start site region 89334
Tssr89335 9 46234514 to 46234533 19 - TSS region transcription start site region 89335
Tssr89336 9 46234687 to 46234743 56 - TSS region transcription start site region 89336
Tssr89337 9 46235289 to 46235306 17 - TSS region transcription start site region 89337
Tssr89338 9 46235631 to 46235665 34 - TSS region transcription start site region 89338
Tssr89339 9 46235682 to 46235693 11 - TSS region transcription start site region 89339
Tssr89340 9 46235756 to 46235789 33 - TSS region transcription start site region 89340
Tssr89341 9 46237403 to 46237408 5 - TSS region transcription start site region 89341
Gm47528 9 46239841 to 46242032 2191 - unclassified gene predicted gene, 47528
Tssr84863 9 46240740 to 46240745 5 + TSS region transcription start site region 84863
Tssr84864 9 46240782 to 46240793 11 + TSS region transcription start site region 84864
Tssr2855 9 46240819 to 46240829 10 + TSS region transcription start site region 2855
Tssr2856 9 46240835 to 46240850 15 + TSS region transcription start site region 2856
Apoa4 9 46240844 to 46243458 2614 + protein coding gene apolipoprotein A-IV
Tssr84865 9 46240910 to 46240920 10 + TSS region transcription start site region 84865
Tssr2857 9 46240970 to 46240979 9 + TSS region transcription start site region 2857
Tssr2858 9 46241025 to 46241042 17 + TSS region transcription start site region 2858
Tssr84866 9 46241052 to 46241068 16 + TSS region transcription start site region 84866
Tssr2859 9 46241090 to 46241100 10 + TSS region transcription start site region 2859
Tssr2860 9 46241456 to 46241463 7 + TSS region transcription start site region 2860
Tssr84867 9 46241470 to 46241489 19 + TSS region transcription start site region 84867
Tssr84868 9 46241504 to 46241530 26 + TSS region transcription start site region 84868
Tssr89342 9 46241518 to 46241599 81 - TSS region transcription start site region 89342
Tssr84869 9 46241548 to 46241560 12 + TSS region transcription start site region 84869
Tssr84870 9 46242103 to 46242120 17 + TSS region transcription start site region 84870
Tssr84871 9 46242187 to 46242196 9 + TSS region transcription start site region 84871
Tssr84872 9 46242267 to 46242281 14 + TSS region transcription start site region 84872
Tssr84873 9 46242285 to 46242378 93 + TSS region transcription start site region 84873
Tssr89343 9 46242323 to 46242335 12 - TSS region transcription start site region 89343
Tssr84874 9 46242389 to 46242442 53 + TSS region transcription start site region 84874
Tssr89344 9 46242403 to 46242438 35 - TSS region transcription start site region 89344
Tssr84875 9 46242444 to 46242449 5 + TSS region transcription start site region 84875
Tssr84876 9 46242450 to 46242460 10 + TSS region transcription start site region 84876
Tssr89345 9 46242465 to 46242514 49 - TSS region transcription start site region 89345
Tssr84877 9 46242471 to 46242492 21 + TSS region transcription start site region 84877
Tssr84878 9 46242494 to 46242522 28 + TSS region transcription start site region 84878
Tssr84879 9 46242523 to 46242543 20 + TSS region transcription start site region 84879
Tssr89346 9 46242528 to 46242535 7 - TSS region transcription start site region 89346
Tssr89347 9 46242540 to 46242634 94 - TSS region transcription start site region 89347
Tssr84880 9 46242550 to 46242587 37 + TSS region transcription start site region 84880
Tssr84881 9 46242605 to 46242630 25 + TSS region transcription start site region 84881
Gm10680 9 46242621 to 46243529 908 - antisense lncRNA gene predicted gene 10680
Tssr84882 9 46242632 to 46242642 10 + TSS region transcription start site region 84882
Tssr89348 9 46242636 to 46242655 19 - TSS region transcription start site region 89348
Tssr84883 9 46242656 to 46242665 9 + TSS region transcription start site region 84883
Tssr89349 9 46242663 to 46242711 48 - TSS region transcription start site region 89349
Tssr84884 9 46242668 to 46242711 43 + TSS region transcription start site region 84884
Tssr84885 9 46242722 to 46242733 11 + TSS region transcription start site region 84885
Tssr89350 9 46242737 to 46242738 1 - TSS region transcription start site region 89350
Tssr84886 9 46242775 to 46242786 11 + TSS region transcription start site region 84886
Tssr84887 9 46242794 to 46242801 7 + TSS region transcription start site region 84887
Tssr89351 9 46242798 to 46242808 10 - TSS region transcription start site region 89351
Tssr89352 9 46242864 to 46242871 7 - TSS region transcription start site region 89352
Tssr84888 9 46242900 to 46242907 7 + TSS region transcription start site region 84888
Tssr84889 9 46242913 to 46242918 5 + TSS region transcription start site region 84889
Tssr89353 9 46242931 to 46242973 42 - TSS region transcription start site region 89353
Tssr84890 9 46243001 to 46243012 11 + TSS region transcription start site region 84890
Tssr84891 9 46243031 to 46243040 9 + TSS region transcription start site region 84891
Tssr84892 9 46243042 to 46243047 5 + TSS region transcription start site region 84892
Tssr84893 9 46243105 to 46243115 10 + TSS region transcription start site region 84893
Tssr84894 9 46243142 to 46243153 11 + TSS region transcription start site region 84894
Tssr84895 9 46243161 to 46243172 11 + TSS region transcription start site region 84895
Tssr89354 9 46243317 to 46243340 23 - TSS region transcription start site region 89354
Tssr84896 9 46243375 to 46243385 10 + TSS region transcription start site region 84896
Tssr84897 9 46243404 to 46243422 18 + TSS region transcription start site region 84897
Tssr89355 9 46243440 to 46243459 19 - TSS region transcription start site region 89355
Tssr84898 9 46256896 to 46256937 41 + TSS region transcription start site region 84898
Tssr89356 9 46257692 to 46257705 13 - TSS region transcription start site region 89356
Tssr84899 9 46268601 to 46268619 18 + TSS region transcription start site region 84899
Apoa5 9 46268633 to 46271919 3286 + protein coding gene apolipoprotein A-V
Tssr84900 9 46268689 to 46268703 14 + TSS region transcription start site region 84900
Tssr84901 9 46268707 to 46268727 20 + TSS region transcription start site region 84901
Tssr84902 9 46268749 to 46268755 6 + TSS region transcription start site region 84902
Tssr84903 9 46269069 to 46269084 15 + TSS region transcription start site region 84903
Tssr84904 9 46269908 to 46269923 15 + TSS region transcription start site region 84904
Cpgi21702 9 46269978 to 46270488 510 CpG island CpG island 21702
Gm47544 9 46270035 to 46271365 1330 - antisense lncRNA gene predicted gene, 47544
Tssr84905 9 46270168 to 46270179 11 + TSS region transcription start site region 84905
Tssr84906 9 46270264 to 46270278 14 + TSS region transcription start site region 84906
Tssr84907 9 46270308 to 46270332 24 + TSS region transcription start site region 84907
Tssr84908 9 46270552 to 46270573 21 + TSS region transcription start site region 84908
Cpgi21703 9 46273014 to 46273708 694 CpG island CpG island 21703
Zpr1 9 46273064 to 46282643 9579 + protein coding gene ZPR1 zinc finger
Tssr84909 9 46273148 to 46273201 53 + TSS region transcription start site region 84909
Tssr84910 9 46280672 to 46280676 4 + TSS region transcription start site region 84910
Cpgi21704 9 46282728 to 46283397 669 CpG island CpG island 21704
Tssr84911 9 46282997 to 46283024 27 + TSS region transcription start site region 84911
Bud13 9 46283008 to 46299110 16102 + protein coding gene BUD13 homolog
Tssr84912 9 46292055 to 46292099 44 + TSS region transcription start site region 84912
Tssr89357 9 46303075 to 46303089 14 - TSS region transcription start site region 89357
4931429L15Rik 9 46303361 to 46319986 16625 - protein coding gene RIKEN cDNA 4931429L15 gene
Tssr89358 9 46315900 to 46315901 1 - TSS region transcription start site region 89358
Tssr89359 9 46315904 to 46315914 10 - TSS region transcription start site region 89359
Tssr89360 9 46315921 to 46315948 27 - TSS region transcription start site region 89360
Tssr89361 9 46315950 to 46315965 15 - TSS region transcription start site region 89361
Gm39329 9 46319038 to 46331798 12760 + antisense lncRNA gene predicted gene, 39329
Tssr89362 9 46319984 to 46319990 6 - TSS region transcription start site region 89362
4930448E22Rik 9 46326393 to 46329527 3134 - lncRNA gene RIKEN cDNA 4930448E22 gene
Cpgi21705 9 46328643 to 46329150 507 CpG island CpG island 21705
Tssr89363 9 46328880 to 46328912 32 - TSS region transcription start site region 89363
Tssr89364 9 46328937 to 46328961 24 - TSS region transcription start site region 89364
Cpgi21706 9 46330273 to 46330593 320 CpG island CpG island 21706
Cpgi21707 9 46334588 to 46335056 468 CpG island CpG island 21707
Gm31374 9 46349688 to 46352040 2352 + lincRNA gene predicted gene, 31374
Cpgi21708 9 46352483 to 46352657 174 CpG island CpG island 21708
D9Mit1003 9 46381631 to 46381774 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1003
Chol11 9 46381631 to 46381774 143 QTL cholesterol 11
Hdlq89 9 46381631 to 46381774 143 QTL HDL QTL 89
Cpgi21709 9 46392990 to 46393284 294 CpG island CpG island 21709