Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46003416-46103427

16 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pafah1b2	9	45965311 to 46012685	47374	-	protein coding gene	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
Tssr84821	9	46009261 to 46009269	8	+	TSS region	transcription start site region 84821
Tssr89307	9	46009780 to 46009782	2	-	TSS region	transcription start site region 89307
Cpgi21700	9	46012148 to 46013605	1457		CpG island	CpG island 21700
Tssr89308	9	46012611 to 46012693	82	-	TSS region	transcription start site region 89308
Tssr84822	9	46012810 to 46012821	11	+	TSS region	transcription start site region 84822
Sik3	9	46012820 to 46224194	211374	+	protein coding gene	SIK family kinase 3
Tssr84823	9	46012822 to 46012860	38	+	TSS region	transcription start site region 84823
Tssr84824	9	46022446 to 46022457	11	+	TSS region	transcription start site region 84824
Tssr89309	9	46031227 to 46031228	1	-	TSS region	transcription start site region 89309
Tssr84825	9	46047966 to 46047970	4	+	TSS region	transcription start site region 84825
Tssr2852	9	46049815 to 46049829	14	+	TSS region	transcription start site region 2852
Tssr84826	9	46050112 to 46050116	4	+	TSS region	transcription start site region 84826
Tssr2853	9	46053416 to 46053427	11	+	TSS region	transcription start site region 2853
Gm46110	9	46054070 to 46072810	18740	-	lncRNA gene	predicted gene, 46110
Tssr84827	9	46083871 to 46083898	27	+	TSS region	transcription start site region 84827