Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 9:46002820-46234194

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81 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pafah1b2 9 45965311 to 46012690 47379 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
Tssr84821 9 46009261 to 46009269 8 + TSS region transcription start site region 84821
Tssr89307 9 46009780 to 46009782 2 - TSS region transcription start site region 89307
Cpgi21700 9 46012148 to 46013605 1457 CpG island CpG island 21700
Tssr89308 9 46012611 to 46012693 82 - TSS region transcription start site region 89308
Tssr84822 9 46012810 to 46012821 11 + TSS region transcription start site region 84822
Sik3 9 46012820 to 46224194 211374 + protein coding gene SIK family kinase 3
Tssr84823 9 46012822 to 46012860 38 + TSS region transcription start site region 84823
Tssr84824 9 46022446 to 46022457 11 + TSS region transcription start site region 84824
Tssr89309 9 46031227 to 46031228 1 - TSS region transcription start site region 89309
Gm46110 9 46047940 to 46079668 31728 - lncRNA gene predicted gene, 46110
Tssr84825 9 46047966 to 46047970 4 + TSS region transcription start site region 84825
Tssr2852 9 46049815 to 46049829 14 + TSS region transcription start site region 2852
Tssr84826 9 46050112 to 46050116 4 + TSS region transcription start site region 84826
Tssr2853 9 46053416 to 46053427 11 + TSS region transcription start site region 2853
Tssr84827 9 46083871 to 46083898 27 + TSS region transcription start site region 84827
Tssr89310 9 46112325 to 46112354 29 - TSS region transcription start site region 89310
D9Ertd26e 9 46115851 to 46116053 202 DNA segment DNA segment, Chr 9, ERATO Doi 26, expressed
Tssr84828 9 46119018 to 46119022 4 + TSS region transcription start site region 84828
Tssr84829 9 46127233 to 46127237 4 + TSS region transcription start site region 84829
Tssr89311 9 46154590 to 46154594 4 - TSS region transcription start site region 89311
Pou5f1-rs9 9 46161026 to 46161946 920 + pseudogene POU domain, class 5, transcription factor 1, related sequence 9
Tssr84830 9 46173194 to 46173236 42 + TSS region transcription start site region 84830
Tssr89312 9 46175475 to 46175492 17 - TSS region transcription start site region 89312
Tssr2854 9 46197082 to 46197094 12 + TSS region transcription start site region 2854
Tssr84831 9 46207607 to 46207622 15 + TSS region transcription start site region 84831
Tssr84832 9 46207937 to 46207946 9 + TSS region transcription start site region 84832
Tssr84833 9 46208520 to 46208524 4 + TSS region transcription start site region 84833
Tssr84834 9 46210596 to 46210607 11 + TSS region transcription start site region 84834
Tssr84835 9 46210708 to 46210725 17 + TSS region transcription start site region 84835
Tssr84836 9 46215962 to 46215972 10 + TSS region transcription start site region 84836
Tssr84837 9 46216123 to 46216132 9 + TSS region transcription start site region 84837
D9Jpk1 9 46218649 to 46218755 106 DNA segment DNA segment, Chr 9, Japan, Kominami 1
Tssr84838 9 46225490 to 46225517 27 + TSS region transcription start site region 84838
Tssr84839 9 46228347 to 46228374 27 + TSS region transcription start site region 84839
Apoa1 9 46228630 to 46230469 1839 + protein coding gene apolipoprotein A-I
Tssr84840 9 46228701 to 46228714 13 + TSS region transcription start site region 84840
Tssr84841 9 46228833 to 46228844 11 + TSS region transcription start site region 84841
Tssr84842 9 46228928 to 46228946 18 + TSS region transcription start site region 84842
Tssr84843 9 46228951 to 46228980 29 + TSS region transcription start site region 84843
Tssr84844 9 46229110 to 46229154 44 + TSS region transcription start site region 84844
Tssr84845 9 46229162 to 46229191 29 + TSS region transcription start site region 84845
Tssr84846 9 46229201 to 46229246 45 + TSS region transcription start site region 84846
Tssr84847 9 46229822 to 46229908 86 + TSS region transcription start site region 84847
Tssr84848 9 46229909 to 46229986 77 + TSS region transcription start site region 84848
Tssr89313 9 46229934 to 46229975 41 - TSS region transcription start site region 89313
Cpgi21701 9 46229946 to 46230505 559 CpG island CpG island 21701
Tssr89314 9 46229994 to 46230003 9 - TSS region transcription start site region 89314
Tssr84849 9 46230001 to 46230022 21 + TSS region transcription start site region 84849
Tssr89315 9 46230008 to 46230026 18 - TSS region transcription start site region 89315
Tssr89316 9 46230036 to 46230046 10 - TSS region transcription start site region 89316
Tssr84850 9 46230041 to 46230064 23 + TSS region transcription start site region 84850
Tssr89317 9 46230048 to 46230055 7 - TSS region transcription start site region 89317
Tssr89318 9 46230070 to 46230079 9 - TSS region transcription start site region 89318
Tssr89319 9 46230084 to 46230089 5 - TSS region transcription start site region 89319
Tssr84851 9 46230085 to 46230099 14 + TSS region transcription start site region 84851
Tssr89320 9 46230093 to 46230102 9 - TSS region transcription start site region 89320
Tssr84852 9 46230104 to 46230196 92 + TSS region transcription start site region 84852
Tssr89321 9 46230115 to 46230127 12 - TSS region transcription start site region 89321
Tssr89322 9 46230161 to 46230210 49 - TSS region transcription start site region 89322
Tssr84853 9 46230202 to 46230230 28 + TSS region transcription start site region 84853
Tssr89323 9 46230226 to 46230262 36 - TSS region transcription start site region 89323
Tssr84854 9 46230232 to 46230243 11 + TSS region transcription start site region 84854
Tssr84855 9 46230251 to 46230263 12 + TSS region transcription start site region 84855
Tssr84856 9 46230267 to 46230274 7 + TSS region transcription start site region 84856
Tssr89324 9 46230276 to 46230290 14 - TSS region transcription start site region 89324
Tssr89325 9 46230300 to 46230315 15 - TSS region transcription start site region 89325
Tssr89326 9 46230340 to 46230349 9 - TSS region transcription start site region 89326
Tssr84857 9 46230385 to 46230396 11 + TSS region transcription start site region 84857
Tssr84858 9 46230404 to 46230433 29 + TSS region transcription start site region 84858
Tssr89327 9 46230461 to 46230463 2 - TSS region transcription start site region 89327
Apoc3 9 46233050 to 46235636 2586 - protein coding gene apolipoprotein C-III
Tssr89328 9 46233099 to 46233123 24 - TSS region transcription start site region 89328
Tssr84859 9 46233132 to 46233189 57 + TSS region transcription start site region 84859
Tssr89329 9 46233170 to 46233203 33 - TSS region transcription start site region 89329
Tssr89330 9 46233216 to 46233232 16 - TSS region transcription start site region 89330
Tssr89331 9 46233249 to 46233278 29 - TSS region transcription start site region 89331
Tssr84860 9 46233271 to 46233297 26 + TSS region transcription start site region 84860
Tssr84861 9 46233317 to 46233326 9 + TSS region transcription start site region 84861
Tssr89332 9 46233324 to 46233351 27 - TSS region transcription start site region 89332
D9Mit93 9 46233355 to 46233567 212 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 93