Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:4585313-7559278

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gria4 9 4417896 to 4796234 378338 - protein coding gene glutamate receptor, ionotropic, AMPA4 (alpha 4)
Tssr88039 9 4635267 to 4635271 4 - TSS region transcription start site region 88039
Tssr88040 9 4765243 to 4765247 4 - TSS region transcription start site region 88040
Cpgi21336 9 4795545 to 4796457 912 CpG island CpG island 21336
Tssr88041 9 4795561 to 4795644 83 - TSS region transcription start site region 88041
Tssr88042 9 4795914 to 4795928 14 - TSS region transcription start site region 88042
Tssr88043 9 4795951 to 4795964 13 - TSS region transcription start site region 88043
Tssr88044 9 4795969 to 4795987 18 - TSS region transcription start site region 88044
Tssr88045 9 4796022 to 4796033 11 - TSS region transcription start site region 88045
Tssr88046 9 4796034 to 4796066 32 - TSS region transcription start site region 88046
Tssr88047 9 4796070 to 4796081 11 - TSS region transcription start site region 88047
Tssr88048 9 4796141 to 4796159 18 - TSS region transcription start site region 88048
Tssr88049 9 4796160 to 4796195 35 - TSS region transcription start site region 88049
Tssr88050 9 4796196 to 4796216 20 - TSS region transcription start site region 88050
Tssr88051 9 4796218 to 4796267 49 - TSS region transcription start site region 88051
Gm46100 9 4796337 to 4800157 3820 + lncRNA gene predicted gene, 46100
Cpgi21337 9 4977605 to 4977809 204 CpG island CpG island 21337
Gm7390 9 4977959 to 4979174 1215 + pseudogene predicted gene 7390
Gm24896 9 5111399 to 5111533 134 + snoRNA gene predicted gene, 24896
Gm40508 9 5127223 to 5155287 28064 + lncRNA gene predicted gene, 40508
Gm31429 9 5157038 to 5166906 9868 + lncRNA gene predicted gene, 31429
Gm31492 9 5159386 to 5171522 12136 - lncRNA gene predicted gene, 31492
Tssr83630 9 5297999 to 5298001 2 + TSS region transcription start site region 83630
Casp1 9 5298517 to 5307265 8748 + protein coding gene caspase 1
Tssr83631 9 5298669 to 5298694 25 + TSS region transcription start site region 83631
Tssr83632 9 5298767 to 5298781 14 + TSS region transcription start site region 83632
Tssr83633 9 5299174 to 5299216 42 + TSS region transcription start site region 83633
Tssr83634 9 5299245 to 5299262 17 + TSS region transcription start site region 83634
Tssr83635 9 5299267 to 5299283 16 + TSS region transcription start site region 83635
Tssr83636 9 5299290 to 5299307 17 + TSS region transcription start site region 83636
Tssr83637 9 5299402 to 5299415 13 + TSS region transcription start site region 83637
Tssr83638 9 5299433 to 5299445 12 + TSS region transcription start site region 83638
Tssr83639 9 5299476 to 5299501 25 + TSS region transcription start site region 83639
Tssr83640 9 5301144 to 5301172 28 + TSS region transcription start site region 83640
Tssr83641 9 5303073 to 5303100 27 + TSS region transcription start site region 83641
Tssr83642 9 5303550 to 5303563 13 + TSS region transcription start site region 83642
Tssr83643 9 5303631 to 5303653 22 + TSS region transcription start site region 83643
Tssr83644 9 5304322 to 5304336 14 + TSS region transcription start site region 83644
Tssr83645 9 5306141 to 5306161 20 + TSS region transcription start site region 83645
Casp4 9 5308828 to 5336783 27955 + protein coding gene caspase 4, apoptosis-related cysteine peptidase
Tssr83646 9 5308842 to 5308873 31 + TSS region transcription start site region 83646
Tssr83647 9 5309658 to 5309679 21 + TSS region transcription start site region 83647
Tssr83648 9 5310306 to 5310313 7 + TSS region transcription start site region 83648
Tssr88052 9 5311426 to 5311447 21 - TSS region transcription start site region 88052
Tssr88053 9 5311471 to 5311479 8 - TSS region transcription start site region 88053
Tssr88054 9 5311489 to 5311504 15 - TSS region transcription start site region 88054
Tssr83649 9 5311985 to 5311998 13 + TSS region transcription start site region 83649
Tssr83650 9 5312159 to 5312172 13 + TSS region transcription start site region 83650
Tssr83651 9 5312856 to 5312867 11 + TSS region transcription start site region 83651
Tssr83652 9 5312869 to 5312880 11 + TSS region transcription start site region 83652
Tssr83653 9 5312883 to 5312898 15 + TSS region transcription start site region 83653
Tssr83654 9 5312912 to 5312924 12 + TSS region transcription start site region 83654
Tssr83655 9 5321297 to 5321311 14 + TSS region transcription start site region 83655
Tssr83656 9 5323709 to 5323723 14 + TSS region transcription start site region 83656
Tssr83657 9 5323793 to 5323806 13 + TSS region transcription start site region 83657
Tssr83658 9 5327222 to 5327238 16 + TSS region transcription start site region 83658
Tssr83659 9 5327278 to 5327295 17 + TSS region transcription start site region 83659
Tssr83660 9 5332819 to 5332833 14 + TSS region transcription start site region 83660
Tssr83661 9 5335408 to 5335424 16 + TSS region transcription start site region 83661
Tssr83662 9 5345414 to 5345435 21 + TSS region transcription start site region 83662
Casp12 9 5345442 to 5373034 27592 + protein coding gene caspase 12
Tssr83663 9 5345450 to 5345505 55 + TSS region transcription start site region 83663
Tssr88055 9 5440779 to 5440784 5 - TSS region transcription start site region 88055
Gm48506 9 5796779 to 5797033 254 + pseudogene predicted gene, 48506
Tssr2756 9 5857243 to 5857248 5 + TSS region transcription start site region 2756
Gm6015 9 5861647 to 5865418 3771 + pseudogene predicted gene 6015
Gm48640 9 5952442 to 5952667 225 - pseudogene predicted gene, 48640
Gm7425 9 6015245 to 6015935 690 + pseudogene predicted gene 7425
Gm9662 9 6070313 to 6074278 3965 + pseudogene predicted gene 9662
Cpgi21338 9 6168400 to 6168913 513 CpG island CpG island 21338
Tssr83664 9 6168449 to 6168460 11 + TSS region transcription start site region 83664
Tssr83665 9 6168470 to 6168488 18 + TSS region transcription start site region 83665
Tssr83666 9 6168553 to 6168567 14 + TSS region transcription start site region 83666
Tssr83667 9 6168570 to 6168595 25 + TSS region transcription start site region 83667
Pdgfd 9 6168584 to 6378850 210266 + protein coding gene platelet-derived growth factor, D polypeptide
Tssr83668 9 6168601 to 6168617 16 + TSS region transcription start site region 83668
Tssr83669 9 6168638 to 6168671 33 + TSS region transcription start site region 83669
Tssr2757 9 6168678 to 6168694 16 + TSS region transcription start site region 2757
Tssr83670 9 6193590 to 6193595 5 + TSS region transcription start site region 83670
Tssr83671 9 6238030 to 6238038 8 + TSS region transcription start site region 83671
D9Mit186 9 6256738 to 6256885 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 186
Ddi1 9 6265028 to 6266547 1519 - protein coding gene DNA-damage inducible 1
Tssr88056 9 6266544 to 6266553 9 - TSS region transcription start site region 88056
Tssr88057 9 6266562 to 6266590 28 - TSS region transcription start site region 88057
Gm7406 9 6354116 to 6356871 2755 unclassified gene predicted gene 7406
Gm21089 9 6594237 to 6594561 324 + pseudogene predicted gene, 21089
Gm48674 9 6665497 to 6665775 278 - pseudogene predicted gene, 48674
Gm23097 9 6706342 to 6706446 104 - snRNA gene predicted gene, 23097
Gm48675 9 6801843 to 6802419 576 + pseudogene predicted gene, 48675
8430439C15Rik 9 6911588 to 6912375 787 unclassified gene RIKEN cDNA 8430439C15 gene
Dync2h1 9 6928503 to 7177282 248779 - protein coding gene dynein cytoplasmic 2 heavy chain 1
Tssr2758 9 6953271 to 6953280 9 + TSS region transcription start site region 2758
Tssr88058 9 7015852 to 7015856 4 - TSS region transcription start site region 88058
Cpgi21339 9 7176624 to 7177199 575 CpG island CpG island 21339
Tssr88059 9 7176970 to 7176997 27 - TSS region transcription start site region 88059
Tssr88060 9 7177000 to 7177063 63 - TSS region transcription start site region 88060
Cpgi21340 9 7184229 to 7185303 1074 CpG island CpG island 21340
Dcun1d5 9 7184373 to 7207042 22669 + protein coding gene DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
Tssr88061 9 7184440 to 7184518 78 - TSS region transcription start site region 88061
Tssr83672 9 7184514 to 7184567 53 + TSS region transcription start site region 83672
Tssr88062 9 7221541 to 7221553 12 - TSS region transcription start site region 88062
Gm47741 9 7238154 to 7238379 225 - pseudogene predicted gene, 47741
Gm31639 9 7255494 to 7271508 16014 + lncRNA gene predicted gene, 31639
Mmp13 9 7272514 to 7283331 10817 + protein coding gene matrix metallopeptidase 13
Tssr83673 9 7272520 to 7272537 17 + TSS region transcription start site region 83673
Tssr83674 9 7277910 to 7277938 28 + TSS region transcription start site region 83674
Tssr83675 9 7277962 to 7277977 15 + TSS region transcription start site region 83675
Tssr83676 9 7280245 to 7280256 11 + TSS region transcription start site region 83676
Tssr83677 9 7280853 to 7280875 22 + TSS region transcription start site region 83677
Tssr83678 9 7282201 to 7282216 15 + TSS region transcription start site region 83678
Tssr83679 9 7282315 to 7282336 21 + TSS region transcription start site region 83679
Tssr83680 9 7282379 to 7282399 20 + TSS region transcription start site region 83680
Tssr88063 9 7332753 to 7332760 7 - TSS region transcription start site region 88063
Tssr83681 9 7344324 to 7344335 11 + TSS region transcription start site region 83681
Tssr83682 9 7344357 to 7344406 49 + TSS region transcription start site region 83682
Mmp12 9 7344397 to 7360461 16064 + protein coding gene matrix metallopeptidase 12
Tssr83683 9 7346108 to 7346154 46 + TSS region transcription start site region 83683
Tssr83684 9 7347404 to 7347410 6 + TSS region transcription start site region 83684
Tssr83685 9 7347464 to 7347473 9 + TSS region transcription start site region 83685
Tssr83686 9 7347497 to 7347522 25 + TSS region transcription start site region 83686
Tssr83687 9 7347531 to 7347540 9 + TSS region transcription start site region 83687
Tssr83688 9 7348203 to 7348237 34 + TSS region transcription start site region 83688
Tssr83689 9 7348568 to 7348591 23 + TSS region transcription start site region 83689
Tssr83690 9 7348604 to 7348618 14 + TSS region transcription start site region 83690
Tssr83691 9 7348623 to 7348647 24 + TSS region transcription start site region 83691
Tssr83692 9 7348654 to 7348670 16 + TSS region transcription start site region 83692
Tssr83693 9 7348690 to 7348702 12 + TSS region transcription start site region 83693
Tssr88064 9 7348690 to 7348729 39 - TSS region transcription start site region 88064
Tssr83694 9 7348716 to 7348731 15 + TSS region transcription start site region 83694
Tssr83695 9 7348788 to 7348813 25 + TSS region transcription start site region 83695
Tssr88065 9 7348791 to 7348820 29 - TSS region transcription start site region 88065
Tssr83696 9 7348843 to 7348876 33 + TSS region transcription start site region 83696
Tssr83697 9 7348902 to 7348917 15 + TSS region transcription start site region 83697
Tssr83698 9 7349057 to 7349094 37 + TSS region transcription start site region 83698
Tssr83699 9 7349107 to 7349118 11 + TSS region transcription start site region 83699
Tssr83700 9 7349155 to 7349179 24 + TSS region transcription start site region 83700
Tssr83701 9 7349200 to 7349227 27 + TSS region transcription start site region 83701
Tssr83702 9 7349237 to 7349249 12 + TSS region transcription start site region 83702
Tssr83703 9 7349720 to 7349731 11 + TSS region transcription start site region 83703
Tssr83704 9 7349752 to 7349765 13 + TSS region transcription start site region 83704
Tssr83705 9 7350006 to 7350027 21 + TSS region transcription start site region 83705
Tssr83706 9 7350030 to 7350054 24 + TSS region transcription start site region 83706
Tssr83707 9 7350065 to 7350076 11 + TSS region transcription start site region 83707
Tssr83708 9 7350086 to 7350094 8 + TSS region transcription start site region 83708
Tssr83709 9 7350106 to 7350117 11 + TSS region transcription start site region 83709
Tssr88066 9 7350112 to 7350123 11 - TSS region transcription start site region 88066
Tssr83710 9 7350616 to 7350634 18 + TSS region transcription start site region 83710
Tssr83711 9 7351103 to 7351116 13 + TSS region transcription start site region 83711
Tssr83712 9 7351973 to 7351985 12 + TSS region transcription start site region 83712
Tssr83713 9 7352375 to 7352386 11 + TSS region transcription start site region 83713
Tssr83714 9 7352547 to 7352570 23 + TSS region transcription start site region 83714
Tssr83715 9 7352599 to 7352614 15 + TSS region transcription start site region 83715
Tssr83716 9 7352870 to 7352907 37 + TSS region transcription start site region 83716
Tssr83717 9 7352911 to 7352918 7 + TSS region transcription start site region 83717
Tssr83718 9 7352931 to 7352952 21 + TSS region transcription start site region 83718
Tssr83719 9 7352957 to 7352985 28 + TSS region transcription start site region 83719
Tssr88067 9 7352980 to 7353013 33 - TSS region transcription start site region 88067
Tssr83720 9 7352986 to 7353018 32 + TSS region transcription start site region 83720
Tssr88068 9 7353028 to 7353059 31 - TSS region transcription start site region 88068
Tssr83721 9 7353238 to 7353249 11 + TSS region transcription start site region 83721
Tssr83722 9 7353440 to 7353530 90 + TSS region transcription start site region 83722
Tssr88069 9 7353475 to 7353505 30 - TSS region transcription start site region 88069
Tssr2759 9 7353543 to 7353546 3 + TSS region transcription start site region 2759
Tssr83723 9 7353564 to 7353577 13 + TSS region transcription start site region 83723
Tssr83724 9 7353885 to 7353896 11 + TSS region transcription start site region 83724
Tssr83725 9 7354009 to 7354033 24 + TSS region transcription start site region 83725
Tssr83726 9 7354098 to 7354128 30 + TSS region transcription start site region 83726
Tssr83727 9 7354710 to 7354798 88 + TSS region transcription start site region 83727
Tssr88070 9 7354751 to 7354778 27 - TSS region transcription start site region 88070
Tssr83728 9 7354802 to 7354823 21 + TSS region transcription start site region 83728
Tssr83729 9 7354824 to 7354832 8 + TSS region transcription start site region 83729
Tssr83730 9 7355304 to 7355314 10 + TSS region transcription start site region 83730
Tssr83731 9 7355318 to 7355358 40 + TSS region transcription start site region 83731
Tssr83732 9 7355359 to 7355391 32 + TSS region transcription start site region 83732
Tssr83733 9 7355396 to 7355439 43 + TSS region transcription start site region 83733
Tssr88071 9 7355415 to 7355426 11 - TSS region transcription start site region 88071
Tssr83734 9 7355824 to 7355835 11 + TSS region transcription start site region 83734
Tssr83735 9 7355846 to 7355857 11 + TSS region transcription start site region 83735
Tssr83736 9 7357801 to 7357860 59 + TSS region transcription start site region 83736
Tssr83737 9 7357864 to 7357884 20 + TSS region transcription start site region 83737
Tssr83738 9 7358212 to 7358375 163 + TSS region transcription start site region 83738
Tssr88072 9 7358261 to 7358283 22 - TSS region transcription start site region 88072
Tssr88073 9 7358333 to 7358363 30 - TSS region transcription start site region 88073
Tssr83739 9 7358378 to 7358409 31 + TSS region transcription start site region 83739
Tssr83740 9 7358441 to 7358460 19 + TSS region transcription start site region 83740
Tssr83741 9 7358515 to 7358526 11 + TSS region transcription start site region 83741
Tssr88074 9 7358680 to 7358685 5 - TSS region transcription start site region 88074
Mmp1b 9 7368239 to 7388047 19808 - protein coding gene matrix metallopeptidase 1b (interstitial collagenase)
Mmp3 9 7445822 to 7455975 10153 + protein coding gene matrix metallopeptidase 3
Tssr83742 9 7445837 to 7445855 18 + TSS region transcription start site region 83742
Tssr83743 9 7464139 to 7464145 6 + TSS region transcription start site region 83743
Mmp1a 9 7464141 to 7476869 12728 + polymorphic pseudogene matrix metallopeptidase 1a (interstitial collagenase)
Tssr83744 9 7502340 to 7502345 5 + TSS region transcription start site region 83744
Mmp10 9 7502352 to 7510240 7888 + protein coding gene matrix metallopeptidase 10
Tssr88075 9 7556270 to 7556278 8 - TSS region transcription start site region 88075
Tssr2760 9 7558239 to 7558246 7 - TSS region transcription start site region 2760
Tssr83745 9 7558448 to 7558465 17 + TSS region transcription start site region 83745
Mmp8 9 7558456 to 7568485 10029 + protein coding gene matrix metallopeptidase 8
Gm31751 9 7558535 to 7622658 64123 - lncRNA gene predicted gene, 31751