Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:45644550-46114648

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dscaml1 9 45427433 to 45753713 326280 + protein coding gene DS cell adhesion molecule like 1
Cpgi21693 9 45672580 to 45672937 357 CpG island CpG island 21693
Tssr84807 9 45742573 to 45742585 12 + TSS region transcription start site region 84807
Cep164 9 45766946 to 45828686 61740 - protein coding gene centrosomal protein 164
Cpgi21694 9 45767984 to 45768780 796 CpG island CpG island 21694
Tssr89265 9 45779609 to 45779636 27 - TSS region transcription start site region 89265
Tssr89266 9 45787651 to 45787666 15 - TSS region transcription start site region 89266
Tssr89267 9 45787673 to 45787720 47 - TSS region transcription start site region 89267
2610028D06Rik 9 45797348 to 45799060 1712 - unclassified gene RIKEN cDNA 2610028D06 gene
Tssr89268 9 45827281 to 45827309 28 - TSS region transcription start site region 89268
Cpgi21695 9 45828137 to 45828767 630 CpG island CpG island 21695
Tssr89269 9 45828590 to 45828604 14 - TSS region transcription start site region 89269
Tssr89270 9 45828618 to 45828680 62 - TSS region transcription start site region 89270
Tssr89271 9 45828709 to 45828720 11 - TSS region transcription start site region 89271
Gm7286 9 45835929 to 45836935 1006 - pseudogene predicted gene 7286
Bace1 9 45838545 to 45862484 23939 + protein coding gene beta-site APP cleaving enzyme 1
Tssr84808 9 45838572 to 45838592 20 + TSS region transcription start site region 84808
Cpgi21696 9 45838573 to 45839276 703 CpG island CpG island 21696
Tssr84809 9 45839881 to 45839896 15 + TSS region transcription start site region 84809
Tssr84810 9 45839942 to 45839954 12 + TSS region transcription start site region 84810
Tssr84811 9 45841112 to 45841121 9 + TSS region transcription start site region 84811
Tssr84812 9 45852704 to 45852718 14 + TSS region transcription start site region 84812
Tssr84813 9 45852740 to 45852756 16 + TSS region transcription start site region 84813
Gm16536 9 45856769 to 45858357 1588 - antisense lncRNA gene predicted gene 16536
Gm49338 9 45858604 to 45860682 2078 - unclassified gene predicted gene, 49338
Tssr84814 9 45858624 to 45858630 6 + TSS region transcription start site region 84814
Rnf214 9 45863425 to 45906911 43486 - protein coding gene ring finger protein 214
Tssr2848 9 45868890 to 45868895 5 + TSS region transcription start site region 2848
Gm24646 9 45879550 to 45879648 98 - snRNA gene predicted gene, 24646
Tssr89272 9 45900259 to 45900263 4 - TSS region transcription start site region 89272
Cpgi21697 9 45905701 to 45907374 1673 CpG island CpG island 21697
Tssr89273 9 45906369 to 45906437 68 - TSS region transcription start site region 89273
Pcsk7 9 45906497 to 45929726 23229 + protein coding gene proprotein convertase subtilisin/kexin type 7
Tssr84815 9 45906513 to 45906552 39 + TSS region transcription start site region 84815
Tssr89274 9 45906837 to 45906894 57 - TSS region transcription start site region 89274
Tssr89275 9 45906898 to 45906921 23 - TSS region transcription start site region 89275
Tssr84816 9 45906925 to 45907013 88 + TSS region transcription start site region 84816
Tssr89276 9 45907585 to 45907589 4 - TSS region transcription start site region 89276
Tagln 9 45929628 to 45936058 6430 - protein coding gene transgelin
Gm48529 9 45930112 to 45933738 3626 + antisense lncRNA gene predicted gene, 48529
Tssr84817 9 45930356 to 45930367 11 + TSS region transcription start site region 84817
Tssr89277 9 45930388 to 45930410 22 - TSS region transcription start site region 89277
Tssr89278 9 45930458 to 45930471 13 - TSS region transcription start site region 89278
Tssr89279 9 45935887 to 45935903 16 - TSS region transcription start site region 89279
Tssr89280 9 45936049 to 45936106 57 - TSS region transcription start site region 89280
Sidt2 9 45937857 to 45955249 17392 - protein coding gene SID1 transmembrane family, member 2
Mir7087 9 45939521 to 45939590 69 - miRNA gene microRNA 7087
Tssr2849 9 45944840 to 45944848 8 - TSS region transcription start site region 2849
Tssr2850 9 45944867 to 45944892 25 - TSS region transcription start site region 2850
Tssr89281 9 45945047 to 45945057 10 - TSS region transcription start site region 89281
Tssr89282 9 45945090 to 45945123 33 - TSS region transcription start site region 89282
Tssr89283 9 45945163 to 45945193 30 - TSS region transcription start site region 89283
Tssr84818 9 45945319 to 45945350 31 + TSS region transcription start site region 84818
Tssr89284 9 45945627 to 45945631 4 - TSS region transcription start site region 89284
Tssr2851 9 45945786 to 45945803 17 - TSS region transcription start site region 2851
Tssr89285 9 45945919 to 45945931 12 - TSS region transcription start site region 89285
Tssr89286 9 45945941 to 45945960 19 - TSS region transcription start site region 89286
Tssr89287 9 45945977 to 45945988 11 - TSS region transcription start site region 89287
Tssr89288 9 45946001 to 45946011 10 - TSS region transcription start site region 89288
Tssr89289 9 45946557 to 45946565 8 - TSS region transcription start site region 89289
Tssr89290 9 45946569 to 45946597 28 - TSS region transcription start site region 89290
Tssr89291 9 45946967 to 45946978 11 - TSS region transcription start site region 89291
Tssr89292 9 45952859 to 45952884 25 - TSS region transcription start site region 89292
Tssr89293 9 45953673 to 45953684 11 - TSS region transcription start site region 89293
A830035O19Rik 9 45954101 to 45955998 1897 + antisense lncRNA gene RIKEN cDNA A830035O19 gene
Cpgi21698 9 45954433 to 45955657 1224 CpG island CpG island 21698
Tssr89294 9 45954966 to 45954987 21 - TSS region transcription start site region 89294
Tssr89295 9 45955170 to 45955186 16 - TSS region transcription start site region 89295
Tssr89296 9 45955196 to 45955212 16 - TSS region transcription start site region 89296
Tssr89297 9 45955226 to 45955250 24 - TSS region transcription start site region 89297
Tssr89298 9 45955253 to 45955278 25 - TSS region transcription start site region 89298
Tssr89299 9 45955279 to 45955291 12 - TSS region transcription start site region 89299
Tssr84819 9 45955327 to 45955346 19 + TSS region transcription start site region 84819
D9Mit287 9 45956593 to 45956694 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 287
Pafah1b2 9 45965311 to 46012685 47374 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
Cpgi21699 9 45984161 to 45985164 1003 CpG island CpG island 21699
Tssr89300 9 45984377 to 45984381 4 - TSS region transcription start site region 89300
Tssr89301 9 45984519 to 45984524 5 - TSS region transcription start site region 89301
Tssr89302 9 45984528 to 45984561 33 - TSS region transcription start site region 89302
Tssr89303 9 45984562 to 45984586 24 - TSS region transcription start site region 89303
Tssr89304 9 45984777 to 45984808 31 - TSS region transcription start site region 89304
Tssr89305 9 45984816 to 45984855 39 - TSS region transcription start site region 89305
Tssr84820 9 45984925 to 45984943 18 + TSS region transcription start site region 84820
Tssr89306 9 45985365 to 45985415 50 - TSS region transcription start site region 89306
Tssr84821 9 46009261 to 46009269 8 + TSS region transcription start site region 84821
Tssr89307 9 46009780 to 46009782 2 - TSS region transcription start site region 89307
Cpgi21700 9 46012148 to 46013605 1457 CpG island CpG island 21700
Tssr89308 9 46012611 to 46012693 82 - TSS region transcription start site region 89308
Tssr84822 9 46012810 to 46012821 11 + TSS region transcription start site region 84822
Sik3 9 46012820 to 46224194 211374 + protein coding gene SIK family kinase 3
Tssr84823 9 46012822 to 46012860 38 + TSS region transcription start site region 84823
Tssr84824 9 46022446 to 46022457 11 + TSS region transcription start site region 84824
Tssr89309 9 46031227 to 46031228 1 - TSS region transcription start site region 89309
Tssr84825 9 46047966 to 46047970 4 + TSS region transcription start site region 84825
Tssr2852 9 46049815 to 46049829 14 + TSS region transcription start site region 2852
Tssr84826 9 46050112 to 46050116 4 + TSS region transcription start site region 84826
Tssr2853 9 46053416 to 46053427 11 + TSS region transcription start site region 2853
Gm46110 9 46054070 to 46072810 18740 - lncRNA gene predicted gene, 46110
Tssr84827 9 46083871 to 46083898 27 + TSS region transcription start site region 84827
Tssr89310 9 46112325 to 46112354 29 - TSS region transcription start site region 89310