Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:45152571-46042614

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
Scn4b 9 45139042 to 45154061 15019 + protein coding gene sodium channel, type IV, beta
Tssr84752 9 45152936 to 45152939 3 + TSS region transcription start site region 84752
Gm39327 9 45167053 to 45169180 2127 - lincRNA gene predicted gene, 39327
Tmprss4 9 45172726 to 45204092 31366 - protein coding gene transmembrane protease, serine 4
Gm17099 9 45172997 to 45175161 2164 + antisense lncRNA gene predicted gene 17099
Tssr84753 9 45189491 to 45189514 23 + TSS region transcription start site region 84753
Tssr84754 9 45189987 to 45189991 4 + TSS region transcription start site region 84754
BC049352 9 45195217 to 45251370 56153 + protein coding gene cDNA sequence BC049352
Tssr89246 9 45204024 to 45204048 24 - TSS region transcription start site region 89246
Tssr89247 9 45204067 to 45204077 10 - TSS region transcription start site region 89247
Tssr89248 9 45204083 to 45204106 23 - TSS region transcription start site region 89248
D9Mit68 9 45232548 to 45232683 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 68
Tssr89249 9 45245511 to 45245546 35 - TSS region transcription start site region 89249
Tssr84755 9 45245639 to 45245683 44 + TSS region transcription start site region 84755
Tssr89250 9 45246174 to 45246178 4 - TSS region transcription start site region 89250
Tssr84756 9 45246318 to 45246342 24 + TSS region transcription start site region 84756
Tssr84757 9 45246371 to 45246399 28 + TSS region transcription start site region 84757
Tssr89251 9 45249978 to 45250003 25 - TSS region transcription start site region 89251
Il10ra 9 45253837 to 45269149 15312 - protein coding gene interleukin 10 receptor, alpha
Cpgi21687 9 45256173 to 45257200 1027 CpG island CpG island 21687
Tssr89252 9 45259626 to 45259641 15 - TSS region transcription start site region 89252
Gm20612 9 45261055 to 45261290 235 + pseudogene predicted gene 20612
Tssr89253 9 45262889 to 45262939 50 - TSS region transcription start site region 89253
Tssr89254 9 45262956 to 45263008 52 - TSS region transcription start site region 89254
Tssr89255 9 45263046 to 45263068 22 - TSS region transcription start site region 89255
Tssr89256 9 45263070 to 45263099 29 - TSS region transcription start site region 89256
Tssr89257 9 45264176 to 45264190 14 - TSS region transcription start site region 89257
Tssr89258 9 45264217 to 45264234 17 - TSS region transcription start site region 89258
Tssr89259 9 45264240 to 45264251 11 - TSS region transcription start site region 89259
Tssr84758 9 45264882 to 45264895 13 + TSS region transcription start site region 84758
Mir7086 9 45266643 to 45266707 64 - miRNA gene microRNA 7086
Cpgi21688 9 45268791 to 45269322 531 CpG island CpG island 21688
Tssr89260 9 45268860 to 45268872 12 - TSS region transcription start site region 89260
Tssr89261 9 45269135 to 45269156 21 - TSS region transcription start site region 89261
Tssr89262 9 45272360 to 45272373 13 - TSS region transcription start site region 89262
Tssr84759 9 45274893 to 45274906 13 + TSS region transcription start site region 84759
Tssr84760 9 45281094 to 45281134 40 + TSS region transcription start site region 84760
Tssr2847 9 45293243 to 45293244 1 + TSS region transcription start site region 2847
Tssr84761 9 45299405 to 45299436 31 + TSS region transcription start site region 84761
Cpgi21689 9 45300515 to 45300851 336 CpG island CpG island 21689
Gm47964 9 45301962 to 45302171 209 + pseudogene predicted gene, 47964
D9Mit69 9 45308095 to 45308273 178 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 69
Lncbate3 9 45318266 to 45322079 3813 - antisense lncRNA gene brown adipose tissue enriched long noncoding RNA 3
Tssr84762 9 45318982 to 45319019 37 + TSS region transcription start site region 84762
Tssr84763 9 45319021 to 45319062 41 + TSS region transcription start site region 84763
Tssr84764 9 45319072 to 45319086 14 + TSS region transcription start site region 84764
Tmprss13 9 45319100 to 45347581 28481 + protein coding gene transmembrane protease, serine 13
Tssr84765 9 45328494 to 45328508 14 + TSS region transcription start site region 84765
Tssr84766 9 45346804 to 45346807 3 + TSS region transcription start site region 84766
Tssr84767 9 45370003 to 45370019 16 + TSS region transcription start site region 84767
Tssr84768 9 45370092 to 45370109 17 + TSS region transcription start site region 84768
Cpgi21690 9 45370118 to 45371077 959 CpG island CpG island 21690
Fxyd6 9 45370185 to 45396159 25974 + protein coding gene FXYD domain-containing ion transport regulator 6
Tssr84769 9 45370199 to 45370208 9 + TSS region transcription start site region 84769
Tssr84770 9 45370212 to 45370282 70 + TSS region transcription start site region 84770
Tssr84771 9 45370397 to 45370463 66 + TSS region transcription start site region 84771
Tssr84772 9 45371638 to 45371655 17 + TSS region transcription start site region 84772
Tssr84773 9 45371706 to 45371731 25 + TSS region transcription start site region 84773
Tssr84774 9 45379897 to 45379903 6 + TSS region transcription start site region 84774
Tssr84775 9 45389877 to 45389882 5 + TSS region transcription start site region 84775
Tssr84776 9 45389891 to 45389906 15 + TSS region transcription start site region 84776
Tssr84777 9 45389918 to 45389926 8 + TSS region transcription start site region 84777
Tssr84778 9 45390747 to 45390763 16 + TSS region transcription start site region 84778
Tssr84779 9 45390793 to 45390808 15 + TSS region transcription start site region 84779
Tssr84780 9 45395085 to 45395121 36 + TSS region transcription start site region 84780
Tssr84781 9 45399656 to 45399669 13 + TSS region transcription start site region 84781
Tssr84782 9 45399702 to 45399718 16 + TSS region transcription start site region 84782
Fxyd2 9 45399709 to 45410278 10569 + protein coding gene FXYD domain-containing ion transport regulator 2
Tssr84783 9 45402565 to 45402574 9 + TSS region transcription start site region 84783
Tssr84784 9 45402615 to 45402626 11 + TSS region transcription start site region 84784
Tssr84785 9 45403142 to 45403158 16 + TSS region transcription start site region 84785
Tssr84786 9 45403174 to 45403189 15 + TSS region transcription start site region 84786
Tssr84787 9 45403196 to 45403210 14 + TSS region transcription start site region 84787
Tssr84788 9 45403227 to 45403241 14 + TSS region transcription start site region 84788
Tssr84789 9 45403253 to 45403268 15 + TSS region transcription start site region 84789
Tssr84790 9 45405935 to 45406009 74 + TSS region transcription start site region 84790
Tssr84791 9 45406066 to 45406109 43 + TSS region transcription start site region 84791
Tssr84792 9 45406114 to 45406118 4 + TSS region transcription start site region 84792
Tssr84793 9 45407119 to 45407129 10 + TSS region transcription start site region 84793
Cpgi21691 9 45408136 to 45408350 214 CpG island CpG island 21691
Tssr84794 9 45408268 to 45408310 42 + TSS region transcription start site region 84794
Tssr84795 9 45409984 to 45410068 84 + TSS region transcription start site region 84795
Tssr84796 9 45410075 to 45410086 11 + TSS region transcription start site region 84796
Tssr89263 9 45410075 to 45410099 24 - TSS region transcription start site region 89263
Tssr84797 9 45410104 to 45410125 21 + TSS region transcription start site region 84797
Tssr84798 9 45410128 to 45410169 41 + TSS region transcription start site region 84798
Gm48135 9 45413473 to 45414090 617 - unclassified gene predicted gene, 48135
4833428L15Rik 9 45416626 to 45431232 14606 - antisense lncRNA gene RIKEN cDNA 4833428L15 gene
Tssr84799 9 45426630 to 45426648 18 + TSS region transcription start site region 84799
Dscaml1 9 45427433 to 45753713 326280 + protein coding gene DS cell adhesion molecule like 1
Cpgi21692 9 45430000 to 45431642 1642 CpG island CpG island 21692
Tssr84800 9 45430316 to 45430379 63 + TSS region transcription start site region 84800
Tssr84801 9 45431329 to 45431339 10 + TSS region transcription start site region 84801
Tssr84802 9 45431357 to 45431366 9 + TSS region transcription start site region 84802
Tssr84803 9 45476336 to 45476341 5 + TSS region transcription start site region 84803
Tssr84804 9 45500344 to 45500356 12 + TSS region transcription start site region 84804
Tssr89264 9 45545417 to 45545418 1 - TSS region transcription start site region 89264
Tssr84805 9 45595679 to 45595725 46 + TSS region transcription start site region 84805
Tssr84806 9 45597571 to 45597614 43 + TSS region transcription start site region 84806
D9Mit192 9 45619151 to 45619287 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 192
Gm22069 9 45634706 to 45634812 106 - snRNA gene predicted gene, 22069
Cpgi21693 9 45672580 to 45672937 357 CpG island CpG island 21693
Tssr84807 9 45742573 to 45742585 12 + TSS region transcription start site region 84807
Cep164 9 45766946 to 45828686 61740 - protein coding gene centrosomal protein 164
Cpgi21694 9 45767984 to 45768780 796 CpG island CpG island 21694
Tssr89265 9 45779609 to 45779636 27 - TSS region transcription start site region 89265
Tssr89266 9 45787651 to 45787666 15 - TSS region transcription start site region 89266
Tssr89267 9 45787673 to 45787720 47 - TSS region transcription start site region 89267
2610028D06Rik 9 45797348 to 45799060 1712 - unclassified gene RIKEN cDNA 2610028D06 gene
Tssr89268 9 45827281 to 45827309 28 - TSS region transcription start site region 89268
Cpgi21695 9 45828137 to 45828767 630 CpG island CpG island 21695
Tssr89269 9 45828590 to 45828604 14 - TSS region transcription start site region 89269
Tssr89270 9 45828618 to 45828680 62 - TSS region transcription start site region 89270
Tssr89271 9 45828709 to 45828720 11 - TSS region transcription start site region 89271
Gm7286 9 45835929 to 45836935 1006 - pseudogene predicted gene 7286
Bace1 9 45838545 to 45862484 23939 + protein coding gene beta-site APP cleaving enzyme 1
Tssr84808 9 45838572 to 45838592 20 + TSS region transcription start site region 84808
Cpgi21696 9 45838573 to 45839276 703 CpG island CpG island 21696
Tssr84809 9 45839881 to 45839896 15 + TSS region transcription start site region 84809
Tssr84810 9 45839942 to 45839954 12 + TSS region transcription start site region 84810
Tssr84811 9 45841112 to 45841121 9 + TSS region transcription start site region 84811
Tssr84812 9 45852704 to 45852718 14 + TSS region transcription start site region 84812
Tssr84813 9 45852740 to 45852756 16 + TSS region transcription start site region 84813
Gm16536 9 45856769 to 45858357 1588 - antisense lncRNA gene predicted gene 16536
Gm49338 9 45858604 to 45860682 2078 - unclassified gene predicted gene, 49338
Tssr84814 9 45858624 to 45858630 6 + TSS region transcription start site region 84814
Rnf214 9 45863425 to 45906911 43486 - protein coding gene ring finger protein 214
Tssr2848 9 45868890 to 45868895 5 + TSS region transcription start site region 2848
Gm24646 9 45879550 to 45879648 98 - snRNA gene predicted gene, 24646
Tssr89272 9 45900259 to 45900263 4 - TSS region transcription start site region 89272
Cpgi21697 9 45905701 to 45907374 1673 CpG island CpG island 21697
Tssr89273 9 45906369 to 45906437 68 - TSS region transcription start site region 89273
Pcsk7 9 45906497 to 45929726 23229 + protein coding gene proprotein convertase subtilisin/kexin type 7
Tssr84815 9 45906513 to 45906552 39 + TSS region transcription start site region 84815
Tssr89274 9 45906837 to 45906894 57 - TSS region transcription start site region 89274
Tssr89275 9 45906898 to 45906921 23 - TSS region transcription start site region 89275
Tssr84816 9 45906925 to 45907013 88 + TSS region transcription start site region 84816
Tssr89276 9 45907585 to 45907589 4 - TSS region transcription start site region 89276
Tagln 9 45929628 to 45936058 6430 - protein coding gene transgelin
Gm48529 9 45930112 to 45933738 3626 + antisense lncRNA gene predicted gene, 48529
Tssr84817 9 45930356 to 45930367 11 + TSS region transcription start site region 84817
Tssr89277 9 45930388 to 45930410 22 - TSS region transcription start site region 89277
Tssr89278 9 45930458 to 45930471 13 - TSS region transcription start site region 89278
Tssr89279 9 45935887 to 45935903 16 - TSS region transcription start site region 89279
Tssr89280 9 45936049 to 45936106 57 - TSS region transcription start site region 89280
Sidt2 9 45937857 to 45955249 17392 - protein coding gene SID1 transmembrane family, member 2
Mir7087 9 45939521 to 45939590 69 - miRNA gene microRNA 7087
Tssr2849 9 45944840 to 45944848 8 - TSS region transcription start site region 2849
Tssr2850 9 45944867 to 45944892 25 - TSS region transcription start site region 2850
Tssr89281 9 45945047 to 45945057 10 - TSS region transcription start site region 89281
Tssr89282 9 45945090 to 45945123 33 - TSS region transcription start site region 89282
Tssr89283 9 45945163 to 45945193 30 - TSS region transcription start site region 89283
Tssr84818 9 45945319 to 45945350 31 + TSS region transcription start site region 84818
Tssr89284 9 45945627 to 45945631 4 - TSS region transcription start site region 89284
Tssr2851 9 45945786 to 45945803 17 - TSS region transcription start site region 2851
Tssr89285 9 45945919 to 45945931 12 - TSS region transcription start site region 89285
Tssr89286 9 45945941 to 45945960 19 - TSS region transcription start site region 89286
Tssr89287 9 45945977 to 45945988 11 - TSS region transcription start site region 89287
Tssr89288 9 45946001 to 45946011 10 - TSS region transcription start site region 89288
Tssr89289 9 45946557 to 45946565 8 - TSS region transcription start site region 89289
Tssr89290 9 45946569 to 45946597 28 - TSS region transcription start site region 89290
Tssr89291 9 45946967 to 45946978 11 - TSS region transcription start site region 89291
Tssr89292 9 45952859 to 45952884 25 - TSS region transcription start site region 89292
Tssr89293 9 45953673 to 45953684 11 - TSS region transcription start site region 89293
A830035O19Rik 9 45954101 to 45955998 1897 + antisense lncRNA gene RIKEN cDNA A830035O19 gene
Cpgi21698 9 45954433 to 45955657 1224 CpG island CpG island 21698
Tssr89294 9 45954966 to 45954987 21 - TSS region transcription start site region 89294
Tssr89295 9 45955170 to 45955186 16 - TSS region transcription start site region 89295
Tssr89296 9 45955196 to 45955212 16 - TSS region transcription start site region 89296
Tssr89297 9 45955226 to 45955250 24 - TSS region transcription start site region 89297
Tssr89298 9 45955253 to 45955278 25 - TSS region transcription start site region 89298
Tssr89299 9 45955279 to 45955291 12 - TSS region transcription start site region 89299
Tssr84819 9 45955327 to 45955346 19 + TSS region transcription start site region 84819
D9Mit287 9 45956593 to 45956694 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 287
Pafah1b2 9 45965311 to 46012685 47374 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
Cpgi21699 9 45984161 to 45985164 1003 CpG island CpG island 21699
Tssr89300 9 45984377 to 45984381 4 - TSS region transcription start site region 89300
Tssr89301 9 45984519 to 45984524 5 - TSS region transcription start site region 89301
Tssr89302 9 45984528 to 45984561 33 - TSS region transcription start site region 89302
Tssr89303 9 45984562 to 45984586 24 - TSS region transcription start site region 89303
Tssr89304 9 45984777 to 45984808 31 - TSS region transcription start site region 89304
Tssr89305 9 45984816 to 45984855 39 - TSS region transcription start site region 89305
Tssr84820 9 45984925 to 45984943 18 + TSS region transcription start site region 84820
Tssr89306 9 45985365 to 45985415 50 - TSS region transcription start site region 89306
Tssr84821 9 46009261 to 46009269 8 + TSS region transcription start site region 84821
Tssr89307 9 46009780 to 46009782 2 - TSS region transcription start site region 89307
Cpgi21700 9 46012148 to 46013605 1457 CpG island CpG island 21700
Tssr89308 9 46012611 to 46012693 82 - TSS region transcription start site region 89308
Tssr84822 9 46012810 to 46012821 11 + TSS region transcription start site region 84822
Sik3 9 46012820 to 46224194 211374 + protein coding gene SIK family kinase 3
Tssr84823 9 46012822 to 46012860 38 + TSS region transcription start site region 84823
Tssr84824 9 46022446 to 46022457 11 + TSS region transcription start site region 84824
Tssr89309 9 46031227 to 46031228 1 - TSS region transcription start site region 89309