Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:45108253-45698268

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
Jaml 9 45079183 to 45108534 29351 + protein coding gene junction adhesion molecule like
Gm10684 9 45107176 to 45135606 28430 - lincRNA gene predicted gene 10684
Gm47596 9 45112022 to 45112855 833 - unclassified gene predicted gene, 47596
Tssr84729 9 45117813 to 45117876 63 + TSS region transcription start site region 84729
Scn2b 9 45117876 to 45130070 12194 + protein coding gene sodium channel, voltage-gated, type II, beta
Tssr84730 9 45117886 to 45117897 11 + TSS region transcription start site region 84730
Tssr84731 9 45121165 to 45121177 12 + TSS region transcription start site region 84731
Tssr84732 9 45121197 to 45121213 16 + TSS region transcription start site region 84732
Tssr84733 9 45122436 to 45122467 31 + TSS region transcription start site region 84733
Cpgi21685 9 45137949 to 45139281 1332 CpG island CpG island 21685
Tssr84734 9 45138296 to 45138305 9 + TSS region transcription start site region 84734
Tssr84735 9 45138314 to 45138321 7 + TSS region transcription start site region 84735
Tssr84736 9 45138390 to 45138403 13 + TSS region transcription start site region 84736
Tssr84737 9 45138457 to 45138462 5 + TSS region transcription start site region 84737
Tssr84738 9 45138528 to 45138537 9 + TSS region transcription start site region 84738
Tssr84739 9 45138540 to 45138549 9 + TSS region transcription start site region 84739
Tssr84740 9 45138550 to 45138561 11 + TSS region transcription start site region 84740
Tssr84741 9 45138576 to 45138594 18 + TSS region transcription start site region 84741
Tssr84742 9 45138600 to 45138613 13 + TSS region transcription start site region 84742
Tssr84743 9 45138616 to 45138631 15 + TSS region transcription start site region 84743
Tssr84744 9 45138747 to 45138758 11 + TSS region transcription start site region 84744
Tssr84745 9 45138762 to 45138769 7 + TSS region transcription start site region 84745
Tssr84746 9 45138791 to 45138798 7 + TSS region transcription start site region 84746
Tssr84747 9 45138800 to 45138840 40 + TSS region transcription start site region 84747
Tssr84748 9 45138864 to 45138880 16 + TSS region transcription start site region 84748
Tssr84749 9 45138882 to 45138898 16 + TSS region transcription start site region 84749
Tssr84750 9 45138899 to 45138918 19 + TSS region transcription start site region 84750
Tssr84751 9 45138929 to 45138939 10 + TSS region transcription start site region 84751
Scn4b 9 45139042 to 45154061 15019 + protein coding gene sodium channel, type IV, beta
Cpgi21686 9 45145686 to 45146181 495 CpG island CpG island 21686
Tssr84752 9 45152936 to 45152939 3 + TSS region transcription start site region 84752
Gm39327 9 45167053 to 45169180 2127 - lincRNA gene predicted gene, 39327
Tmprss4 9 45172726 to 45204092 31366 - protein coding gene transmembrane protease, serine 4
Gm17099 9 45172997 to 45175161 2164 + antisense lncRNA gene predicted gene 17099
Tssr84753 9 45189491 to 45189514 23 + TSS region transcription start site region 84753
Tssr84754 9 45189987 to 45189991 4 + TSS region transcription start site region 84754
BC049352 9 45195217 to 45251370 56153 + protein coding gene cDNA sequence BC049352
Tssr89246 9 45204024 to 45204048 24 - TSS region transcription start site region 89246
Tssr89247 9 45204067 to 45204077 10 - TSS region transcription start site region 89247
Tssr89248 9 45204083 to 45204106 23 - TSS region transcription start site region 89248
D9Mit68 9 45232548 to 45232683 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 68
Tssr89249 9 45245511 to 45245546 35 - TSS region transcription start site region 89249
Tssr84755 9 45245639 to 45245683 44 + TSS region transcription start site region 84755
Tssr89250 9 45246174 to 45246178 4 - TSS region transcription start site region 89250
Tssr84756 9 45246318 to 45246342 24 + TSS region transcription start site region 84756
Tssr84757 9 45246371 to 45246399 28 + TSS region transcription start site region 84757
Tssr89251 9 45249978 to 45250003 25 - TSS region transcription start site region 89251
Il10ra 9 45253837 to 45269149 15312 - protein coding gene interleukin 10 receptor, alpha
Cpgi21687 9 45256173 to 45257200 1027 CpG island CpG island 21687
Tssr89252 9 45259626 to 45259641 15 - TSS region transcription start site region 89252
Gm20612 9 45261055 to 45261290 235 + pseudogene predicted gene 20612
Tssr89253 9 45262889 to 45262939 50 - TSS region transcription start site region 89253
Tssr89254 9 45262956 to 45263008 52 - TSS region transcription start site region 89254
Tssr89255 9 45263046 to 45263068 22 - TSS region transcription start site region 89255
Tssr89256 9 45263070 to 45263099 29 - TSS region transcription start site region 89256
Tssr89257 9 45264176 to 45264190 14 - TSS region transcription start site region 89257
Tssr89258 9 45264217 to 45264234 17 - TSS region transcription start site region 89258
Tssr89259 9 45264240 to 45264251 11 - TSS region transcription start site region 89259
Tssr84758 9 45264882 to 45264895 13 + TSS region transcription start site region 84758
Mir7086 9 45266643 to 45266707 64 - miRNA gene microRNA 7086
Cpgi21688 9 45268791 to 45269322 531 CpG island CpG island 21688
Tssr89260 9 45268860 to 45268872 12 - TSS region transcription start site region 89260
Tssr89261 9 45269135 to 45269156 21 - TSS region transcription start site region 89261
Tssr89262 9 45272360 to 45272373 13 - TSS region transcription start site region 89262
Tssr84759 9 45274893 to 45274906 13 + TSS region transcription start site region 84759
Tssr84760 9 45281094 to 45281134 40 + TSS region transcription start site region 84760
Tssr2847 9 45293243 to 45293244 1 + TSS region transcription start site region 2847
Tssr84761 9 45299405 to 45299436 31 + TSS region transcription start site region 84761
Cpgi21689 9 45300515 to 45300851 336 CpG island CpG island 21689
Gm47964 9 45301962 to 45302171 209 + pseudogene predicted gene, 47964
D9Mit69 9 45308095 to 45308273 178 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 69
Lncbate3 9 45318266 to 45322079 3813 - antisense lncRNA gene brown adipose tissue enriched long noncoding RNA 3
Tssr84762 9 45318982 to 45319019 37 + TSS region transcription start site region 84762
Tssr84763 9 45319021 to 45319062 41 + TSS region transcription start site region 84763
Tssr84764 9 45319072 to 45319086 14 + TSS region transcription start site region 84764
Tmprss13 9 45319100 to 45347581 28481 + protein coding gene transmembrane protease, serine 13
Tssr84765 9 45328494 to 45328508 14 + TSS region transcription start site region 84765
Tssr84766 9 45346804 to 45346807 3 + TSS region transcription start site region 84766
Tssr84767 9 45370003 to 45370019 16 + TSS region transcription start site region 84767
Tssr84768 9 45370092 to 45370109 17 + TSS region transcription start site region 84768
Cpgi21690 9 45370118 to 45371077 959 CpG island CpG island 21690
Fxyd6 9 45370185 to 45396159 25974 + protein coding gene FXYD domain-containing ion transport regulator 6
Tssr84769 9 45370199 to 45370208 9 + TSS region transcription start site region 84769
Tssr84770 9 45370212 to 45370282 70 + TSS region transcription start site region 84770
Tssr84771 9 45370397 to 45370463 66 + TSS region transcription start site region 84771
Tssr84772 9 45371638 to 45371655 17 + TSS region transcription start site region 84772
Tssr84773 9 45371706 to 45371731 25 + TSS region transcription start site region 84773
Tssr84774 9 45379897 to 45379903 6 + TSS region transcription start site region 84774
Tssr84775 9 45389877 to 45389882 5 + TSS region transcription start site region 84775
Tssr84776 9 45389891 to 45389906 15 + TSS region transcription start site region 84776
Tssr84777 9 45389918 to 45389926 8 + TSS region transcription start site region 84777
Tssr84778 9 45390747 to 45390763 16 + TSS region transcription start site region 84778
Tssr84779 9 45390793 to 45390808 15 + TSS region transcription start site region 84779
Tssr84780 9 45395085 to 45395121 36 + TSS region transcription start site region 84780
Tssr84781 9 45399656 to 45399669 13 + TSS region transcription start site region 84781
Tssr84782 9 45399702 to 45399718 16 + TSS region transcription start site region 84782
Fxyd2 9 45399709 to 45410278 10569 + protein coding gene FXYD domain-containing ion transport regulator 2
Tssr84783 9 45402565 to 45402574 9 + TSS region transcription start site region 84783
Tssr84784 9 45402615 to 45402626 11 + TSS region transcription start site region 84784
Tssr84785 9 45403142 to 45403158 16 + TSS region transcription start site region 84785
Tssr84786 9 45403174 to 45403189 15 + TSS region transcription start site region 84786
Tssr84787 9 45403196 to 45403210 14 + TSS region transcription start site region 84787
Tssr84788 9 45403227 to 45403241 14 + TSS region transcription start site region 84788
Tssr84789 9 45403253 to 45403268 15 + TSS region transcription start site region 84789
Tssr84790 9 45405935 to 45406009 74 + TSS region transcription start site region 84790
Tssr84791 9 45406066 to 45406109 43 + TSS region transcription start site region 84791
Tssr84792 9 45406114 to 45406118 4 + TSS region transcription start site region 84792
Tssr84793 9 45407119 to 45407129 10 + TSS region transcription start site region 84793
Cpgi21691 9 45408136 to 45408350 214 CpG island CpG island 21691
Tssr84794 9 45408268 to 45408310 42 + TSS region transcription start site region 84794
Tssr84795 9 45409984 to 45410068 84 + TSS region transcription start site region 84795
Tssr84796 9 45410075 to 45410086 11 + TSS region transcription start site region 84796
Tssr89263 9 45410075 to 45410099 24 - TSS region transcription start site region 89263
Tssr84797 9 45410104 to 45410125 21 + TSS region transcription start site region 84797
Tssr84798 9 45410128 to 45410169 41 + TSS region transcription start site region 84798
Gm48135 9 45413473 to 45414090 617 - unclassified gene predicted gene, 48135
4833428L15Rik 9 45416626 to 45431232 14606 - antisense lncRNA gene RIKEN cDNA 4833428L15 gene
Tssr84799 9 45426630 to 45426648 18 + TSS region transcription start site region 84799
Dscaml1 9 45427433 to 45753713 326280 + protein coding gene DS cell adhesion molecule like 1
Cpgi21692 9 45430000 to 45431642 1642 CpG island CpG island 21692
Tssr84800 9 45430316 to 45430379 63 + TSS region transcription start site region 84800
Tssr84801 9 45431329 to 45431339 10 + TSS region transcription start site region 84801
Tssr84802 9 45431357 to 45431366 9 + TSS region transcription start site region 84802
Tssr84803 9 45476336 to 45476341 5 + TSS region transcription start site region 84803
Tssr84804 9 45500344 to 45500356 12 + TSS region transcription start site region 84804
Tssr89264 9 45545417 to 45545418 1 - TSS region transcription start site region 89264
Tssr84805 9 45595679 to 45595725 46 + TSS region transcription start site region 84805
Tssr84806 9 45597571 to 45597614 43 + TSS region transcription start site region 84806
D9Mit192 9 45619151 to 45619287 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 192
Gm22069 9 45634706 to 45634812 106 - snRNA gene predicted gene, 22069
Cpgi21693 9 45672580 to 45672937 357 CpG island CpG island 21693