Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:45007176-45235606

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cd3e 9 44998740 to 45009627 10887 - protein coding gene CD3 antigen, epsilon polypeptide
Gm48720 9 45008142 to 45009347 1205 - unclassified gene predicted gene, 48720
Tssr89238 9 45009263 to 45009271 8 - TSS region transcription start site region 89238
Tssr89239 9 45009599 to 45009645 46 - TSS region transcription start site region 89239
Tssr89240 9 45009808 to 45009826 18 - TSS region transcription start site region 89240
Tssr89241 9 45009834 to 45009847 13 - TSS region transcription start site region 89241
Tssr89242 9 45009863 to 45009876 13 - TSS region transcription start site region 89242
Tssr89243 9 45011445 to 45011454 9 - TSS region transcription start site region 89243
Tssr84712 9 45039746 to 45039757 11 + TSS region transcription start site region 84712
Tssr84713 9 45039777 to 45039792 15 + TSS region transcription start site region 84713
Mpzl2 9 45040275 to 45054043 13768 + protein coding gene myelin protein zero-like 2
Tssr84714 9 45040419 to 45040451 32 + TSS region transcription start site region 84714
Cpgi21681 9 45042416 to 45042917 501 CpG island CpG island 21681
Tssr84715 9 45042535 to 45042551 16 + TSS region transcription start site region 84715
Tssr84716 9 45042565 to 45042623 58 + TSS region transcription start site region 84716
Tssr84717 9 45042627 to 45042660 33 + TSS region transcription start site region 84717
Tssr84718 9 45042663 to 45042669 6 + TSS region transcription start site region 84718
Cpgi21682 9 45044175 to 45044392 217 CpG island CpG island 21682
Cpgi21683 9 45047103 to 45047330 227 CpG island CpG island 21683
Gm48840 9 45051424 to 45055344 3920 - unclassified gene predicted gene, 48840
Cpgi21684 9 45055031 to 45055613 582 CpG island CpG island 21684
Tssr84719 9 45055166 to 45055195 29 + TSS region transcription start site region 84719
Mpzl3 9 45055181 to 45075042 19861 + protein coding gene myelin protein zero-like 3
Tssr84720 9 45055211 to 45055225 14 + TSS region transcription start site region 84720
Tssr84721 9 45055228 to 45055243 15 + TSS region transcription start site region 84721
Tssr89244 9 45055318 to 45055349 31 - TSS region transcription start site region 89244
Tssr89245 9 45064459 to 45064495 36 - TSS region transcription start site region 89245
Tssr84722 9 45079170 to 45079203 33 + TSS region transcription start site region 84722
Jaml 9 45079183 to 45108534 29351 + protein coding gene junction adhesion molecule like
Tssr84723 9 45079204 to 45079236 32 + TSS region transcription start site region 84723
Tssr84724 9 45086630 to 45086649 19 + TSS region transcription start site region 84724
Tssr84725 9 45102874 to 45102884 10 + TSS region transcription start site region 84725
Tssr84726 9 45103836 to 45103862 26 + TSS region transcription start site region 84726
Tssr84727 9 45103866 to 45103893 27 + TSS region transcription start site region 84727
Tssr84728 9 45103894 to 45103920 26 + TSS region transcription start site region 84728
Gm10684 9 45107176 to 45135606 28430 - lincRNA gene predicted gene 10684
Gm47596 9 45112022 to 45112855 833 - unclassified gene predicted gene, 47596
Tssr84729 9 45117813 to 45117876 63 + TSS region transcription start site region 84729
Scn2b 9 45117876 to 45130070 12194 + protein coding gene sodium channel, voltage-gated, type II, beta
Tssr84730 9 45117886 to 45117897 11 + TSS region transcription start site region 84730
Tssr84731 9 45121165 to 45121177 12 + TSS region transcription start site region 84731
Tssr84732 9 45121197 to 45121213 16 + TSS region transcription start site region 84732
Tssr84733 9 45122436 to 45122467 31 + TSS region transcription start site region 84733
Cpgi21685 9 45137949 to 45139281 1332 CpG island CpG island 21685
Tssr84734 9 45138296 to 45138305 9 + TSS region transcription start site region 84734
Tssr84735 9 45138314 to 45138321 7 + TSS region transcription start site region 84735
Tssr84736 9 45138390 to 45138403 13 + TSS region transcription start site region 84736
Tssr84737 9 45138457 to 45138462 5 + TSS region transcription start site region 84737
Tssr84738 9 45138528 to 45138537 9 + TSS region transcription start site region 84738
Tssr84739 9 45138540 to 45138549 9 + TSS region transcription start site region 84739
Tssr84740 9 45138550 to 45138561 11 + TSS region transcription start site region 84740
Tssr84741 9 45138576 to 45138594 18 + TSS region transcription start site region 84741
Tssr84742 9 45138600 to 45138613 13 + TSS region transcription start site region 84742
Tssr84743 9 45138616 to 45138631 15 + TSS region transcription start site region 84743
Tssr84744 9 45138747 to 45138758 11 + TSS region transcription start site region 84744
Tssr84745 9 45138762 to 45138769 7 + TSS region transcription start site region 84745
Tssr84746 9 45138791 to 45138798 7 + TSS region transcription start site region 84746
Tssr84747 9 45138800 to 45138840 40 + TSS region transcription start site region 84747
Tssr84748 9 45138864 to 45138880 16 + TSS region transcription start site region 84748
Tssr84749 9 45138882 to 45138898 16 + TSS region transcription start site region 84749
Tssr84750 9 45138899 to 45138918 19 + TSS region transcription start site region 84750
Tssr84751 9 45138929 to 45138939 10 + TSS region transcription start site region 84751
Scn4b 9 45139042 to 45154061 15019 + protein coding gene sodium channel, type IV, beta
Cpgi21686 9 45145686 to 45146181 495 CpG island CpG island 21686
Tssr84752 9 45152936 to 45152939 3 + TSS region transcription start site region 84752
Gm39327 9 45167053 to 45169180 2127 - lincRNA gene predicted gene, 39327
Tmprss4 9 45172726 to 45204092 31366 - protein coding gene transmembrane protease, serine 4
Gm17099 9 45172997 to 45175161 2164 + antisense lncRNA gene predicted gene 17099
Tssr84753 9 45189491 to 45189514 23 + TSS region transcription start site region 84753
Tssr84754 9 45189987 to 45189991 4 + TSS region transcription start site region 84754
BC049352 9 45195217 to 45251370 56153 + protein coding gene cDNA sequence BC049352
Tssr89246 9 45204024 to 45204048 24 - TSS region transcription start site region 89246
Tssr89247 9 45204067 to 45204077 10 - TSS region transcription start site region 89247
Tssr89248 9 45204083 to 45204106 23 - TSS region transcription start site region 89248
D9Mit68 9 45232548 to 45232683 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 68