Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44963939-45033950

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ube4a 9 44923127 to 44965600 42473 - protein coding gene ubiquitination factor E4A
Cpgi21679 9 44965244 to 44965770 526 CpG island CpG island 21679
Tssr89215 9 44965519 to 44965586 67 - TSS region transcription start site region 89215
Cd3g 9 44969572 to 44980431 10859 - protein coding gene CD3 antigen, gamma polypeptide
Tssr89216 9 44969771 to 44969774 3 - TSS region transcription start site region 89216
Tssr89217 9 44974239 to 44974250 11 - TSS region transcription start site region 89217
Tssr89218 9 44974345 to 44974359 14 - TSS region transcription start site region 89218
D9Mit255a 9 44979756 to 44979850 94 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 255a
D9Mit255b 9 44979796 to 44979850 54 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 255b
Tssr89219 9 44980330 to 44980341 11 - TSS region transcription start site region 89219
Tssr89220 9 44980342 to 44980369 27 - TSS region transcription start site region 89220
Tssr89221 9 44980390 to 44980437 47 - TSS region transcription start site region 89221
Tssr89222 9 44980439 to 44980455 16 - TSS region transcription start site region 89222
Tssr84704 9 44980536 to 44980558 22 + TSS region transcription start site region 84704
Cd3d 9 44981769 to 44987052 5283 + protein coding gene CD3 antigen, delta polypeptide
Tssr84705 9 44981779 to 44981798 19 + TSS region transcription start site region 84705
Tssr84706 9 44981801 to 44981834 33 + TSS region transcription start site region 84706
Tssr84707 9 44981847 to 44981864 17 + TSS region transcription start site region 84707
Tssr84708 9 44983659 to 44983663 4 + TSS region transcription start site region 84708
Tssr84709 9 44985435 to 44985454 19 + TSS region transcription start site region 84709
Tssr89223 9 44986530 to 44986548 18 - TSS region transcription start site region 89223
D9Mit23 9 44986720 to 44986926 206 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 23
Tssr89224 9 44987166 to 44987180 14 - TSS region transcription start site region 89224
Tssr89225 9 44987185 to 44987200 15 - TSS region transcription start site region 89225
Cpgi21680 9 44998226 to 44998488 262 CpG island CpG island 21680
Cd3e 9 44998740 to 45009627 10887 - protein coding gene CD3 antigen, epsilon polypeptide
Tssr89226 9 44998939 to 44998950 11 - TSS region transcription start site region 89226
Tssr89227 9 44998985 to 44999016 31 - TSS region transcription start site region 89227
Tssr89228 9 44999121 to 44999149 28 - TSS region transcription start site region 89228
Tssr89229 9 44999178 to 44999209 31 - TSS region transcription start site region 89229
Tssr89230 9 44999221 to 44999257 36 - TSS region transcription start site region 89230
Tssr89231 9 44999258 to 44999282 24 - TSS region transcription start site region 89231
Tssr89232 9 44999283 to 44999298 15 - TSS region transcription start site region 89232
Tssr89233 9 44999351 to 44999362 11 - TSS region transcription start site region 89233
Gm48719 9 44999429 to 45002985 3556 + antisense lncRNA gene predicted gene, 48719
Tssr84710 9 44999444 to 44999461 17 + TSS region transcription start site region 84710
Tssr89234 9 45001014 to 45001034 20 - TSS region transcription start site region 89234
Tssr89235 9 45001046 to 45001079 33 - TSS region transcription start site region 89235
Tssr89236 9 45001102 to 45001132 30 - TSS region transcription start site region 89236
Tssr84711 9 45002275 to 45002293 18 + TSS region transcription start site region 84711
Tssr89237 9 45002614 to 45002627 13 - TSS region transcription start site region 89237
Gm48720 9 45008142 to 45009347 1205 - unclassified gene predicted gene, 48720
Tssr89238 9 45009263 to 45009271 8 - TSS region transcription start site region 89238
Tssr89239 9 45009599 to 45009645 46 - TSS region transcription start site region 89239
Tssr89240 9 45009808 to 45009826 18 - TSS region transcription start site region 89240
Tssr89241 9 45009834 to 45009847 13 - TSS region transcription start site region 89241
Tssr89242 9 45009863 to 45009876 13 - TSS region transcription start site region 89242
Tssr89243 9 45011445 to 45011454 9 - TSS region transcription start site region 89243