Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44947936-45357939

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ube4a 9 44923127 to 44965600 42473 - protein coding gene ubiquitination factor E4A
Gm19121 9 44955715 to 44956736 1021 + pseudogene predicted gene, 19121
Cpgi21679 9 44965244 to 44965770 526 CpG island CpG island 21679
Tssr89215 9 44965519 to 44965586 67 - TSS region transcription start site region 89215
Cd3g 9 44969572 to 44980431 10859 - protein coding gene CD3 antigen, gamma polypeptide
Tssr89216 9 44969771 to 44969774 3 - TSS region transcription start site region 89216
Tssr89217 9 44974239 to 44974250 11 - TSS region transcription start site region 89217
Tssr89218 9 44974345 to 44974359 14 - TSS region transcription start site region 89218
D9Mit255a 9 44979756 to 44979850 94 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 255a
D9Mit255b 9 44979796 to 44979850 54 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 255b
Tssr89219 9 44980330 to 44980341 11 - TSS region transcription start site region 89219
Tssr89220 9 44980342 to 44980369 27 - TSS region transcription start site region 89220
Tssr89221 9 44980390 to 44980437 47 - TSS region transcription start site region 89221
Tssr89222 9 44980439 to 44980455 16 - TSS region transcription start site region 89222
Tssr84704 9 44980536 to 44980558 22 + TSS region transcription start site region 84704
Cd3d 9 44981769 to 44987052 5283 + protein coding gene CD3 antigen, delta polypeptide
Tssr84705 9 44981779 to 44981798 19 + TSS region transcription start site region 84705
Tssr84706 9 44981801 to 44981834 33 + TSS region transcription start site region 84706
Tssr84707 9 44981847 to 44981864 17 + TSS region transcription start site region 84707
Tssr84708 9 44983659 to 44983663 4 + TSS region transcription start site region 84708
Tssr84709 9 44985435 to 44985454 19 + TSS region transcription start site region 84709
Tssr89223 9 44986530 to 44986548 18 - TSS region transcription start site region 89223
D9Mit23 9 44986720 to 44986926 206 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 23
Tssr89224 9 44987166 to 44987180 14 - TSS region transcription start site region 89224
Tssr89225 9 44987185 to 44987200 15 - TSS region transcription start site region 89225
Cpgi21680 9 44998226 to 44998488 262 CpG island CpG island 21680
Cd3e 9 44998740 to 45009627 10887 - protein coding gene CD3 antigen, epsilon polypeptide
Tssr89226 9 44998939 to 44998950 11 - TSS region transcription start site region 89226
Tssr89227 9 44998985 to 44999016 31 - TSS region transcription start site region 89227
Tssr89228 9 44999121 to 44999149 28 - TSS region transcription start site region 89228
Tssr89229 9 44999178 to 44999209 31 - TSS region transcription start site region 89229
Tssr89230 9 44999221 to 44999257 36 - TSS region transcription start site region 89230
Tssr89231 9 44999258 to 44999282 24 - TSS region transcription start site region 89231
Tssr89232 9 44999283 to 44999298 15 - TSS region transcription start site region 89232
Tssr89233 9 44999351 to 44999362 11 - TSS region transcription start site region 89233
Gm48719 9 44999429 to 45002985 3556 + antisense lncRNA gene predicted gene, 48719
Tssr84710 9 44999444 to 44999461 17 + TSS region transcription start site region 84710
Tssr89234 9 45001014 to 45001034 20 - TSS region transcription start site region 89234
Tssr89235 9 45001046 to 45001079 33 - TSS region transcription start site region 89235
Tssr89236 9 45001102 to 45001132 30 - TSS region transcription start site region 89236
Tssr84711 9 45002275 to 45002293 18 + TSS region transcription start site region 84711
Tssr89237 9 45002614 to 45002627 13 - TSS region transcription start site region 89237
Gm48720 9 45008142 to 45009347 1205 - unclassified gene predicted gene, 48720
Tssr89238 9 45009263 to 45009271 8 - TSS region transcription start site region 89238
Tssr89239 9 45009599 to 45009645 46 - TSS region transcription start site region 89239
Tssr89240 9 45009808 to 45009826 18 - TSS region transcription start site region 89240
Tssr89241 9 45009834 to 45009847 13 - TSS region transcription start site region 89241
Tssr89242 9 45009863 to 45009876 13 - TSS region transcription start site region 89242
Tssr89243 9 45011445 to 45011454 9 - TSS region transcription start site region 89243
Tssr84712 9 45039746 to 45039757 11 + TSS region transcription start site region 84712
Tssr84713 9 45039777 to 45039792 15 + TSS region transcription start site region 84713
Mpzl2 9 45040275 to 45054043 13768 + protein coding gene myelin protein zero-like 2
Tssr84714 9 45040419 to 45040451 32 + TSS region transcription start site region 84714
Cpgi21681 9 45042416 to 45042917 501 CpG island CpG island 21681
Tssr84715 9 45042535 to 45042551 16 + TSS region transcription start site region 84715
Tssr84716 9 45042565 to 45042623 58 + TSS region transcription start site region 84716
Tssr84717 9 45042627 to 45042660 33 + TSS region transcription start site region 84717
Tssr84718 9 45042663 to 45042669 6 + TSS region transcription start site region 84718
Cpgi21682 9 45044175 to 45044392 217 CpG island CpG island 21682
Cpgi21683 9 45047103 to 45047330 227 CpG island CpG island 21683
Gm48840 9 45051424 to 45055344 3920 - unclassified gene predicted gene, 48840
Cpgi21684 9 45055031 to 45055613 582 CpG island CpG island 21684
Tssr84719 9 45055166 to 45055195 29 + TSS region transcription start site region 84719
Mpzl3 9 45055181 to 45075042 19861 + protein coding gene myelin protein zero-like 3
Tssr84720 9 45055211 to 45055225 14 + TSS region transcription start site region 84720
Tssr84721 9 45055228 to 45055243 15 + TSS region transcription start site region 84721
Tssr89244 9 45055318 to 45055349 31 - TSS region transcription start site region 89244
Tssr89245 9 45064459 to 45064495 36 - TSS region transcription start site region 89245
Tssr84722 9 45079170 to 45079203 33 + TSS region transcription start site region 84722
Jaml 9 45079183 to 45108534 29351 + protein coding gene junction adhesion molecule like
Tssr84723 9 45079204 to 45079236 32 + TSS region transcription start site region 84723
Tssr84724 9 45086630 to 45086649 19 + TSS region transcription start site region 84724
Tssr84725 9 45102874 to 45102884 10 + TSS region transcription start site region 84725
Tssr84726 9 45103836 to 45103862 26 + TSS region transcription start site region 84726
Tssr84727 9 45103866 to 45103893 27 + TSS region transcription start site region 84727
Tssr84728 9 45103894 to 45103920 26 + TSS region transcription start site region 84728
Gm10684 9 45107176 to 45135606 28430 - lincRNA gene predicted gene 10684
Gm47596 9 45112022 to 45112855 833 - unclassified gene predicted gene, 47596
Tssr84729 9 45117813 to 45117876 63 + TSS region transcription start site region 84729
Scn2b 9 45117876 to 45130070 12194 + protein coding gene sodium channel, voltage-gated, type II, beta
Tssr84730 9 45117886 to 45117897 11 + TSS region transcription start site region 84730
Tssr84731 9 45121165 to 45121177 12 + TSS region transcription start site region 84731
Tssr84732 9 45121197 to 45121213 16 + TSS region transcription start site region 84732
Tssr84733 9 45122436 to 45122467 31 + TSS region transcription start site region 84733
Cpgi21685 9 45137949 to 45139281 1332 CpG island CpG island 21685
Tssr84734 9 45138296 to 45138305 9 + TSS region transcription start site region 84734
Tssr84735 9 45138314 to 45138321 7 + TSS region transcription start site region 84735
Tssr84736 9 45138390 to 45138403 13 + TSS region transcription start site region 84736
Tssr84737 9 45138457 to 45138462 5 + TSS region transcription start site region 84737
Tssr84738 9 45138528 to 45138537 9 + TSS region transcription start site region 84738
Tssr84739 9 45138540 to 45138549 9 + TSS region transcription start site region 84739
Tssr84740 9 45138550 to 45138561 11 + TSS region transcription start site region 84740
Tssr84741 9 45138576 to 45138594 18 + TSS region transcription start site region 84741
Tssr84742 9 45138600 to 45138613 13 + TSS region transcription start site region 84742
Tssr84743 9 45138616 to 45138631 15 + TSS region transcription start site region 84743
Tssr84744 9 45138747 to 45138758 11 + TSS region transcription start site region 84744
Tssr84745 9 45138762 to 45138769 7 + TSS region transcription start site region 84745
Tssr84746 9 45138791 to 45138798 7 + TSS region transcription start site region 84746
Tssr84747 9 45138800 to 45138840 40 + TSS region transcription start site region 84747
Tssr84748 9 45138864 to 45138880 16 + TSS region transcription start site region 84748
Tssr84749 9 45138882 to 45138898 16 + TSS region transcription start site region 84749
Tssr84750 9 45138899 to 45138918 19 + TSS region transcription start site region 84750
Tssr84751 9 45138929 to 45138939 10 + TSS region transcription start site region 84751
Scn4b 9 45139042 to 45154061 15019 + protein coding gene sodium channel, type IV, beta
Cpgi21686 9 45145686 to 45146181 495 CpG island CpG island 21686
Tssr84752 9 45152936 to 45152939 3 + TSS region transcription start site region 84752
Gm39327 9 45167053 to 45169180 2127 - lincRNA gene predicted gene, 39327
Tmprss4 9 45172726 to 45204092 31366 - protein coding gene transmembrane protease, serine 4
Gm17099 9 45172997 to 45175161 2164 + antisense lncRNA gene predicted gene 17099
Tssr84753 9 45189491 to 45189514 23 + TSS region transcription start site region 84753
Tssr84754 9 45189987 to 45189991 4 + TSS region transcription start site region 84754
BC049352 9 45195217 to 45251370 56153 + protein coding gene cDNA sequence BC049352
Tssr89246 9 45204024 to 45204048 24 - TSS region transcription start site region 89246
Tssr89247 9 45204067 to 45204077 10 - TSS region transcription start site region 89247
Tssr89248 9 45204083 to 45204106 23 - TSS region transcription start site region 89248
D9Mit68 9 45232548 to 45232683 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 68
Tssr89249 9 45245511 to 45245546 35 - TSS region transcription start site region 89249
Tssr84755 9 45245639 to 45245683 44 + TSS region transcription start site region 84755
Tssr89250 9 45246174 to 45246178 4 - TSS region transcription start site region 89250
Tssr84756 9 45246318 to 45246342 24 + TSS region transcription start site region 84756
Tssr84757 9 45246371 to 45246399 28 + TSS region transcription start site region 84757
Tssr89251 9 45249978 to 45250003 25 - TSS region transcription start site region 89251
Il10ra 9 45253837 to 45269149 15312 - protein coding gene interleukin 10 receptor, alpha
Cpgi21687 9 45256173 to 45257200 1027 CpG island CpG island 21687
Tssr89252 9 45259626 to 45259641 15 - TSS region transcription start site region 89252
Gm20612 9 45261055 to 45261290 235 + pseudogene predicted gene 20612
Tssr89253 9 45262889 to 45262939 50 - TSS region transcription start site region 89253
Tssr89254 9 45262956 to 45263008 52 - TSS region transcription start site region 89254
Tssr89255 9 45263046 to 45263068 22 - TSS region transcription start site region 89255
Tssr89256 9 45263070 to 45263099 29 - TSS region transcription start site region 89256
Tssr89257 9 45264176 to 45264190 14 - TSS region transcription start site region 89257
Tssr89258 9 45264217 to 45264234 17 - TSS region transcription start site region 89258
Tssr89259 9 45264240 to 45264251 11 - TSS region transcription start site region 89259
Tssr84758 9 45264882 to 45264895 13 + TSS region transcription start site region 84758
Mir7086 9 45266643 to 45266707 64 - miRNA gene microRNA 7086
Cpgi21688 9 45268791 to 45269322 531 CpG island CpG island 21688
Tssr89260 9 45268860 to 45268872 12 - TSS region transcription start site region 89260
Tssr89261 9 45269135 to 45269156 21 - TSS region transcription start site region 89261
Tssr89262 9 45272360 to 45272373 13 - TSS region transcription start site region 89262
Tssr84759 9 45274893 to 45274906 13 + TSS region transcription start site region 84759
Tssr84760 9 45281094 to 45281134 40 + TSS region transcription start site region 84760
Tssr2847 9 45293243 to 45293244 1 + TSS region transcription start site region 2847
Tssr84761 9 45299405 to 45299436 31 + TSS region transcription start site region 84761
Cpgi21689 9 45300515 to 45300851 336 CpG island CpG island 21689
Gm47964 9 45301962 to 45302171 209 + pseudogene predicted gene, 47964
D9Mit69 9 45308095 to 45308273 178 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 69
Lncbate3 9 45318266 to 45322079 3813 - antisense lncRNA gene brown adipose tissue enriched long noncoding RNA 3
Tssr84762 9 45318982 to 45319019 37 + TSS region transcription start site region 84762
Tssr84763 9 45319021 to 45319062 41 + TSS region transcription start site region 84763
Tssr84764 9 45319072 to 45319086 14 + TSS region transcription start site region 84764
Tmprss13 9 45319100 to 45347581 28481 + protein coding gene transmembrane protease, serine 13
Tssr84765 9 45328494 to 45328508 14 + TSS region transcription start site region 84765
Tssr84766 9 45346804 to 45346807 3 + TSS region transcription start site region 84766