Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44790643-44954665

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ift46 9 44772915 to 44792714 19799 + protein coding gene intraflagellar transport 46
Tmem25 9 44793772 to 44799271 5499 - protein coding gene transmembrane protein 25
Cpgi21676 9 44798902 to 44800035 1133 CpG island CpG island 21676
Tssr89200 9 44799179 to 44799255 76 - TSS region transcription start site region 89200
Gm48702 9 44799258 to 44802838 3580 + antisense lncRNA gene predicted gene, 48702
Ttc36 9 44799400 to 44802951 3551 - protein coding gene tetratricopeptide repeat domain 36
Tssr89201 9 44801778 to 44801791 13 - TSS region transcription start site region 89201
Tssr89202 9 44801803 to 44801818 15 - TSS region transcription start site region 89202
Tssr89203 9 44802839 to 44802880 41 - TSS region transcription start site region 89203
Tssr89204 9 44802883 to 44802926 43 - TSS region transcription start site region 89204
Tssr89205 9 44802952 to 44802961 9 - TSS region transcription start site region 89205
Tssr89206 9 44802966 to 44802994 28 - TSS region transcription start site region 89206
Kmt2a 9 44803355 to 44881296 77941 - protein coding gene lysine (K)-specific methyltransferase 2A
Gm48314 9 44856437 to 44859175 2738 - unclassified gene predicted gene, 48314
Tssr89207 9 44865402 to 44865405 3 - TSS region transcription start site region 89207
Gm30816 9 44865643 to 44879665 14022 + lncRNA gene predicted gene, 30816
Tssr89208 9 44878664 to 44878671 7 - TSS region transcription start site region 89208
Tssr89209 9 44879091 to 44879095 4 - TSS region transcription start site region 89209
Gm46109 9 44879914 to 44880492 578 + lncRNA gene predicted gene, 46109
Cpgi21677 9 44880286 to 44883258 2972 CpG island CpG island 21677
Gm39326 9 44881194 to 44887161 5967 + antisense lncRNA gene predicted gene, 39326
Tssr89210 9 44881277 to 44881323 46 - TSS region transcription start site region 89210
Tssr89211 9 44882180 to 44882216 36 - TSS region transcription start site region 89211
Gm30883 9 44888824 to 44893205 4381 - lncRNA gene predicted gene, 30883
Gm26249 9 44897865 to 44897982 117 + snRNA gene predicted gene, 26249
Atp5l 9 44913248 to 44920742 7494 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G
Tssr84703 9 44920190 to 44920218 28 + TSS region transcription start site region 84703
Cpgi21678 9 44920230 to 44920961 731 CpG island CpG island 21678
Tssr89212 9 44920698 to 44920725 27 - TSS region transcription start site region 89212
Gm30934 9 44920840 to 44921442 602 + antisense lncRNA gene predicted gene, 30934
Ube4a 9 44923127 to 44965600 42473 - protein coding gene ubiquitination factor E4A
Tssr89213 9 44925655 to 44925669 14 - TSS region transcription start site region 89213
Tssr89214 9 44945929 to 44945937 8 - TSS region transcription start site region 89214