Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44639179-44959255

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ddx6 9 44604892 to 44640731 35839 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Tssr84692 9 44641352 to 44641355 3 + TSS region transcription start site region 84692
Tssr89186 9 44648837 to 44648886 49 - TSS region transcription start site region 89186
Gm47238 9 44650921 to 44652152 1231 + pseudogene predicted gene, 47238
Gm3953 9 44663928 to 44664716 788 - pseudogene predicted gene 3953
BC049987 9 44670453 to 44672238 1785 - lincRNA gene cDNA sequence BC049987
Tssr89187 9 44672256 to 44672262 6 - TSS region transcription start site region 89187
Tssr84693 9 44673185 to 44673188 3 + TSS region transcription start site region 84693
Tssr84694 9 44673227 to 44673246 19 + TSS region transcription start site region 84694
Treh 9 44673233 to 44686305 13072 + protein coding gene trehalase (brush-border membrane glycoprotein)
Phldb1 9 44686304 to 44735198 48894 - protein coding gene pleckstrin homology like domain, family B, member 1
Cpgi21670 9 44707896 to 44708673 777 CpG island CpG island 21670
Gm47239 9 44713010 to 44713713 703 + unclassified gene predicted gene, 47239
Tssr89188 9 44713196 to 44713218 22 - TSS region transcription start site region 89188
Cpgi21671 9 44715215 to 44716110 895 CpG island CpG island 21671
Tssr89189 9 44718775 to 44718778 3 - TSS region transcription start site region 89189
Tssr84695 9 44720791 to 44720835 44 + TSS region transcription start site region 84695
Cpgi21672 9 44721011 to 44721524 513 CpG island CpG island 21672
Tssr89190 9 44721289 to 44721341 52 - TSS region transcription start site region 89190
Tssr89191 9 44721383 to 44721484 101 - TSS region transcription start site region 89191
Cpgi21673 9 44733539 to 44735270 1731 CpG island CpG island 21673
Tssr84696 9 44733968 to 44733983 15 + TSS region transcription start site region 84696
Tssr89192 9 44734012 to 44734024 12 - TSS region transcription start site region 89192
Tssr89193 9 44734200 to 44734211 11 - TSS region transcription start site region 89193
Tssr89194 9 44735184 to 44735187 3 - TSS region transcription start site region 89194
Tssr89195 9 44735189 to 44735213 24 - TSS region transcription start site region 89195
Tssr89196 9 44735216 to 44735240 24 - TSS region transcription start site region 89196
Gm24166 9 44736813 to 44736947 134 - snoRNA gene predicted gene, 24166
Arcn1 9 44742143 to 44767808 25665 - protein coding gene archain 1
Tssr89197 9 44743797 to 44743837 40 - TSS region transcription start site region 89197
Gm48562 9 44753104 to 44753851 747 - unclassified gene predicted gene, 48562
Cpgi21674 9 44767054 to 44767973 919 CpG island CpG island 21674
Tssr2846 9 44767400 to 44767424 24 + TSS region transcription start site region 2846
Tssr89198 9 44767792 to 44767838 46 - TSS region transcription start site region 89198
Tssr89199 9 44767839 to 44767850 11 - TSS region transcription start site region 89199
Cpgi21675 9 44772815 to 44773211 396 CpG island CpG island 21675
Tssr84697 9 44772909 to 44772949 40 + TSS region transcription start site region 84697
Ift46 9 44772915 to 44792714 19799 + protein coding gene intraflagellar transport 46
Tssr84698 9 44772951 to 44772964 13 + TSS region transcription start site region 84698
Tssr84699 9 44772975 to 44772980 5 + TSS region transcription start site region 84699
Tssr84700 9 44772988 to 44773015 27 + TSS region transcription start site region 84700
Tssr84701 9 44773027 to 44773067 40 + TSS region transcription start site region 84701
Tssr84702 9 44773191 to 44773207 16 + TSS region transcription start site region 84702
Tmem25 9 44793772 to 44799271 5499 - protein coding gene transmembrane protein 25
Cpgi21676 9 44798902 to 44800035 1133 CpG island CpG island 21676
Tssr89200 9 44799179 to 44799255 76 - TSS region transcription start site region 89200
Gm48702 9 44799258 to 44802838 3580 + antisense lncRNA gene predicted gene, 48702
Ttc36 9 44799400 to 44802951 3551 - protein coding gene tetratricopeptide repeat domain 36
Tssr89201 9 44801778 to 44801791 13 - TSS region transcription start site region 89201
Tssr89202 9 44801803 to 44801818 15 - TSS region transcription start site region 89202
Tssr89203 9 44802839 to 44802880 41 - TSS region transcription start site region 89203
Tssr89204 9 44802883 to 44802926 43 - TSS region transcription start site region 89204
Tssr89205 9 44802952 to 44802961 9 - TSS region transcription start site region 89205
Tssr89206 9 44802966 to 44802994 28 - TSS region transcription start site region 89206
Kmt2a 9 44803355 to 44881296 77941 - protein coding gene lysine (K)-specific methyltransferase 2A
Gm48314 9 44856437 to 44859175 2738 - unclassified gene predicted gene, 48314
Tssr89207 9 44865402 to 44865405 3 - TSS region transcription start site region 89207
Gm30816 9 44865643 to 44879665 14022 + lncRNA gene predicted gene, 30816
Tssr89208 9 44878664 to 44878671 7 - TSS region transcription start site region 89208
Tssr89209 9 44879091 to 44879095 4 - TSS region transcription start site region 89209
Gm46109 9 44879914 to 44880492 578 + lncRNA gene predicted gene, 46109
Cpgi21677 9 44880286 to 44883258 2972 CpG island CpG island 21677
Gm39326 9 44881194 to 44887161 5967 + antisense lncRNA gene predicted gene, 39326
Tssr89210 9 44881277 to 44881323 46 - TSS region transcription start site region 89210
Tssr89211 9 44882180 to 44882216 36 - TSS region transcription start site region 89211
Gm30883 9 44888824 to 44893205 4381 - lncRNA gene predicted gene, 30883
Gm26249 9 44897865 to 44897982 117 + snRNA gene predicted gene, 26249
Atp5l 9 44913248 to 44920742 7494 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G
Tssr84703 9 44920190 to 44920218 28 + TSS region transcription start site region 84703
Cpgi21678 9 44920230 to 44920961 731 CpG island CpG island 21678
Tssr89212 9 44920698 to 44920725 27 - TSS region transcription start site region 89212
Gm30934 9 44920840 to 44921442 602 + antisense lncRNA gene predicted gene, 30934
Ube4a 9 44923127 to 44965600 42473 - protein coding gene ubiquitination factor E4A
Tssr89213 9 44925655 to 44925669 14 - TSS region transcription start site region 89213
Tssr89214 9 44945929 to 44945937 8 - TSS region transcription start site region 89214
Gm19121 9 44955715 to 44956736 1021 + pseudogene predicted gene, 19121