Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44428860-46108872

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461 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
Tssr89159 9 44432928 to 44432934 6 - TSS region transcription start site region 89159
Foxr1 9 44434234 to 44440868 6634 - protein coding gene forkhead box R1
Cpgi21658 9 44440526 to 44441185 659 CpG island CpG island 21658
Tssr89160 9 44441191 to 44441230 39 - TSS region transcription start site region 89160
Upk2 9 44452715 to 44454767 2052 - protein coding gene uroplakin 2
Tssr89161 9 44454715 to 44454726 11 - TSS region transcription start site region 89161
Tssr89162 9 44454730 to 44454742 12 - TSS region transcription start site region 89162
Tssr89163 9 44454757 to 44454773 16 - TSS region transcription start site region 89163
Gm9830 9 44464243 to 44464599 356 + pseudogene predicted gene 9830
C030014I23Rik 9 44467465 to 44478011 10546 + lincRNA gene RIKEN cDNA C030014I23 gene
Gm22540 9 44476416 to 44476532 116 - snRNA gene predicted gene, 22540
Gm47204 9 44477928 to 44479759 1831 - lincRNA gene predicted gene, 47204
Cpgi21659 9 44478440 to 44478734 294 CpG island CpG island 21659
Cpgi21660 9 44479156 to 44479493 337 CpG island CpG island 21660
Tssr89164 9 44479724 to 44479743 19 - TSS region transcription start site region 89164
Tssr89165 9 44479752 to 44479780 28 - TSS region transcription start site region 89165
Cpgi21661 9 44479907 to 44480301 394 CpG island CpG island 21661
Gm47205 9 44481514 to 44483803 2289 - unclassified gene predicted gene, 47205
Cpgi21662 9 44482483 to 44483699 1216 CpG island CpG island 21662
Tssr84666 9 44482531 to 44482552 21 + TSS region transcription start site region 84666
Tssr84667 9 44482740 to 44482779 39 + TSS region transcription start site region 84667
Tssr84668 9 44482783 to 44482815 32 + TSS region transcription start site region 84668
Bcl9l 9 44482825 to 44511896 29071 + protein coding gene B cell CLL/lymphoma 9-like
Tssr84669 9 44483142 to 44483167 25 + TSS region transcription start site region 84669
Tssr84670 9 44483183 to 44483199 16 + TSS region transcription start site region 84670
Tssr84671 9 44486588 to 44486624 36 + TSS region transcription start site region 84671
Tssr84672 9 44487230 to 44487265 35 + TSS region transcription start site region 84672
Cpgi21663 9 44489735 to 44490247 512 CpG island CpG island 21663
Tssr84673 9 44498228 to 44498237 9 + TSS region transcription start site region 84673
Tssr2843 9 44498251 to 44498285 34 + TSS region transcription start site region 2843
Cpgi21664 9 44498385 to 44499338 953 CpG island CpG island 21664
Tssr84674 9 44499126 to 44499159 33 + TSS region transcription start site region 84674
Cpgi21665 9 44510119 to 44510370 251 CpG island CpG island 21665
Tssr89166 9 44510181 to 44510190 9 - TSS region transcription start site region 89166
Cxcr5 9 44511787 to 44526421 14634 - protein coding gene chemokine (C-X-C motif) receptor 5
Cpgi21666 9 44513521 to 44514109 588 CpG island CpG island 21666
Tssr84675 9 44522135 to 44522166 31 + TSS region transcription start site region 84675
Tssr89167 9 44525968 to 44525972 4 - TSS region transcription start site region 89167
Tssr89168 9 44526397 to 44526423 26 - TSS region transcription start site region 89168
Tssr89169 9 44526424 to 44526440 16 - TSS region transcription start site region 89169
Tssr89170 9 44526469 to 44526501 32 - TSS region transcription start site region 89170
Tssr89171 9 44526504 to 44526515 11 - TSS region transcription start site region 89171
Tssr89172 9 44551237 to 44551264 27 - TSS region transcription start site region 89172
Tssr89173 9 44561849 to 44561854 5 - TSS region transcription start site region 89173
Tssr89174 9 44567714 to 44567721 7 - TSS region transcription start site region 89174
Tssr89175 9 44567763 to 44567775 12 - TSS region transcription start site region 89175
Tssr2844 9 44567785 to 44567786 1 - TSS region transcription start site region 2844
Tssr89176 9 44568109 to 44568154 45 - TSS region transcription start site region 89176
Tssr89177 9 44573435 to 44573447 12 - TSS region transcription start site region 89177
Gm47230 9 44579608 to 44584652 5044 + lincRNA gene predicted gene, 47230
Tssr84676 9 44579617 to 44579630 13 + TSS region transcription start site region 84676
Tssr89178 9 44581517 to 44581531 14 - TSS region transcription start site region 89178
Tssr84677 9 44581653 to 44581678 25 + TSS region transcription start site region 84677
Tssr84678 9 44581688 to 44581708 20 + TSS region transcription start site region 84678
Tssr84679 9 44581714 to 44581726 12 + TSS region transcription start site region 84679
Tssr89179 9 44582464 to 44582470 6 - TSS region transcription start site region 89179
Cpgi21667 9 44582529 to 44582751 222 CpG island CpG island 21667
Gm47231 9 44596563 to 44598018 1455 - lincRNA gene predicted gene, 47231
Gm47232 9 44598855 to 44599720 865 - lincRNA gene predicted gene, 47232
Cpgi21668 9 44598922 to 44599102 180 CpG island CpG island 21668
Tssr89180 9 44603468 to 44603478 10 - TSS region transcription start site region 89180
Tssr89181 9 44603494 to 44603515 21 - TSS region transcription start site region 89181
Tssr84680 9 44603694 to 44603719 25 + TSS region transcription start site region 84680
Tssr84681 9 44603776 to 44603790 14 + TSS region transcription start site region 84681
Cpgi21669 9 44603935 to 44605642 1707 CpG island CpG island 21669
Tssr84682 9 44604072 to 44604087 15 + TSS region transcription start site region 84682
Tssr89182 9 44604588 to 44604595 7 - TSS region transcription start site region 89182
Tssr84683 9 44604664 to 44604700 36 + TSS region transcription start site region 84683
Tssr2845 9 44604709 to 44604714 5 + TSS region transcription start site region 2845
Tssr89183 9 44604742 to 44604757 15 - TSS region transcription start site region 89183
Tssr89184 9 44604778 to 44604815 37 - TSS region transcription start site region 89184
Tssr84684 9 44604844 to 44604921 77 + TSS region transcription start site region 84684
Ddx6 9 44604892 to 44640731 35839 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Tssr84685 9 44604933 to 44604950 17 + TSS region transcription start site region 84685
Tssr89185 9 44605344 to 44605371 27 - TSS region transcription start site region 89185
Tssr84686 9 44606942 to 44606947 5 + TSS region transcription start site region 84686
Tssr84687 9 44607492 to 44607498 6 + TSS region transcription start site region 84687
Tssr84688 9 44608535 to 44608544 9 + TSS region transcription start site region 84688
Gm30671 9 44610405 to 44610722 317 - pseudogene predicted gene, 30671
E030022I16Rik 9 44618253 to 44621018 2765 + unclassified non-coding RNA gene RIKEN cDNA E030022I16 gene
Tssr84689 9 44630932 to 44630936 4 + TSS region transcription start site region 84689
Gm47234 9 44634195 to 44635103 908 + unclassified gene predicted gene, 47234
Tssr84690 9 44638713 to 44638720 7 + TSS region transcription start site region 84690
Tssr84691 9 44639148 to 44639158 10 + TSS region transcription start site region 84691
Tssr84692 9 44641352 to 44641355 3 + TSS region transcription start site region 84692
Tssr89186 9 44648837 to 44648886 49 - TSS region transcription start site region 89186
Gm47238 9 44650921 to 44652152 1231 + pseudogene predicted gene, 47238
Gm3953 9 44663928 to 44664716 788 - pseudogene predicted gene 3953
BC049987 9 44670453 to 44672238 1785 - lincRNA gene cDNA sequence BC049987
Tssr89187 9 44672256 to 44672262 6 - TSS region transcription start site region 89187
Tssr84693 9 44673185 to 44673188 3 + TSS region transcription start site region 84693
Tssr84694 9 44673227 to 44673246 19 + TSS region transcription start site region 84694
Treh 9 44673233 to 44686305 13072 + protein coding gene trehalase (brush-border membrane glycoprotein)
Phldb1 9 44686304 to 44735198 48894 - protein coding gene pleckstrin homology like domain, family B, member 1
Cpgi21670 9 44707896 to 44708673 777 CpG island CpG island 21670
Gm47239 9 44713010 to 44713713 703 + unclassified gene predicted gene, 47239
Tssr89188 9 44713196 to 44713218 22 - TSS region transcription start site region 89188
Cpgi21671 9 44715215 to 44716110 895 CpG island CpG island 21671
Tssr89189 9 44718775 to 44718778 3 - TSS region transcription start site region 89189
Tssr84695 9 44720791 to 44720835 44 + TSS region transcription start site region 84695
Cpgi21672 9 44721011 to 44721524 513 CpG island CpG island 21672
Tssr89190 9 44721289 to 44721341 52 - TSS region transcription start site region 89190
Tssr89191 9 44721383 to 44721484 101 - TSS region transcription start site region 89191
Cpgi21673 9 44733539 to 44735270 1731 CpG island CpG island 21673
Tssr84696 9 44733968 to 44733983 15 + TSS region transcription start site region 84696
Tssr89192 9 44734012 to 44734024 12 - TSS region transcription start site region 89192
Tssr89193 9 44734200 to 44734211 11 - TSS region transcription start site region 89193
Tssr89194 9 44735184 to 44735187 3 - TSS region transcription start site region 89194
Tssr89195 9 44735189 to 44735213 24 - TSS region transcription start site region 89195
Tssr89196 9 44735216 to 44735240 24 - TSS region transcription start site region 89196
Gm24166 9 44736813 to 44736947 134 - snoRNA gene predicted gene, 24166
Arcn1 9 44742143 to 44767808 25665 - protein coding gene archain 1
Tssr89197 9 44743797 to 44743837 40 - TSS region transcription start site region 89197
Gm48562 9 44753104 to 44753851 747 - unclassified gene predicted gene, 48562
Cpgi21674 9 44767054 to 44767973 919 CpG island CpG island 21674
Tssr2846 9 44767400 to 44767424 24 + TSS region transcription start site region 2846
Tssr89198 9 44767792 to 44767838 46 - TSS region transcription start site region 89198
Tssr89199 9 44767839 to 44767850 11 - TSS region transcription start site region 89199
Cpgi21675 9 44772815 to 44773211 396 CpG island CpG island 21675
Tssr84697 9 44772909 to 44772949 40 + TSS region transcription start site region 84697
Ift46 9 44772915 to 44792714 19799 + protein coding gene intraflagellar transport 46
Tssr84698 9 44772951 to 44772964 13 + TSS region transcription start site region 84698
Tssr84699 9 44772975 to 44772980 5 + TSS region transcription start site region 84699
Tssr84700 9 44772988 to 44773015 27 + TSS region transcription start site region 84700
Tssr84701 9 44773027 to 44773067 40 + TSS region transcription start site region 84701
Tssr84702 9 44773191 to 44773207 16 + TSS region transcription start site region 84702
Tmem25 9 44793772 to 44799271 5499 - protein coding gene transmembrane protein 25
Cpgi21676 9 44798902 to 44800035 1133 CpG island CpG island 21676
Tssr89200 9 44799179 to 44799255 76 - TSS region transcription start site region 89200
Gm48702 9 44799258 to 44802838 3580 + antisense lncRNA gene predicted gene, 48702
Ttc36 9 44799400 to 44802951 3551 - protein coding gene tetratricopeptide repeat domain 36
Tssr89201 9 44801778 to 44801791 13 - TSS region transcription start site region 89201
Tssr89202 9 44801803 to 44801818 15 - TSS region transcription start site region 89202
Tssr89203 9 44802839 to 44802880 41 - TSS region transcription start site region 89203
Tssr89204 9 44802883 to 44802926 43 - TSS region transcription start site region 89204
Tssr89205 9 44802952 to 44802961 9 - TSS region transcription start site region 89205
Tssr89206 9 44802966 to 44802994 28 - TSS region transcription start site region 89206
Kmt2a 9 44803355 to 44881296 77941 - protein coding gene lysine (K)-specific methyltransferase 2A
Gm48314 9 44856437 to 44859175 2738 - unclassified gene predicted gene, 48314
Tssr89207 9 44865402 to 44865405 3 - TSS region transcription start site region 89207
Gm30816 9 44865643 to 44879665 14022 + lncRNA gene predicted gene, 30816
Tssr89208 9 44878664 to 44878671 7 - TSS region transcription start site region 89208
Tssr89209 9 44879091 to 44879095 4 - TSS region transcription start site region 89209
Gm46109 9 44879914 to 44880492 578 + lncRNA gene predicted gene, 46109
Cpgi21677 9 44880286 to 44883258 2972 CpG island CpG island 21677
Gm39326 9 44881194 to 44887161 5967 + antisense lncRNA gene predicted gene, 39326
Tssr89210 9 44881277 to 44881323 46 - TSS region transcription start site region 89210
Tssr89211 9 44882180 to 44882216 36 - TSS region transcription start site region 89211
Gm30883 9 44888824 to 44893205 4381 - lncRNA gene predicted gene, 30883
Gm26249 9 44897865 to 44897982 117 + snRNA gene predicted gene, 26249
Atp5l 9 44913248 to 44920742 7494 - protein coding gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G
Tssr84703 9 44920190 to 44920218 28 + TSS region transcription start site region 84703
Cpgi21678 9 44920230 to 44920961 731 CpG island CpG island 21678
Tssr89212 9 44920698 to 44920725 27 - TSS region transcription start site region 89212
Gm30934 9 44920840 to 44921442 602 + antisense lncRNA gene predicted gene, 30934
Ube4a 9 44923127 to 44965600 42473 - protein coding gene ubiquitination factor E4A
Tssr89213 9 44925655 to 44925669 14 - TSS region transcription start site region 89213
Tssr89214 9 44945929 to 44945937 8 - TSS region transcription start site region 89214
Gm19121 9 44955715 to 44956736 1021 + pseudogene predicted gene, 19121
Cpgi21679 9 44965244 to 44965770 526 CpG island CpG island 21679
Tssr89215 9 44965519 to 44965586 67 - TSS region transcription start site region 89215
Cd3g 9 44969572 to 44980431 10859 - protein coding gene CD3 antigen, gamma polypeptide
Tssr89216 9 44969771 to 44969774 3 - TSS region transcription start site region 89216
Tssr89217 9 44974239 to 44974250 11 - TSS region transcription start site region 89217
Tssr89218 9 44974345 to 44974359 14 - TSS region transcription start site region 89218
D9Mit255a 9 44979756 to 44979850 94 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 255a
D9Mit255b 9 44979796 to 44979850 54 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 255b
Tssr89219 9 44980330 to 44980341 11 - TSS region transcription start site region 89219
Tssr89220 9 44980342 to 44980369 27 - TSS region transcription start site region 89220
Tssr89221 9 44980390 to 44980437 47 - TSS region transcription start site region 89221
Tssr89222 9 44980439 to 44980455 16 - TSS region transcription start site region 89222
Tssr84704 9 44980536 to 44980558 22 + TSS region transcription start site region 84704
Cd3d 9 44981769 to 44987052 5283 + protein coding gene CD3 antigen, delta polypeptide
Tssr84705 9 44981779 to 44981798 19 + TSS region transcription start site region 84705
Tssr84706 9 44981801 to 44981834 33 + TSS region transcription start site region 84706
Tssr84707 9 44981847 to 44981864 17 + TSS region transcription start site region 84707
Tssr84708 9 44983659 to 44983663 4 + TSS region transcription start site region 84708
Tssr84709 9 44985435 to 44985454 19 + TSS region transcription start site region 84709
Tssr89223 9 44986530 to 44986548 18 - TSS region transcription start site region 89223
D9Mit23 9 44986720 to 44986926 206 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 23
Tssr89224 9 44987166 to 44987180 14 - TSS region transcription start site region 89224
Tssr89225 9 44987185 to 44987200 15 - TSS region transcription start site region 89225
Cpgi21680 9 44998226 to 44998488 262 CpG island CpG island 21680
Cd3e 9 44998740 to 45009627 10887 - protein coding gene CD3 antigen, epsilon polypeptide
Tssr89226 9 44998939 to 44998950 11 - TSS region transcription start site region 89226
Tssr89227 9 44998985 to 44999016 31 - TSS region transcription start site region 89227
Tssr89228 9 44999121 to 44999149 28 - TSS region transcription start site region 89228
Tssr89229 9 44999178 to 44999209 31 - TSS region transcription start site region 89229
Tssr89230 9 44999221 to 44999257 36 - TSS region transcription start site region 89230
Tssr89231 9 44999258 to 44999282 24 - TSS region transcription start site region 89231
Tssr89232 9 44999283 to 44999298 15 - TSS region transcription start site region 89232
Tssr89233 9 44999351 to 44999362 11 - TSS region transcription start site region 89233
Gm48719 9 44999429 to 45002985 3556 + antisense lncRNA gene predicted gene, 48719
Tssr84710 9 44999444 to 44999461 17 + TSS region transcription start site region 84710
Tssr89234 9 45001014 to 45001034 20 - TSS region transcription start site region 89234
Tssr89235 9 45001046 to 45001079 33 - TSS region transcription start site region 89235
Tssr89236 9 45001102 to 45001132 30 - TSS region transcription start site region 89236
Tssr84711 9 45002275 to 45002293 18 + TSS region transcription start site region 84711
Tssr89237 9 45002614 to 45002627 13 - TSS region transcription start site region 89237