Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44413228-44583237

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc84 9 44410159 to 44418081 7922 - protein coding gene coiled-coil domain containing 84
Cpgi21657 9 44417574 to 44418382 808 CpG island CpG island 21657
Tssr89157 9 44417983 to 44418026 43 - TSS region transcription start site region 89157
Tssr89158 9 44418030 to 44418056 26 - TSS region transcription start site region 89158
Tssr84665 9 44419325 to 44419337 12 + TSS region transcription start site region 84665
Gm47186 9 44419938 to 44423391 3453 - lincRNA gene predicted gene, 47186
Tssr89159 9 44432928 to 44432934 6 - TSS region transcription start site region 89159
Foxr1 9 44434234 to 44440868 6634 - protein coding gene forkhead box R1
Cpgi21658 9 44440526 to 44441185 659 CpG island CpG island 21658
Tssr89160 9 44441191 to 44441230 39 - TSS region transcription start site region 89160
Upk2 9 44452715 to 44454767 2052 - protein coding gene uroplakin 2
Tssr89161 9 44454715 to 44454726 11 - TSS region transcription start site region 89161
Tssr89162 9 44454730 to 44454742 12 - TSS region transcription start site region 89162
Tssr89163 9 44454757 to 44454773 16 - TSS region transcription start site region 89163
Gm9830 9 44464243 to 44464599 356 + pseudogene predicted gene 9830
C030014I23Rik 9 44467465 to 44478011 10546 + lincRNA gene RIKEN cDNA C030014I23 gene
Gm22540 9 44476416 to 44476532 116 - snRNA gene predicted gene, 22540
Gm47204 9 44477928 to 44479759 1831 - lincRNA gene predicted gene, 47204
Cpgi21659 9 44478440 to 44478734 294 CpG island CpG island 21659
Cpgi21660 9 44479156 to 44479493 337 CpG island CpG island 21660
Tssr89164 9 44479724 to 44479743 19 - TSS region transcription start site region 89164
Tssr89165 9 44479752 to 44479780 28 - TSS region transcription start site region 89165
Cpgi21661 9 44479907 to 44480301 394 CpG island CpG island 21661
Gm47205 9 44481514 to 44483803 2289 - unclassified gene predicted gene, 47205
Cpgi21662 9 44482483 to 44483699 1216 CpG island CpG island 21662
Tssr84666 9 44482531 to 44482552 21 + TSS region transcription start site region 84666
Tssr84667 9 44482740 to 44482779 39 + TSS region transcription start site region 84667
Tssr84668 9 44482783 to 44482815 32 + TSS region transcription start site region 84668
Bcl9l 9 44482825 to 44511896 29071 + protein coding gene B cell CLL/lymphoma 9-like
Tssr84669 9 44483142 to 44483167 25 + TSS region transcription start site region 84669
Tssr84670 9 44483183 to 44483199 16 + TSS region transcription start site region 84670
Tssr84671 9 44486588 to 44486624 36 + TSS region transcription start site region 84671
Tssr84672 9 44487230 to 44487265 35 + TSS region transcription start site region 84672
Cpgi21663 9 44489735 to 44490247 512 CpG island CpG island 21663
Tssr84673 9 44498228 to 44498237 9 + TSS region transcription start site region 84673
Tssr2843 9 44498251 to 44498285 34 + TSS region transcription start site region 2843
Cpgi21664 9 44498385 to 44499338 953 CpG island CpG island 21664
Tssr84674 9 44499126 to 44499159 33 + TSS region transcription start site region 84674
Cpgi21665 9 44510119 to 44510370 251 CpG island CpG island 21665
Tssr89166 9 44510181 to 44510190 9 - TSS region transcription start site region 89166
Cxcr5 9 44511787 to 44526421 14634 - protein coding gene chemokine (C-X-C motif) receptor 5
Cpgi21666 9 44513521 to 44514109 588 CpG island CpG island 21666
Tssr84675 9 44522135 to 44522166 31 + TSS region transcription start site region 84675
Tssr89167 9 44525968 to 44525972 4 - TSS region transcription start site region 89167
Tssr89168 9 44526397 to 44526423 26 - TSS region transcription start site region 89168
Tssr89169 9 44526424 to 44526440 16 - TSS region transcription start site region 89169
Tssr89170 9 44526469 to 44526501 32 - TSS region transcription start site region 89170
Tssr89171 9 44526504 to 44526515 11 - TSS region transcription start site region 89171
Tssr89172 9 44551237 to 44551264 27 - TSS region transcription start site region 89172
Tssr89173 9 44561849 to 44561854 5 - TSS region transcription start site region 89173
Tssr89174 9 44567714 to 44567721 7 - TSS region transcription start site region 89174
Tssr89175 9 44567763 to 44567775 12 - TSS region transcription start site region 89175
Tssr2844 9 44567785 to 44567786 1 - TSS region transcription start site region 2844
Tssr89176 9 44568109 to 44568154 45 - TSS region transcription start site region 89176
Tssr89177 9 44573435 to 44573447 12 - TSS region transcription start site region 89177
Gm47230 9 44579608 to 44584652 5044 + lincRNA gene predicted gene, 47230
Tssr84676 9 44579617 to 44579630 13 + TSS region transcription start site region 84676
Tssr89178 9 44581517 to 44581531 14 - TSS region transcription start site region 89178
Tssr84677 9 44581653 to 44581678 25 + TSS region transcription start site region 84677
Tssr84678 9 44581688 to 44581708 20 + TSS region transcription start site region 84678
Tssr84679 9 44581714 to 44581726 12 + TSS region transcription start site region 84679
Tssr89179 9 44582464 to 44582470 6 - TSS region transcription start site region 89179
Cpgi21667 9 44582529 to 44582751 222 CpG island CpG island 21667