Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44327881-44381672

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Dpagt1 9 44326017 to 44333606 7589 + protein coding gene dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
Tssr84641 9 44329055 to 44329068 13 + TSS region transcription start site region 84641
Gm48853 9 44332684 to 44334386 1702 - antisense lncRNA gene predicted gene, 48853
Cpgi21651 9 44334403 to 44335892 1489 CpG island CpG island 21651
Tssr84642 9 44334685 to 44334704 19 + TSS region transcription start site region 84642
H2afx 9 44334715 to 44336077 1362 + protein coding gene H2A histone family, member X
Gm44335 9 44334965 to 44335105 140 - miRNA gene predicted gene, 44335
Tssr84643 9 44335192 to 44335220 28 + TSS region transcription start site region 84643
Tssr84644 9 44335239 to 44335266 27 + TSS region transcription start site region 84644
Tssr84645 9 44335289 to 44335372 83 + TSS region transcription start site region 84645
Tssr84646 9 44335595 to 44335609 14 + TSS region transcription start site region 84646
Tssr84647 9 44336292 to 44336296 4 + TSS region transcription start site region 84647
Hmbs 9 44336348 to 44344228 7880 - protein coding gene hydroxymethylbilane synthase
Tssr89142 9 44338272 to 44338281 9 - TSS region transcription start site region 89142
D9Mit25.2 9 44339762 to 44339903 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.2
Adip20 9 44339897 to 44340026 129 QTL adiposity 20
D9Mit25 9 44339897 to 44340026 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25
D9Mit25.1 9 44340035 to 44340206 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.1
Tssr89143 9 44342296 to 44342312 16 - TSS region transcription start site region 89143
Tssr89144 9 44342332 to 44342344 12 - TSS region transcription start site region 89144
Cpgi21652 9 44343750 to 44344314 564 CpG island CpG island 21652
Tssr89145 9 44344120 to 44344132 12 - TSS region transcription start site region 89145
Tssr89146 9 44344159 to 44344203 44 - TSS region transcription start site region 89146
Vps11 9 44347881 to 44361672 13791 - protein coding gene VPS11, CORVET/HOPS core subunit
Cpgi21653 9 44361276 to 44361918 642 CpG island CpG island 21653
Tssr89147 9 44361625 to 44361670 45 - TSS region transcription start site region 89147
Gm22141 9 44363452 to 44363728 276 + unclassified non-coding RNA gene predicted gene, 22141
Gm40516 9 44364580 to 44365266 686 - lncRNA gene predicted gene, 40516
Gm10080 9 44374744 to 44375181 437 - pseudogene predicted gene 10080
Tssr89148 9 44375214 to 44375238 24 - TSS region transcription start site region 89148
9430081H08Rik 9 44378633 to 44379450 817 - unclassified gene RIKEN cDNA 9430081H08 gene
Cpgi21654 9 44378990 to 44380188 1198 CpG island CpG island 21654
Tssr2842 9 44379182 to 44379193 11 - TSS region transcription start site region 2842
Tssr89149 9 44379260 to 44379352 92 - TSS region transcription start site region 89149
Hyou1 9 44379490 to 44392369 12879 + protein coding gene hypoxia up-regulated 1
Tssr84648 9 44379503 to 44379513 10 + TSS region transcription start site region 84648
Tssr84649 9 44379518 to 44379529 11 + TSS region transcription start site region 84649
Tssr84650 9 44379536 to 44379624 88 + TSS region transcription start site region 84650