Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44318791-46219322

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565 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
C2cd2l 9 44309237 to 44320282 11045 - protein coding gene C2 calcium-dependent domain containing 2-like
Cpgi21649 9 44319455 to 44320516 1061 CpG island CpG island 21649
Tssr89140 9 44320229 to 44320290 61 - TSS region transcription start site region 89140
Tssr89141 9 44320361 to 44320380 19 - TSS region transcription start site region 89141
Dpagt1 9 44326017 to 44333606 7589 + protein coding gene dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
Cpgi21650 9 44326386 to 44327312 926 CpG island CpG island 21650
Tssr84632 9 44326532 to 44326576 44 + TSS region transcription start site region 84632
Tssr84633 9 44326804 to 44326896 92 + TSS region transcription start site region 84633
Tssr84634 9 44326988 to 44326999 11 + TSS region transcription start site region 84634
Tssr84635 9 44327027 to 44327038 11 + TSS region transcription start site region 84635
Tssr84636 9 44327041 to 44327058 17 + TSS region transcription start site region 84636
Tssr84637 9 44327524 to 44327540 16 + TSS region transcription start site region 84637
Tssr84638 9 44327544 to 44327560 16 + TSS region transcription start site region 84638
Tssr84639 9 44327576 to 44327603 27 + TSS region transcription start site region 84639
Tssr84640 9 44327606 to 44327621 15 + TSS region transcription start site region 84640
Tssr84641 9 44329055 to 44329068 13 + TSS region transcription start site region 84641
Gm48853 9 44332684 to 44334386 1702 - antisense lncRNA gene predicted gene, 48853
Cpgi21651 9 44334403 to 44335892 1489 CpG island CpG island 21651
Tssr84642 9 44334685 to 44334704 19 + TSS region transcription start site region 84642
H2afx 9 44334715 to 44336077 1362 + protein coding gene H2A histone family, member X
Gm44335 9 44334965 to 44335105 140 - miRNA gene predicted gene, 44335
Tssr84643 9 44335192 to 44335220 28 + TSS region transcription start site region 84643
Tssr84644 9 44335239 to 44335266 27 + TSS region transcription start site region 84644
Tssr84645 9 44335289 to 44335372 83 + TSS region transcription start site region 84645
Tssr84646 9 44335595 to 44335609 14 + TSS region transcription start site region 84646
Tssr84647 9 44336292 to 44336296 4 + TSS region transcription start site region 84647
Hmbs 9 44336348 to 44344228 7880 - protein coding gene hydroxymethylbilane synthase
Tssr89142 9 44338272 to 44338281 9 - TSS region transcription start site region 89142
D9Mit25.2 9 44339762 to 44339903 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.2
D9Mit25 9 44339897 to 44340026 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25
Adip20 9 44339897 to 44340026 129 QTL adiposity 20
D9Mit25.1 9 44340035 to 44340206 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.1
Tssr89143 9 44342296 to 44342312 16 - TSS region transcription start site region 89143
Tssr89144 9 44342332 to 44342344 12 - TSS region transcription start site region 89144
Cpgi21652 9 44343750 to 44344314 564 CpG island CpG island 21652
Tssr89145 9 44344120 to 44344132 12 - TSS region transcription start site region 89145
Tssr89146 9 44344159 to 44344203 44 - TSS region transcription start site region 89146
Vps11 9 44347881 to 44361672 13791 - protein coding gene VPS11, CORVET/HOPS core subunit
Cpgi21653 9 44361276 to 44361918 642 CpG island CpG island 21653
Tssr89147 9 44361625 to 44361670 45 - TSS region transcription start site region 89147
Gm22141 9 44363452 to 44363728 276 + unclassified non-coding RNA gene predicted gene, 22141
Gm40516 9 44364580 to 44365266 686 - lncRNA gene predicted gene, 40516
Gm10080 9 44374744 to 44375181 437 - pseudogene predicted gene 10080
Tssr89148 9 44375214 to 44375238 24 - TSS region transcription start site region 89148
9430081H08Rik 9 44378633 to 44379450 817 - unclassified gene RIKEN cDNA 9430081H08 gene
Cpgi21654 9 44378990 to 44380188 1198 CpG island CpG island 21654
Tssr2842 9 44379182 to 44379193 11 - TSS region transcription start site region 2842
Tssr89149 9 44379260 to 44379352 92 - TSS region transcription start site region 89149
Hyou1 9 44379490 to 44392369 12879 + protein coding gene hypoxia up-regulated 1
Tssr84648 9 44379503 to 44379513 10 + TSS region transcription start site region 84648
Tssr84649 9 44379518 to 44379529 11 + TSS region transcription start site region 84649
Tssr84650 9 44379536 to 44379624 88 + TSS region transcription start site region 84650
Tssr84651 9 44392201 to 44392205 4 + TSS region transcription start site region 84651
Gm26306 9 44395797 to 44395915 118 - snoRNA gene predicted gene, 26306
Cpgi21655 9 44396797 to 44397593 796 CpG island CpG island 21655
Slc37a4 9 44396857 to 44402968 6111 + protein coding gene solute carrier family 37 (glucose-6-phosphate transporter), member 4
Tssr84652 9 44396929 to 44396955 26 + TSS region transcription start site region 84652
Tssr84653 9 44397058 to 44397128 70 + TSS region transcription start site region 84653
Tssr84654 9 44397145 to 44397154 9 + TSS region transcription start site region 84654
Tssr84655 9 44397338 to 44397396 58 + TSS region transcription start site region 84655
Tssr84656 9 44398344 to 44398361 17 + TSS region transcription start site region 84656
Tssr84657 9 44398367 to 44398394 27 + TSS region transcription start site region 84657
Tssr84658 9 44398409 to 44398423 14 + TSS region transcription start site region 84658
Tssr84659 9 44398428 to 44398435 7 + TSS region transcription start site region 84659
Mir7085 9 44400423 to 44400488 65 + miRNA gene microRNA 7085
Tssr84660 9 44400523 to 44400535 12 + TSS region transcription start site region 84660
Tssr84661 9 44402486 to 44402494 8 + TSS region transcription start site region 84661
Trappc4 9 44403755 to 44407548 3793 - protein coding gene trafficking protein particle complex 4
Cpgi21656 9 44406760 to 44407985 1225 CpG island CpG island 21656
Tssr89150 9 44406962 to 44407013 51 - TSS region transcription start site region 89150
Tssr89151 9 44407014 to 44407029 15 - TSS region transcription start site region 89151
Tssr89152 9 44407037 to 44407076 39 - TSS region transcription start site region 89152
Tssr89153 9 44407081 to 44407111 30 - TSS region transcription start site region 89153
Tssr84662 9 44407090 to 44407161 71 + TSS region transcription start site region 84662
Tssr84663 9 44407163 to 44407185 22 + TSS region transcription start site region 84663
Tssr89154 9 44407301 to 44407343 42 - TSS region transcription start site region 89154
Tssr89155 9 44407344 to 44407372 28 - TSS region transcription start site region 89155
Tssr89156 9 44407526 to 44407551 25 - TSS region transcription start site region 89156
Tssr84664 9 44407629 to 44407683 54 + TSS region transcription start site region 84664
Rps25 9 44407714 to 44410406 2692 + protein coding gene ribosomal protein S25
Ccdc84 9 44410159 to 44418081 7922 - protein coding gene coiled-coil domain containing 84
Cpgi21657 9 44417574 to 44418382 808 CpG island CpG island 21657
Tssr89157 9 44417983 to 44418026 43 - TSS region transcription start site region 89157
Tssr89158 9 44418030 to 44418056 26 - TSS region transcription start site region 89158
Tssr84665 9 44419325 to 44419337 12 + TSS region transcription start site region 84665
Gm47186 9 44419938 to 44423391 3453 - lincRNA gene predicted gene, 47186
Tssr89159 9 44432928 to 44432934 6 - TSS region transcription start site region 89159
Foxr1 9 44434234 to 44440868 6634 - protein coding gene forkhead box R1
Cpgi21658 9 44440526 to 44441185 659 CpG island CpG island 21658
Tssr89160 9 44441191 to 44441230 39 - TSS region transcription start site region 89160
Upk2 9 44452715 to 44454767 2052 - protein coding gene uroplakin 2
Tssr89161 9 44454715 to 44454726 11 - TSS region transcription start site region 89161
Tssr89162 9 44454730 to 44454742 12 - TSS region transcription start site region 89162
Tssr89163 9 44454757 to 44454773 16 - TSS region transcription start site region 89163
Gm9830 9 44464243 to 44464599 356 + pseudogene predicted gene 9830
C030014I23Rik 9 44467465 to 44478011 10546 + lincRNA gene RIKEN cDNA C030014I23 gene
Gm22540 9 44476416 to 44476532 116 - snRNA gene predicted gene, 22540
Gm47204 9 44477928 to 44479759 1831 - lincRNA gene predicted gene, 47204
Cpgi21659 9 44478440 to 44478734 294 CpG island CpG island 21659
Cpgi21660 9 44479156 to 44479493 337 CpG island CpG island 21660
Tssr89164 9 44479724 to 44479743 19 - TSS region transcription start site region 89164
Tssr89165 9 44479752 to 44479780 28 - TSS region transcription start site region 89165
Cpgi21661 9 44479907 to 44480301 394 CpG island CpG island 21661
Gm47205 9 44481514 to 44483803 2289 - unclassified gene predicted gene, 47205
Cpgi21662 9 44482483 to 44483699 1216 CpG island CpG island 21662
Tssr84666 9 44482531 to 44482552 21 + TSS region transcription start site region 84666
Tssr84667 9 44482740 to 44482779 39 + TSS region transcription start site region 84667
Tssr84668 9 44482783 to 44482815 32 + TSS region transcription start site region 84668
Bcl9l 9 44482825 to 44511896 29071 + protein coding gene B cell CLL/lymphoma 9-like
Tssr84669 9 44483142 to 44483167 25 + TSS region transcription start site region 84669
Tssr84670 9 44483183 to 44483199 16 + TSS region transcription start site region 84670
Tssr84671 9 44486588 to 44486624 36 + TSS region transcription start site region 84671
Tssr84672 9 44487230 to 44487265 35 + TSS region transcription start site region 84672
Cpgi21663 9 44489735 to 44490247 512 CpG island CpG island 21663
Tssr84673 9 44498228 to 44498237 9 + TSS region transcription start site region 84673
Tssr2843 9 44498251 to 44498285 34 + TSS region transcription start site region 2843
Cpgi21664 9 44498385 to 44499338 953 CpG island CpG island 21664
Tssr84674 9 44499126 to 44499159 33 + TSS region transcription start site region 84674
Cpgi21665 9 44510119 to 44510370 251 CpG island CpG island 21665
Tssr89166 9 44510181 to 44510190 9 - TSS region transcription start site region 89166
Cxcr5 9 44511787 to 44526421 14634 - protein coding gene chemokine (C-X-C motif) receptor 5
Cpgi21666 9 44513521 to 44514109 588 CpG island CpG island 21666
Tssr84675 9 44522135 to 44522166 31 + TSS region transcription start site region 84675
Tssr89167 9 44525968 to 44525972 4 - TSS region transcription start site region 89167
Tssr89168 9 44526397 to 44526423 26 - TSS region transcription start site region 89168
Tssr89169 9 44526424 to 44526440 16 - TSS region transcription start site region 89169
Tssr89170 9 44526469 to 44526501 32 - TSS region transcription start site region 89170
Tssr89171 9 44526504 to 44526515 11 - TSS region transcription start site region 89171
Tssr89172 9 44551237 to 44551264 27 - TSS region transcription start site region 89172
Tssr89173 9 44561849 to 44561854 5 - TSS region transcription start site region 89173
Tssr89174 9 44567714 to 44567721 7 - TSS region transcription start site region 89174
Tssr89175 9 44567763 to 44567775 12 - TSS region transcription start site region 89175
Tssr2844 9 44567785 to 44567786 1 - TSS region transcription start site region 2844
Tssr89176 9 44568109 to 44568154 45 - TSS region transcription start site region 89176
Tssr89177 9 44573435 to 44573447 12 - TSS region transcription start site region 89177
Gm47230 9 44579608 to 44584652 5044 + lincRNA gene predicted gene, 47230
Tssr84676 9 44579617 to 44579630 13 + TSS region transcription start site region 84676
Tssr89178 9 44581517 to 44581531 14 - TSS region transcription start site region 89178
Tssr84677 9 44581653 to 44581678 25 + TSS region transcription start site region 84677
Tssr84678 9 44581688 to 44581708 20 + TSS region transcription start site region 84678
Tssr84679 9 44581714 to 44581726 12 + TSS region transcription start site region 84679
Tssr89179 9 44582464 to 44582470 6 - TSS region transcription start site region 89179
Cpgi21667 9 44582529 to 44582751 222 CpG island CpG island 21667
Gm47231 9 44596563 to 44598018 1455 - lincRNA gene predicted gene, 47231
Gm47232 9 44598855 to 44599720 865 - lincRNA gene predicted gene, 47232
Cpgi21668 9 44598922 to 44599102 180 CpG island CpG island 21668
Tssr89180 9 44603468 to 44603478 10 - TSS region transcription start site region 89180
Tssr89181 9 44603494 to 44603515 21 - TSS region transcription start site region 89181
Tssr84680 9 44603694 to 44603719 25 + TSS region transcription start site region 84680
Tssr84681 9 44603776 to 44603790 14 + TSS region transcription start site region 84681
Cpgi21669 9 44603935 to 44605642 1707 CpG island CpG island 21669
Tssr84682 9 44604072 to 44604087 15 + TSS region transcription start site region 84682
Tssr89182 9 44604588 to 44604595 7 - TSS region transcription start site region 89182
Tssr84683 9 44604664 to 44604700 36 + TSS region transcription start site region 84683
Tssr2845 9 44604709 to 44604714 5 + TSS region transcription start site region 2845
Tssr89183 9 44604742 to 44604757 15 - TSS region transcription start site region 89183
Tssr89184 9 44604778 to 44604815 37 - TSS region transcription start site region 89184
Tssr84684 9 44604844 to 44604921 77 + TSS region transcription start site region 84684
Ddx6 9 44604892 to 44640731 35839 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Tssr84685 9 44604933 to 44604950 17 + TSS region transcription start site region 84685
Tssr89185 9 44605344 to 44605371 27 - TSS region transcription start site region 89185
Tssr84686 9 44606942 to 44606947 5 + TSS region transcription start site region 84686
Tssr84687 9 44607492 to 44607498 6 + TSS region transcription start site region 84687
Tssr84688 9 44608535 to 44608544 9 + TSS region transcription start site region 84688
Gm30671 9 44610405 to 44610722 317 - pseudogene predicted gene, 30671
E030022I16Rik 9 44618253 to 44621018 2765 + unclassified non-coding RNA gene RIKEN cDNA E030022I16 gene
Tssr84689 9 44630932 to 44630936 4 + TSS region transcription start site region 84689
Gm47234 9 44634195 to 44635103 908 + unclassified gene predicted gene, 47234
Tssr84690 9 44638713 to 44638720 7 + TSS region transcription start site region 84690
Tssr84691 9 44639148 to 44639158 10 + TSS region transcription start site region 84691
Tssr84692 9 44641352 to 44641355 3 + TSS region transcription start site region 84692
Tssr89186 9 44648837 to 44648886 49 - TSS region transcription start site region 89186
Gm47238 9 44650921 to 44652152 1231 + pseudogene predicted gene, 47238
Gm3953 9 44663928 to 44664716 788 - pseudogene predicted gene 3953
BC049987 9 44670453 to 44672238 1785 - lincRNA gene cDNA sequence BC049987
Tssr89187 9 44672256 to 44672262 6 - TSS region transcription start site region 89187
Tssr84693 9 44673185 to 44673188 3 + TSS region transcription start site region 84693
Tssr84694 9 44673227 to 44673246 19 + TSS region transcription start site region 84694
Treh 9 44673233 to 44686305 13072 + protein coding gene trehalase (brush-border membrane glycoprotein)
Phldb1 9 44686304 to 44735198 48894 - protein coding gene pleckstrin homology like domain, family B, member 1
Cpgi21670 9 44707896 to 44708673 777 CpG island CpG island 21670
Gm47239 9 44713010 to 44713713 703 + unclassified gene predicted gene, 47239
Tssr89188 9 44713196 to 44713218 22 - TSS region transcription start site region 89188
Cpgi21671 9 44715215 to 44716110 895 CpG island CpG island 21671
Tssr89189 9 44718775 to 44718778 3 - TSS region transcription start site region 89189
Tssr84695 9 44720791 to 44720835 44 + TSS region transcription start site region 84695
Cpgi21672 9 44721011 to 44721524 513 CpG island CpG island 21672
Tssr89190 9 44721289 to 44721341 52 - TSS region transcription start site region 89190
Tssr89191 9 44721383 to 44721484 101 - TSS region transcription start site region 89191
Cpgi21673 9 44733539 to 44735270 1731 CpG island CpG island 21673
Tssr84696 9 44733968 to 44733983 15 + TSS region transcription start site region 84696
Tssr89192 9 44734012 to 44734024 12 - TSS region transcription start site region 89192
Tssr89193 9 44734200 to 44734211 11 - TSS region transcription start site region 89193
Tssr89194 9 44735184 to 44735187 3 - TSS region transcription start site region 89194
Tssr89195 9 44735189 to 44735213 24 - TSS region transcription start site region 89195
Tssr89196 9 44735216 to 44735240 24 - TSS region transcription start site region 89196
Gm24166 9 44736813 to 44736947 134 - snoRNA gene predicted gene, 24166
Arcn1 9 44742143 to 44767808 25665 - protein coding gene archain 1