Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44301962-44512013

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Hinfp 9 44292440 to 44305671 13231 - protein coding gene histone H4 transcription factor
Cpgi21648 9 44305221 to 44306074 853 CpG island CpG island 21648
Tssr89139 9 44305595 to 44305688 93 - TSS region transcription start site region 89139
C2cd2l 9 44309237 to 44320282 11045 - protein coding gene C2 calcium-dependent domain containing 2-like
Cpgi21649 9 44319455 to 44320516 1061 CpG island CpG island 21649
Tssr89140 9 44320229 to 44320290 61 - TSS region transcription start site region 89140
Tssr89141 9 44320361 to 44320380 19 - TSS region transcription start site region 89141
Dpagt1 9 44326017 to 44333606 7589 + protein coding gene dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
Cpgi21650 9 44326386 to 44327312 926 CpG island CpG island 21650
Tssr84632 9 44326532 to 44326576 44 + TSS region transcription start site region 84632
Tssr84633 9 44326804 to 44326896 92 + TSS region transcription start site region 84633
Tssr84634 9 44326988 to 44326999 11 + TSS region transcription start site region 84634
Tssr84635 9 44327027 to 44327038 11 + TSS region transcription start site region 84635
Tssr84636 9 44327041 to 44327058 17 + TSS region transcription start site region 84636
Tssr84637 9 44327524 to 44327540 16 + TSS region transcription start site region 84637
Tssr84638 9 44327544 to 44327560 16 + TSS region transcription start site region 84638
Tssr84639 9 44327576 to 44327603 27 + TSS region transcription start site region 84639
Tssr84640 9 44327606 to 44327621 15 + TSS region transcription start site region 84640
Tssr84641 9 44329055 to 44329068 13 + TSS region transcription start site region 84641
Gm48853 9 44332684 to 44334386 1702 - antisense lncRNA gene predicted gene, 48853
Cpgi21651 9 44334403 to 44335892 1489 CpG island CpG island 21651
Tssr84642 9 44334685 to 44334704 19 + TSS region transcription start site region 84642
H2afx 9 44334715 to 44336077 1362 + protein coding gene H2A histone family, member X
Gm44335 9 44334965 to 44335105 140 - miRNA gene predicted gene, 44335
Tssr84643 9 44335192 to 44335220 28 + TSS region transcription start site region 84643
Tssr84644 9 44335239 to 44335266 27 + TSS region transcription start site region 84644
Tssr84645 9 44335289 to 44335372 83 + TSS region transcription start site region 84645
Tssr84646 9 44335595 to 44335609 14 + TSS region transcription start site region 84646
Tssr84647 9 44336292 to 44336296 4 + TSS region transcription start site region 84647
Hmbs 9 44336348 to 44344228 7880 - protein coding gene hydroxymethylbilane synthase
Tssr89142 9 44338272 to 44338281 9 - TSS region transcription start site region 89142
D9Mit25.2 9 44339762 to 44339903 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.2
D9Mit25 9 44339897 to 44340026 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25
Adip20 9 44339897 to 44340026 129 QTL adiposity 20
D9Mit25.1 9 44340035 to 44340206 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.1
Tssr89143 9 44342296 to 44342312 16 - TSS region transcription start site region 89143
Tssr89144 9 44342332 to 44342344 12 - TSS region transcription start site region 89144
Cpgi21652 9 44343750 to 44344314 564 CpG island CpG island 21652
Tssr89145 9 44344120 to 44344132 12 - TSS region transcription start site region 89145
Tssr89146 9 44344159 to 44344203 44 - TSS region transcription start site region 89146
Vps11 9 44347881 to 44361672 13791 - protein coding gene VPS11, CORVET/HOPS core subunit
Cpgi21653 9 44361276 to 44361918 642 CpG island CpG island 21653
Tssr89147 9 44361625 to 44361670 45 - TSS region transcription start site region 89147
Gm22141 9 44363452 to 44363728 276 + unclassified non-coding RNA gene predicted gene, 22141
Gm40516 9 44364580 to 44365266 686 - lncRNA gene predicted gene, 40516
Gm10080 9 44374744 to 44375181 437 - pseudogene predicted gene 10080
Tssr89148 9 44375214 to 44375238 24 - TSS region transcription start site region 89148
9430081H08Rik 9 44378633 to 44379450 817 - unclassified gene RIKEN cDNA 9430081H08 gene
Cpgi21654 9 44378990 to 44380188 1198 CpG island CpG island 21654
Tssr2842 9 44379182 to 44379193 11 - TSS region transcription start site region 2842
Tssr89149 9 44379260 to 44379352 92 - TSS region transcription start site region 89149
Hyou1 9 44379490 to 44392369 12879 + protein coding gene hypoxia up-regulated 1
Tssr84648 9 44379503 to 44379513 10 + TSS region transcription start site region 84648
Tssr84649 9 44379518 to 44379529 11 + TSS region transcription start site region 84649
Tssr84650 9 44379536 to 44379624 88 + TSS region transcription start site region 84650
Tssr84651 9 44392201 to 44392205 4 + TSS region transcription start site region 84651
Gm26306 9 44395797 to 44395915 118 - snoRNA gene predicted gene, 26306
Cpgi21655 9 44396797 to 44397593 796 CpG island CpG island 21655
Slc37a4 9 44396857 to 44402968 6111 + protein coding gene solute carrier family 37 (glucose-6-phosphate transporter), member 4
Tssr84652 9 44396929 to 44396955 26 + TSS region transcription start site region 84652
Tssr84653 9 44397058 to 44397128 70 + TSS region transcription start site region 84653
Tssr84654 9 44397145 to 44397154 9 + TSS region transcription start site region 84654
Tssr84655 9 44397338 to 44397396 58 + TSS region transcription start site region 84655
Tssr84656 9 44398344 to 44398361 17 + TSS region transcription start site region 84656
Tssr84657 9 44398367 to 44398394 27 + TSS region transcription start site region 84657
Tssr84658 9 44398409 to 44398423 14 + TSS region transcription start site region 84658
Tssr84659 9 44398428 to 44398435 7 + TSS region transcription start site region 84659
Mir7085 9 44400423 to 44400488 65 + miRNA gene microRNA 7085
Tssr84660 9 44400523 to 44400535 12 + TSS region transcription start site region 84660
Tssr84661 9 44402486 to 44402494 8 + TSS region transcription start site region 84661
Trappc4 9 44403755 to 44407548 3793 - protein coding gene trafficking protein particle complex 4
Cpgi21656 9 44406760 to 44407985 1225 CpG island CpG island 21656
Tssr89150 9 44406962 to 44407013 51 - TSS region transcription start site region 89150
Tssr89151 9 44407014 to 44407029 15 - TSS region transcription start site region 89151
Tssr89152 9 44407037 to 44407076 39 - TSS region transcription start site region 89152
Tssr89153 9 44407081 to 44407111 30 - TSS region transcription start site region 89153
Tssr84662 9 44407090 to 44407161 71 + TSS region transcription start site region 84662
Tssr84663 9 44407163 to 44407185 22 + TSS region transcription start site region 84663
Tssr89154 9 44407301 to 44407343 42 - TSS region transcription start site region 89154
Tssr89155 9 44407344 to 44407372 28 - TSS region transcription start site region 89155
Tssr89156 9 44407526 to 44407551 25 - TSS region transcription start site region 89156
Tssr84664 9 44407629 to 44407683 54 + TSS region transcription start site region 84664
Rps25 9 44407714 to 44410406 2692 + protein coding gene ribosomal protein S25
Ccdc84 9 44410159 to 44418081 7922 - protein coding gene coiled-coil domain containing 84
Cpgi21657 9 44417574 to 44418382 808 CpG island CpG island 21657
Tssr89157 9 44417983 to 44418026 43 - TSS region transcription start site region 89157
Tssr89158 9 44418030 to 44418056 26 - TSS region transcription start site region 89158
Tssr84665 9 44419325 to 44419337 12 + TSS region transcription start site region 84665
Gm47186 9 44419938 to 44423391 3453 - lincRNA gene predicted gene, 47186
Tssr89159 9 44432928 to 44432934 6 - TSS region transcription start site region 89159
Foxr1 9 44434234 to 44440868 6634 - protein coding gene forkhead box R1
Cpgi21658 9 44440526 to 44441185 659 CpG island CpG island 21658
Tssr89160 9 44441191 to 44441230 39 - TSS region transcription start site region 89160
Upk2 9 44452715 to 44454767 2052 - protein coding gene uroplakin 2
Tssr89161 9 44454715 to 44454726 11 - TSS region transcription start site region 89161
Tssr89162 9 44454730 to 44454742 12 - TSS region transcription start site region 89162
Tssr89163 9 44454757 to 44454773 16 - TSS region transcription start site region 89163
Gm9830 9 44464243 to 44464599 356 + pseudogene predicted gene 9830
C030014I23Rik 9 44467465 to 44478011 10546 + lincRNA gene RIKEN cDNA C030014I23 gene
Gm22540 9 44476416 to 44476532 116 - snRNA gene predicted gene, 22540
Gm47204 9 44477928 to 44479759 1831 - lincRNA gene predicted gene, 47204
Cpgi21659 9 44478440 to 44478734 294 CpG island CpG island 21659
Cpgi21660 9 44479156 to 44479493 337 CpG island CpG island 21660
Tssr89164 9 44479724 to 44479743 19 - TSS region transcription start site region 89164
Tssr89165 9 44479752 to 44479780 28 - TSS region transcription start site region 89165
Cpgi21661 9 44479907 to 44480301 394 CpG island CpG island 21661
Gm47205 9 44481514 to 44483803 2289 - unclassified gene predicted gene, 47205
Cpgi21662 9 44482483 to 44483699 1216 CpG island CpG island 21662
Tssr84666 9 44482531 to 44482552 21 + TSS region transcription start site region 84666
Tssr84667 9 44482740 to 44482779 39 + TSS region transcription start site region 84667
Tssr84668 9 44482783 to 44482815 32 + TSS region transcription start site region 84668
Bcl9l 9 44482825 to 44511896 29071 + protein coding gene B cell CLL/lymphoma 9-like
Tssr84669 9 44483142 to 44483167 25 + TSS region transcription start site region 84669
Tssr84670 9 44483183 to 44483199 16 + TSS region transcription start site region 84670
Tssr84671 9 44486588 to 44486624 36 + TSS region transcription start site region 84671
Tssr84672 9 44487230 to 44487265 35 + TSS region transcription start site region 84672
Cpgi21663 9 44489735 to 44490247 512 CpG island CpG island 21663
Tssr84673 9 44498228 to 44498237 9 + TSS region transcription start site region 84673
Tssr2843 9 44498251 to 44498285 34 + TSS region transcription start site region 2843
Cpgi21664 9 44498385 to 44499338 953 CpG island CpG island 21664
Tssr84674 9 44499126 to 44499159 33 + TSS region transcription start site region 84674
Cpgi21665 9 44510119 to 44510370 251 CpG island CpG island 21665
Tssr89166 9 44510181 to 44510190 9 - TSS region transcription start site region 89166
Cxcr5 9 44511787 to 44526421 14634 - protein coding gene chemokine (C-X-C motif) receptor 5