Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44247158-44328469

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc153 9 44240676 to 44247306 6630 + protein coding gene coiled-coil domain containing 153
Pdzd3 9 44247312 to 44251464 4152 - protein coding gene PDZ domain containing 3
Tssr89128 9 44251465 to 44251491 26 - TSS region transcription start site region 89128
Nlrx1 9 44252717 to 44268599 15882 - protein coding gene NLR family member X1
Tssr84631 9 44255034 to 44255057 23 + TSS region transcription start site region 84631
Gm10686 9 44255047 to 44258293 3246 + unclassified gene predicted gene 10686
Tssr89129 9 44256925 to 44256942 17 - TSS region transcription start site region 89129
Cpgi21645 9 44263913 to 44264241 328 CpG island CpG island 21645
Cpgi21646 9 44267551 to 44268387 836 CpG island CpG island 21646
Tssr89130 9 44268051 to 44268111 60 - TSS region transcription start site region 89130
Tssr89131 9 44268156 to 44268167 11 - TSS region transcription start site region 89131
Tssr89132 9 44268182 to 44268229 47 - TSS region transcription start site region 89132
Tssr2840 9 44268461 to 44268476 15 - TSS region transcription start site region 2840
Abcg4 9 44273188 to 44288615 15427 - protein coding gene ATP binding cassette subfamily G member 4
Tssr2841 9 44275545 to 44275552 7 - TSS region transcription start site region 2841
Tssr89133 9 44279339 to 44279351 12 - TSS region transcription start site region 89133
Cpgi21647 9 44287158 to 44288469 1311 CpG island CpG island 21647
Tssr89134 9 44288041 to 44288079 38 - TSS region transcription start site region 89134
Tssr89135 9 44288131 to 44288153 22 - TSS region transcription start site region 89135
Tssr89136 9 44288312 to 44288323 11 - TSS region transcription start site region 89136
Tssr89137 9 44288332 to 44288409 77 - TSS region transcription start site region 89137
Tssr89138 9 44288535 to 44288601 66 - TSS region transcription start site region 89138
Gm48604 9 44290044 to 44292463 2419 - lincRNA gene predicted gene, 48604
Hinfp 9 44292440 to 44305671 13231 - protein coding gene histone H4 transcription factor
Cpgi21648 9 44305221 to 44306074 853 CpG island CpG island 21648
Tssr89139 9 44305595 to 44305688 93 - TSS region transcription start site region 89139
C2cd2l 9 44309237 to 44320282 11045 - protein coding gene C2 calcium-dependent domain containing 2-like
Cpgi21649 9 44319455 to 44320516 1061 CpG island CpG island 21649
Tssr89140 9 44320229 to 44320290 61 - TSS region transcription start site region 89140
Tssr89141 9 44320361 to 44320380 19 - TSS region transcription start site region 89141
Dpagt1 9 44326017 to 44333606 7589 + protein coding gene dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
Cpgi21650 9 44326386 to 44327312 926 CpG island CpG island 21650
Tssr84632 9 44326532 to 44326576 44 + TSS region transcription start site region 84632
Tssr84633 9 44326804 to 44326896 92 + TSS region transcription start site region 84633
Tssr84634 9 44326988 to 44326999 11 + TSS region transcription start site region 84634
Tssr84635 9 44327027 to 44327038 11 + TSS region transcription start site region 84635
Tssr84636 9 44327041 to 44327058 17 + TSS region transcription start site region 84636
Tssr84637 9 44327524 to 44327540 16 + TSS region transcription start site region 84637
Tssr84638 9 44327544 to 44327560 16 + TSS region transcription start site region 84638
Tssr84639 9 44327576 to 44327603 27 + TSS region transcription start site region 84639
Tssr84640 9 44327606 to 44327621 15 + TSS region transcription start site region 84640