Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:43842065-44362078

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326
Gm30373 9 43960966 to 43974170 13204 - lincRNA gene predicted gene, 30373
Gm10688 9 43978958 to 43979477 519 - lincRNA gene predicted gene 10688
Tssr84577 9 43993982 to 43993993 11 + TSS region transcription start site region 84577
E230034D01Rik 9 43993984 to 44000673 6689 + unclassified non-coding RNA gene RIKEN cDNA E230034D01 gene
Gm47345 9 43996471 to 43998593 2122 - unclassified gene predicted gene, 47345
Gm39323 9 44011735 to 44041059 29324 - lincRNA gene predicted gene, 39323
Cpgi21635 9 44020408 to 44020565 157 CpG island CpG island 21635
Tssr89097 9 44022165 to 44022185 20 - TSS region transcription start site region 89097
Tssr84578 9 44022362 to 44022378 16 + TSS region transcription start site region 84578
Tssr84579 9 44032170 to 44032181 11 + TSS region transcription start site region 84579
Tssr84580 9 44032188 to 44032195 7 + TSS region transcription start site region 84580
Tssr84581 9 44032244 to 44032249 5 + TSS region transcription start site region 84581
Tssr89098 9 44033990 to 44034008 18 - TSS region transcription start site region 89098
Tssr89099 9 44034056 to 44034070 14 - TSS region transcription start site region 89099
Tssr89100 9 44041138 to 44041167 29 - TSS region transcription start site region 89100
Tssr89101 9 44041169 to 44041191 22 - TSS region transcription start site region 89101
Tssr89102 9 44041372 to 44041403 31 - TSS region transcription start site region 89102
Tssr84582 9 44043211 to 44043253 42 + TSS region transcription start site region 84582
Tssr84583 9 44043267 to 44043280 13 + TSS region transcription start site region 84583
Cpgi21636 9 44043328 to 44043968 640 CpG island CpG island 21636
Thy1 9 44043384 to 44048579 5195 + protein coding gene thymus cell antigen 1, theta
Tssr84584 9 44043390 to 44043434 44 + TSS region transcription start site region 84584
Tssr84585 9 44045774 to 44045787 13 + TSS region transcription start site region 84585
Tssr84586 9 44045944 to 44045956 12 + TSS region transcription start site region 84586
Tssr84587 9 44046606 to 44046617 11 + TSS region transcription start site region 84587
Tssr84588 9 44046627 to 44046653 26 + TSS region transcription start site region 84588
Tssr89103 9 44046727 to 44046766 39 - TSS region transcription start site region 89103
Tssr84589 9 44046788 to 44046818 30 + TSS region transcription start site region 84589
Tssr84590 9 44046838 to 44046849 11 + TSS region transcription start site region 84590
Tssr89104 9 44046852 to 44046895 43 - TSS region transcription start site region 89104
Tssr84591 9 44046870 to 44046884 14 + TSS region transcription start site region 84591
Tssr84592 9 44046904 to 44046916 12 + TSS region transcription start site region 84592
Tssr89105 9 44047005 to 44047011 6 - TSS region transcription start site region 89105
Tssr84593 9 44047390 to 44047422 32 + TSS region transcription start site region 84593
Tssr84594 9 44047484 to 44047496 12 + TSS region transcription start site region 84594
Tssr84595 9 44047572 to 44047583 11 + TSS region transcription start site region 84595
Tssr84596 9 44047602 to 44047650 48 + TSS region transcription start site region 84596
Tssr89106 9 44047610 to 44047637 27 - TSS region transcription start site region 89106
Tssr84597 9 44047919 to 44047935 16 + TSS region transcription start site region 84597
Tssr84598 9 44047971 to 44047985 14 + TSS region transcription start site region 84598
Gm49380 9 44066327 to 44113500 47173 - protein coding gene predicted gene, 49380
Gm39325 9 44066766 to 44071468 4702 - antisense lncRNA gene predicted gene, 39325
Cpgi21637 9 44066824 to 44067372 548 CpG island CpG island 21637
Tssr84599 9 44066966 to 44066988 22 + TSS region transcription start site region 84599
Tssr84600 9 44066993 to 44067024 31 + TSS region transcription start site region 84600
Usp2 9 44067021 to 44095627 28606 + protein coding gene ubiquitin specific peptidase 2
Tssr84601 9 44067041 to 44067059 18 + TSS region transcription start site region 84601
Tssr84602 9 44067072 to 44067134 62 + TSS region transcription start site region 84602
Tssr84603 9 44067139 to 44067153 14 + TSS region transcription start site region 84603
Tssr84604 9 44068149 to 44068165 16 + TSS region transcription start site region 84604
Tssr84605 9 44068203 to 44068210 7 + TSS region transcription start site region 84605
Tssr84606 9 44069421 to 44069452 31 + TSS region transcription start site region 84606
Tssr84607 9 44069462 to 44069478 16 + TSS region transcription start site region 84607
Tssr84608 9 44072196 to 44072211 15 + TSS region transcription start site region 84608
Tssr84609 9 44076120 to 44076151 31 + TSS region transcription start site region 84609
D9Mit228 9 44083235 to 44083375 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 228
Cpgi21638 9 44083648 to 44084029 381 CpG island CpG island 21638
Cpgi21639 9 44084445 to 44085621 1176 CpG island CpG island 21639
Tssr84610 9 44084914 to 44084933 19 + TSS region transcription start site region 84610
Tssr84611 9 44084944 to 44084957 13 + TSS region transcription start site region 84611
Tssr84612 9 44085029 to 44085047 18 + TSS region transcription start site region 84612
Tssr84613 9 44086201 to 44086202 1 + TSS region transcription start site region 84613
Tssr84614 9 44086206 to 44086219 13 + TSS region transcription start site region 84614
Tssr84615 9 44089094 to 44089135 41 + TSS region transcription start site region 84615
Tssr84616 9 44093865 to 44093885 20 + TSS region transcription start site region 84616
Gm38444 9 44095812 to 44099113 3301 - lncRNA gene predicted gene, 38444
Tssr84617 9 44101722 to 44101735 13 + TSS region transcription start site region 84617
Mfrp 9 44101770 to 44109187 7417 + protein coding gene membrane frizzled-related protein
Tssr84618 9 44102065 to 44102078 13 + TSS region transcription start site region 84618
Tssr84619 9 44107226 to 44107235 9 + TSS region transcription start site region 84619
C1qtnf5 9 44107245 to 44109187 1942 + protein coding gene C1q and tumor necrosis factor related protein 5
Tssr84620 9 44107268 to 44107279 11 + TSS region transcription start site region 84620
Tssr84621 9 44107286 to 44107355 69 + TSS region transcription start site region 84621
Gm20444 9 44107301 to 44108879 1578 - sense intronic lncRNA gene predicted gene 20444
Tssr84622 9 44107672 to 44107718 46 + TSS region transcription start site region 84622
Tssr84623 9 44107743 to 44107761 18 + TSS region transcription start site region 84623
Cpgi21640 9 44107813 to 44108570 757 CpG island CpG island 21640
Rnf26 9 44110781 to 44113051 2270 - protein coding gene ring finger protein 26
Gm47327 9 44110909 to 44111170 261 + unclassified gene predicted gene, 47327
Gm26737 9 44112923 to 44121960 9037 + antisense lncRNA gene predicted gene, 26737
Cpgi21641 9 44113120 to 44113879 759 CpG island CpG island 21641
Tssr89107 9 44113470 to 44113528 58 - TSS region transcription start site region 89107
Gm10687 9 44125258 to 44134485 9227 - antisense lncRNA gene predicted gene 10687
Cpgi21642 9 44129947 to 44130391 444 CpG island CpG island 21642
Tssr89108 9 44130173 to 44130178 5 - TSS region transcription start site region 89108
Cpgi21643 9 44134165 to 44135558 1393 CpG island CpG island 21643
Tssr84624 9 44134206 to 44134254 48 + TSS region transcription start site region 84624
Tssr89109 9 44134481 to 44134510 29 - TSS region transcription start site region 89109
Tssr89110 9 44134513 to 44134533 20 - TSS region transcription start site region 89110
Mcam 9 44134581 to 44142727 8146 + protein coding gene melanoma cell adhesion molecule
Tssr84625 9 44134653 to 44134670 17 + TSS region transcription start site region 84625
Tssr89111 9 44135185 to 44135210 25 - TSS region transcription start site region 89111
Tssr84626 9 44140590 to 44140609 19 + TSS region transcription start site region 84626
Tssr89112 9 44144527 to 44144548 21 - TSS region transcription start site region 89112
Tssr89113 9 44144713 to 44144733 20 - TSS region transcription start site region 89113
Cbl 9 44145040 to 44234046 89006 - protein coding gene Casitas B-lineage lymphoma
Tssr89114 9 44148243 to 44148278 35 - TSS region transcription start site region 89114
Tssr89115 9 44163420 to 44163430 10 - TSS region transcription start site region 89115
5830462O15Rik 9 44179047 to 44180701 1654 - unclassified gene RIKEN cDNA 5830462O15 gene
Gm47255 9 44180675 to 44181161 486 + pseudogene predicted gene, 47255
Tssr89116 9 44185398 to 44185401 3 - TSS region transcription start site region 89116
D9Ertd334e 9 44191734 to 44191949 215 DNA segment DNA segment, Chr 9, ERATO Doi 334, expressed
Tssr89117 9 44196116 to 44196120 4 - TSS region transcription start site region 89117
Tssr89118 9 44196493 to 44196515 22 - TSS region transcription start site region 89118
Tssr89119 9 44196523 to 44196556 33 - TSS region transcription start site region 89119
Cpgi21644 9 44233331 to 44234497 1166 CpG island CpG island 21644
Tssr89120 9 44233334 to 44233336 2 - TSS region transcription start site region 89120
Tssr89121 9 44233475 to 44233527 52 - TSS region transcription start site region 89121
Tssr89122 9 44233901 to 44233912 11 - TSS region transcription start site region 89122
Tssr89123 9 44233927 to 44233967 40 - TSS region transcription start site region 89123
Tssr89124 9 44233983 to 44234003 20 - TSS region transcription start site region 89124
Tssr89125 9 44234014 to 44234017 3 - TSS region transcription start site region 89125
Tssr89126 9 44234155 to 44234164 9 - TSS region transcription start site region 89126
Tssr84627 9 44234361 to 44234374 13 + TSS region transcription start site region 84627
Tssr89127 9 44236887 to 44236907 20 - TSS region transcription start site region 89127
Tssr84628 9 44240668 to 44240693 25 + TSS region transcription start site region 84628
Ccdc153 9 44240676 to 44247306 6630 + protein coding gene coiled-coil domain containing 153
Tssr84629 9 44240707 to 44240717 10 + TSS region transcription start site region 84629
Tssr84630 9 44240732 to 44240743 11 + TSS region transcription start site region 84630
Pdzd3 9 44247312 to 44251464 4152 - protein coding gene PDZ domain containing 3
Tssr89128 9 44251465 to 44251491 26 - TSS region transcription start site region 89128
Nlrx1 9 44252717 to 44268599 15882 - protein coding gene NLR family member X1
Tssr84631 9 44255034 to 44255057 23 + TSS region transcription start site region 84631
Gm10686 9 44255047 to 44258293 3246 + unclassified gene predicted gene 10686
Tssr89129 9 44256925 to 44256942 17 - TSS region transcription start site region 89129
Cpgi21645 9 44263913 to 44264241 328 CpG island CpG island 21645
Cpgi21646 9 44267551 to 44268387 836 CpG island CpG island 21646
Tssr89130 9 44268051 to 44268111 60 - TSS region transcription start site region 89130
Tssr89131 9 44268156 to 44268167 11 - TSS region transcription start site region 89131
Tssr89132 9 44268182 to 44268229 47 - TSS region transcription start site region 89132
Tssr2840 9 44268461 to 44268476 15 - TSS region transcription start site region 2840
Abcg4 9 44273188 to 44288615 15427 - protein coding gene ATP binding cassette subfamily G member 4
Tssr2841 9 44275545 to 44275552 7 - TSS region transcription start site region 2841
Tssr89133 9 44279339 to 44279351 12 - TSS region transcription start site region 89133
Cpgi21647 9 44287158 to 44288469 1311 CpG island CpG island 21647
Tssr89134 9 44288041 to 44288079 38 - TSS region transcription start site region 89134
Tssr89135 9 44288131 to 44288153 22 - TSS region transcription start site region 89135
Tssr89136 9 44288312 to 44288323 11 - TSS region transcription start site region 89136
Tssr89137 9 44288332 to 44288409 77 - TSS region transcription start site region 89137
Tssr89138 9 44288535 to 44288601 66 - TSS region transcription start site region 89138
Gm48604 9 44290044 to 44292463 2419 - lincRNA gene predicted gene, 48604
Hinfp 9 44292440 to 44305671 13231 - protein coding gene histone H4 transcription factor
Cpgi21648 9 44305221 to 44306074 853 CpG island CpG island 21648
Tssr89139 9 44305595 to 44305688 93 - TSS region transcription start site region 89139
C2cd2l 9 44309237 to 44320282 11045 - protein coding gene C2 calcium-dependent domain containing 2-like
Cpgi21649 9 44319455 to 44320516 1061 CpG island CpG island 21649
Tssr89140 9 44320229 to 44320290 61 - TSS region transcription start site region 89140
Tssr89141 9 44320361 to 44320380 19 - TSS region transcription start site region 89141
Dpagt1 9 44326017 to 44333606 7589 + protein coding gene dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
Cpgi21650 9 44326386 to 44327312 926 CpG island CpG island 21650
Tssr84632 9 44326532 to 44326576 44 + TSS region transcription start site region 84632
Tssr84633 9 44326804 to 44326896 92 + TSS region transcription start site region 84633
Tssr84634 9 44326988 to 44326999 11 + TSS region transcription start site region 84634
Tssr84635 9 44327027 to 44327038 11 + TSS region transcription start site region 84635
Tssr84636 9 44327041 to 44327058 17 + TSS region transcription start site region 84636
Tssr84637 9 44327524 to 44327540 16 + TSS region transcription start site region 84637
Tssr84638 9 44327544 to 44327560 16 + TSS region transcription start site region 84638
Tssr84639 9 44327576 to 44327603 27 + TSS region transcription start site region 84639
Tssr84640 9 44327606 to 44327621 15 + TSS region transcription start site region 84640
Tssr84641 9 44329055 to 44329068 13 + TSS region transcription start site region 84641
Gm48853 9 44332684 to 44334386 1702 - antisense lncRNA gene predicted gene, 48853
Cpgi21651 9 44334403 to 44335892 1489 CpG island CpG island 21651
Tssr84642 9 44334685 to 44334704 19 + TSS region transcription start site region 84642
H2afx 9 44334715 to 44336077 1362 + protein coding gene H2A histone family, member X
Gm44335 9 44334965 to 44335105 140 - miRNA gene predicted gene, 44335
Tssr84643 9 44335192 to 44335220 28 + TSS region transcription start site region 84643
Tssr84644 9 44335239 to 44335266 27 + TSS region transcription start site region 84644
Tssr84645 9 44335289 to 44335372 83 + TSS region transcription start site region 84645
Tssr84646 9 44335595 to 44335609 14 + TSS region transcription start site region 84646
Tssr84647 9 44336292 to 44336296 4 + TSS region transcription start site region 84647
Hmbs 9 44336348 to 44344228 7880 - protein coding gene hydroxymethylbilane synthase
Tssr89142 9 44338272 to 44338281 9 - TSS region transcription start site region 89142
D9Mit25.2 9 44339762 to 44339903 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.2
Adip20 9 44339897 to 44340026 129 QTL adiposity 20
D9Mit25 9 44339897 to 44340026 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25
D9Mit25.1 9 44340035 to 44340206 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.1
Tssr89143 9 44342296 to 44342312 16 - TSS region transcription start site region 89143
Tssr89144 9 44342332 to 44342344 12 - TSS region transcription start site region 89144
Cpgi21652 9 44343750 to 44344314 564 CpG island CpG island 21652
Tssr89145 9 44344120 to 44344132 12 - TSS region transcription start site region 89145
Tssr89146 9 44344159 to 44344203 44 - TSS region transcription start site region 89146
Vps11 9 44347881 to 44361672 13791 - protein coding gene VPS11, CORVET/HOPS core subunit
Cpgi21653 9 44361276 to 44361918 642 CpG island CpG island 21653
Tssr89147 9 44361625 to 44361670 45 - TSS region transcription start site region 89147