Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:43828958-44129477

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm3898 9 43829971 to 43832669 2698 + lincRNA gene predicted gene 3898
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326
Gm30373 9 43960966 to 43974170 13204 - lincRNA gene predicted gene, 30373
Gm10688 9 43978958 to 43979477 519 - lincRNA gene predicted gene 10688
Tssr84577 9 43993982 to 43993993 11 + TSS region transcription start site region 84577
E230034D01Rik 9 43993984 to 44000673 6689 + unclassified non-coding RNA gene RIKEN cDNA E230034D01 gene
Gm47345 9 43996471 to 43998593 2122 - unclassified gene predicted gene, 47345
Gm39323 9 44011735 to 44041059 29324 - lincRNA gene predicted gene, 39323
Cpgi21635 9 44020408 to 44020565 157 CpG island CpG island 21635
Tssr89097 9 44022165 to 44022185 20 - TSS region transcription start site region 89097
Tssr84578 9 44022362 to 44022378 16 + TSS region transcription start site region 84578
Tssr84579 9 44032170 to 44032181 11 + TSS region transcription start site region 84579
Tssr84580 9 44032188 to 44032195 7 + TSS region transcription start site region 84580
Tssr84581 9 44032244 to 44032249 5 + TSS region transcription start site region 84581
Tssr89098 9 44033990 to 44034008 18 - TSS region transcription start site region 89098
Tssr89099 9 44034056 to 44034070 14 - TSS region transcription start site region 89099
Tssr89100 9 44041138 to 44041167 29 - TSS region transcription start site region 89100
Tssr89101 9 44041169 to 44041191 22 - TSS region transcription start site region 89101
Tssr89102 9 44041372 to 44041403 31 - TSS region transcription start site region 89102
Tssr84582 9 44043211 to 44043253 42 + TSS region transcription start site region 84582
Tssr84583 9 44043267 to 44043280 13 + TSS region transcription start site region 84583
Cpgi21636 9 44043328 to 44043968 640 CpG island CpG island 21636
Thy1 9 44043384 to 44048579 5195 + protein coding gene thymus cell antigen 1, theta
Tssr84584 9 44043390 to 44043434 44 + TSS region transcription start site region 84584
Tssr84585 9 44045774 to 44045787 13 + TSS region transcription start site region 84585
Tssr84586 9 44045944 to 44045956 12 + TSS region transcription start site region 84586
Tssr84587 9 44046606 to 44046617 11 + TSS region transcription start site region 84587
Tssr84588 9 44046627 to 44046653 26 + TSS region transcription start site region 84588
Tssr89103 9 44046727 to 44046766 39 - TSS region transcription start site region 89103
Tssr84589 9 44046788 to 44046818 30 + TSS region transcription start site region 84589
Tssr84590 9 44046838 to 44046849 11 + TSS region transcription start site region 84590
Tssr89104 9 44046852 to 44046895 43 - TSS region transcription start site region 89104
Tssr84591 9 44046870 to 44046884 14 + TSS region transcription start site region 84591
Tssr84592 9 44046904 to 44046916 12 + TSS region transcription start site region 84592
Tssr89105 9 44047005 to 44047011 6 - TSS region transcription start site region 89105
Tssr84593 9 44047390 to 44047422 32 + TSS region transcription start site region 84593
Tssr84594 9 44047484 to 44047496 12 + TSS region transcription start site region 84594
Tssr84595 9 44047572 to 44047583 11 + TSS region transcription start site region 84595
Tssr84596 9 44047602 to 44047650 48 + TSS region transcription start site region 84596
Tssr89106 9 44047610 to 44047637 27 - TSS region transcription start site region 89106
Tssr84597 9 44047919 to 44047935 16 + TSS region transcription start site region 84597
Tssr84598 9 44047971 to 44047985 14 + TSS region transcription start site region 84598
Gm49380 9 44066327 to 44113500 47173 - protein coding gene predicted gene, 49380
Gm39325 9 44066766 to 44071468 4702 - antisense lncRNA gene predicted gene, 39325
Cpgi21637 9 44066824 to 44067372 548 CpG island CpG island 21637
Tssr84599 9 44066966 to 44066988 22 + TSS region transcription start site region 84599
Tssr84600 9 44066993 to 44067024 31 + TSS region transcription start site region 84600
Usp2 9 44067021 to 44095627 28606 + protein coding gene ubiquitin specific peptidase 2
Tssr84601 9 44067041 to 44067059 18 + TSS region transcription start site region 84601
Tssr84602 9 44067072 to 44067134 62 + TSS region transcription start site region 84602
Tssr84603 9 44067139 to 44067153 14 + TSS region transcription start site region 84603
Tssr84604 9 44068149 to 44068165 16 + TSS region transcription start site region 84604
Tssr84605 9 44068203 to 44068210 7 + TSS region transcription start site region 84605
Tssr84606 9 44069421 to 44069452 31 + TSS region transcription start site region 84606
Tssr84607 9 44069462 to 44069478 16 + TSS region transcription start site region 84607
Tssr84608 9 44072196 to 44072211 15 + TSS region transcription start site region 84608
Tssr84609 9 44076120 to 44076151 31 + TSS region transcription start site region 84609
D9Mit228 9 44083235 to 44083375 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 228
Cpgi21638 9 44083648 to 44084029 381 CpG island CpG island 21638
Cpgi21639 9 44084445 to 44085621 1176 CpG island CpG island 21639
Tssr84610 9 44084914 to 44084933 19 + TSS region transcription start site region 84610
Tssr84611 9 44084944 to 44084957 13 + TSS region transcription start site region 84611
Tssr84612 9 44085029 to 44085047 18 + TSS region transcription start site region 84612
Tssr84613 9 44086201 to 44086202 1 + TSS region transcription start site region 84613
Tssr84614 9 44086206 to 44086219 13 + TSS region transcription start site region 84614
Tssr84615 9 44089094 to 44089135 41 + TSS region transcription start site region 84615
Tssr84616 9 44093865 to 44093885 20 + TSS region transcription start site region 84616
Gm38444 9 44095812 to 44099113 3301 - lncRNA gene predicted gene, 38444
Tssr84617 9 44101722 to 44101735 13 + TSS region transcription start site region 84617
Mfrp 9 44101770 to 44109187 7417 + protein coding gene membrane frizzled-related protein
Tssr84618 9 44102065 to 44102078 13 + TSS region transcription start site region 84618
Tssr84619 9 44107226 to 44107235 9 + TSS region transcription start site region 84619
C1qtnf5 9 44107245 to 44109187 1942 + protein coding gene C1q and tumor necrosis factor related protein 5
Tssr84620 9 44107268 to 44107279 11 + TSS region transcription start site region 84620
Tssr84621 9 44107286 to 44107355 69 + TSS region transcription start site region 84621
Gm20444 9 44107301 to 44108879 1578 - sense intronic lncRNA gene predicted gene 20444
Tssr84622 9 44107672 to 44107718 46 + TSS region transcription start site region 84622
Tssr84623 9 44107743 to 44107761 18 + TSS region transcription start site region 84623
Cpgi21640 9 44107813 to 44108570 757 CpG island CpG island 21640
Rnf26 9 44110781 to 44113051 2270 - protein coding gene ring finger protein 26
Gm47327 9 44110909 to 44111170 261 + unclassified gene predicted gene, 47327
Gm26737 9 44112923 to 44121960 9037 + antisense lncRNA gene predicted gene, 26737
Cpgi21641 9 44113120 to 44113879 759 CpG island CpG island 21641
Tssr89107 9 44113470 to 44113528 58 - TSS region transcription start site region 89107
Gm10687 9 44125258 to 44134485 9227 - antisense lncRNA gene predicted gene 10687