Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:4356489-6266504

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23992 9 4371269 to 4371335 66 - miRNA gene predicted gene, 23992
Cpgi21335 9 4376105 to 4376722 617 CpG island CpG island 21335
Tssr83629 9 4376533 to 4376600 67 + TSS region transcription start site region 83629
Msantd4 9 4376562 to 4386870 10308 + protein coding gene Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
Gria4 9 4417896 to 4796234 378338 - protein coding gene glutamate receptor, ionotropic, AMPA4 (alpha 4)
Gm23811 9 4455940 to 4456023 83 - miRNA gene predicted gene, 23811
Tssr88037 9 4472210 to 4472228 18 - TSS region transcription start site region 88037
Tssr88038 9 4507961 to 4507965 4 - TSS region transcription start site region 88038
Gm46101 9 4513388 to 4532927 19539 + lncRNA gene predicted gene, 46101
Tssr88039 9 4635267 to 4635271 4 - TSS region transcription start site region 88039
Tssr88040 9 4765243 to 4765247 4 - TSS region transcription start site region 88040
Cpgi21336 9 4795545 to 4796457 912 CpG island CpG island 21336
Tssr88041 9 4795561 to 4795644 83 - TSS region transcription start site region 88041
Tssr88042 9 4795914 to 4795928 14 - TSS region transcription start site region 88042
Tssr88043 9 4795951 to 4795964 13 - TSS region transcription start site region 88043
Tssr88044 9 4795969 to 4795987 18 - TSS region transcription start site region 88044
Tssr88045 9 4796022 to 4796033 11 - TSS region transcription start site region 88045
Tssr88046 9 4796034 to 4796066 32 - TSS region transcription start site region 88046
Tssr88047 9 4796070 to 4796081 11 - TSS region transcription start site region 88047
Tssr88048 9 4796141 to 4796159 18 - TSS region transcription start site region 88048
Tssr88049 9 4796160 to 4796195 35 - TSS region transcription start site region 88049
Tssr88050 9 4796196 to 4796216 20 - TSS region transcription start site region 88050
Tssr88051 9 4796218 to 4796267 49 - TSS region transcription start site region 88051
Gm46100 9 4796337 to 4800157 3820 + lncRNA gene predicted gene, 46100
Cpgi21337 9 4977605 to 4977809 204 CpG island CpG island 21337
Gm7390 9 4977959 to 4979174 1215 + pseudogene predicted gene 7390
Gm24896 9 5111399 to 5111533 134 + snoRNA gene predicted gene, 24896
Gm40508 9 5127223 to 5155287 28064 + lncRNA gene predicted gene, 40508
Gm31429 9 5157038 to 5166906 9868 + lncRNA gene predicted gene, 31429
Gm31492 9 5159386 to 5171522 12136 - lncRNA gene predicted gene, 31492
Tssr83630 9 5297999 to 5298001 2 + TSS region transcription start site region 83630
Casp1 9 5298517 to 5307265 8748 + protein coding gene caspase 1
Tssr83631 9 5298669 to 5298694 25 + TSS region transcription start site region 83631
Tssr83632 9 5298767 to 5298781 14 + TSS region transcription start site region 83632
Tssr83633 9 5299174 to 5299216 42 + TSS region transcription start site region 83633
Tssr83634 9 5299245 to 5299262 17 + TSS region transcription start site region 83634
Tssr83635 9 5299267 to 5299283 16 + TSS region transcription start site region 83635
Tssr83636 9 5299290 to 5299307 17 + TSS region transcription start site region 83636
Tssr83637 9 5299402 to 5299415 13 + TSS region transcription start site region 83637
Tssr83638 9 5299433 to 5299445 12 + TSS region transcription start site region 83638
Tssr83639 9 5299476 to 5299501 25 + TSS region transcription start site region 83639
Tssr83640 9 5301144 to 5301172 28 + TSS region transcription start site region 83640
Tssr83641 9 5303073 to 5303100 27 + TSS region transcription start site region 83641
Tssr83642 9 5303550 to 5303563 13 + TSS region transcription start site region 83642
Tssr83643 9 5303631 to 5303653 22 + TSS region transcription start site region 83643
Tssr83644 9 5304322 to 5304336 14 + TSS region transcription start site region 83644
Tssr83645 9 5306141 to 5306161 20 + TSS region transcription start site region 83645
Casp4 9 5308828 to 5336783 27955 + protein coding gene caspase 4, apoptosis-related cysteine peptidase
Tssr83646 9 5308842 to 5308873 31 + TSS region transcription start site region 83646
Tssr83647 9 5309658 to 5309679 21 + TSS region transcription start site region 83647
Tssr83648 9 5310306 to 5310313 7 + TSS region transcription start site region 83648
Tssr88052 9 5311426 to 5311447 21 - TSS region transcription start site region 88052
Tssr88053 9 5311471 to 5311479 8 - TSS region transcription start site region 88053
Tssr88054 9 5311489 to 5311504 15 - TSS region transcription start site region 88054
Tssr83649 9 5311985 to 5311998 13 + TSS region transcription start site region 83649
Tssr83650 9 5312159 to 5312172 13 + TSS region transcription start site region 83650
Tssr83651 9 5312856 to 5312867 11 + TSS region transcription start site region 83651
Tssr83652 9 5312869 to 5312880 11 + TSS region transcription start site region 83652
Tssr83653 9 5312883 to 5312898 15 + TSS region transcription start site region 83653
Tssr83654 9 5312912 to 5312924 12 + TSS region transcription start site region 83654
Tssr83655 9 5321297 to 5321311 14 + TSS region transcription start site region 83655
Tssr83656 9 5323709 to 5323723 14 + TSS region transcription start site region 83656
Tssr83657 9 5323793 to 5323806 13 + TSS region transcription start site region 83657
Tssr83658 9 5327222 to 5327238 16 + TSS region transcription start site region 83658
Tssr83659 9 5327278 to 5327295 17 + TSS region transcription start site region 83659
Tssr83660 9 5332819 to 5332833 14 + TSS region transcription start site region 83660
Tssr83661 9 5335408 to 5335424 16 + TSS region transcription start site region 83661
Tssr83662 9 5345414 to 5345435 21 + TSS region transcription start site region 83662
Casp12 9 5345442 to 5373034 27592 + protein coding gene caspase 12
Tssr83663 9 5345450 to 5345505 55 + TSS region transcription start site region 83663
Tssr88055 9 5440779 to 5440784 5 - TSS region transcription start site region 88055
Gm48506 9 5796779 to 5797033 254 + pseudogene predicted gene, 48506
Tssr2756 9 5857243 to 5857248 5 + TSS region transcription start site region 2756
Gm6015 9 5861647 to 5865418 3771 + pseudogene predicted gene 6015
Gm48640 9 5952442 to 5952667 225 - pseudogene predicted gene, 48640
Gm7425 9 6015245 to 6015935 690 + pseudogene predicted gene 7425
Gm9662 9 6070313 to 6074278 3965 + pseudogene predicted gene 9662
Cpgi21338 9 6168400 to 6168913 513 CpG island CpG island 21338
Tssr83664 9 6168449 to 6168460 11 + TSS region transcription start site region 83664
Tssr83665 9 6168470 to 6168488 18 + TSS region transcription start site region 83665
Tssr83666 9 6168553 to 6168567 14 + TSS region transcription start site region 83666
Tssr83667 9 6168570 to 6168595 25 + TSS region transcription start site region 83667
Pdgfd 9 6168584 to 6378850 210266 + protein coding gene platelet-derived growth factor, D polypeptide
Tssr83668 9 6168601 to 6168617 16 + TSS region transcription start site region 83668
Tssr83669 9 6168638 to 6168671 33 + TSS region transcription start site region 83669
Tssr2757 9 6168678 to 6168694 16 + TSS region transcription start site region 2757
Tssr83670 9 6193590 to 6193595 5 + TSS region transcription start site region 83670
Tssr83671 9 6238030 to 6238038 8 + TSS region transcription start site region 83671
D9Mit186 9 6256738 to 6256885 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 186
Ddi1 9 6265028 to 6266547 1519 - protein coding gene DNA-damage inducible 1