Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:43150029-45020047

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516 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
Pou2f3 9 43123927 to 43205755 81828 - protein coding gene POU domain, class 2, transcription factor 3
Tssr89085 9 43171428 to 43171431 3 - TSS region transcription start site region 89085
Tssr89086 9 43200227 to 43200236 9 - TSS region transcription start site region 89086
Tssr89087 9 43200254 to 43200264 10 - TSS region transcription start site region 89087
Cpgi21626 9 43205398 to 43206244 846 CpG island CpG island 21626
Tssr89088 9 43205834 to 43205885 51 - TSS region transcription start site region 89088
Rpl26-ps6 9 43217122 to 43217555 433 + pseudogene ribosomal protein L26, pseudogene 6
Oaf 9 43221278 to 43239816 18538 - protein coding gene out at first homolog
Tssr89089 9 43225084 to 43225108 24 - TSS region transcription start site region 89089
Cpgi21627 9 43238951 to 43240178 1227 CpG island CpG island 21627
Tssr89090 9 43239795 to 43239810 15 - TSS region transcription start site region 89090
Tssr89091 9 43239817 to 43239842 25 - TSS region transcription start site region 89091
Tssr89092 9 43239883 to 43239892 9 - TSS region transcription start site region 89092
Tssr89093 9 43239946 to 43239955 9 - TSS region transcription start site region 89093
Tssr89094 9 43240376 to 43240391 15 - TSS region transcription start site region 89094
D630033O11Rik 9 43243599 to 43280076 36477 + lincRNA gene RIKEN cDNA D630033O11 gene
Tssr84550 9 43257403 to 43257411 8 + TSS region transcription start site region 84550
Tssr84551 9 43265409 to 43265418 9 + TSS region transcription start site region 84551
Cpgi21628 9 43270542 to 43271094 552 CpG island CpG island 21628
Cpgi21629 9 43286930 to 43287169 239 CpG island CpG island 21629
Tssr84552 9 43303214 to 43303225 11 + TSS region transcription start site region 84552
Tssr84553 9 43303231 to 43303240 9 + TSS region transcription start site region 84553
Tssr84554 9 43303253 to 43303268 15 + TSS region transcription start site region 84554
Tssr84555 9 43303278 to 43303289 11 + TSS region transcription start site region 84555
Tssr84556 9 43307569 to 43307581 12 + TSS region transcription start site region 84556
Tssr84557 9 43307664 to 43307678 14 + TSS region transcription start site region 84557
Tssr84558 9 43309750 to 43309761 11 + TSS region transcription start site region 84558
Tssr84559 9 43309885 to 43309928 43 + TSS region transcription start site region 84559
Tssr84560 9 43310787 to 43310806 19 + TSS region transcription start site region 84560
Tssr84561 9 43310807 to 43310818 11 + TSS region transcription start site region 84561
Trim29 9 43310848 to 43336115 25267 + protein coding gene tripartite motif-containing 29
Tssr84562 9 43311106 to 43311128 22 + TSS region transcription start site region 84562
Tssr84563 9 43311148 to 43311159 11 + TSS region transcription start site region 84563
Cpgi21630 9 43311252 to 43311567 315 CpG island CpG island 21630
Tssr84564 9 43320516 to 43320536 20 + TSS region transcription start site region 84564
Gm36799 9 43357593 to 43378406 20813 + lincRNA gene predicted gene, 36799
D9Mit190 9 43433053 to 43433197 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 190
Gm47475 9 43438965 to 43444438 5473 - lincRNA gene predicted gene, 47475
D9Mit329 9 43450360 to 43450476 116 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 329
Gm28215 9 43469422 to 43470317 895 + lincRNA gene predicted gene 28215
Gm36855 9 43506551 to 43521004 14453 - lincRNA gene predicted gene, 36855
Tssr89095 9 43521000 to 43521033 33 - TSS region transcription start site region 89095
Gm29909 9 43608184 to 43620810 12626 + lincRNA gene predicted gene, 29909
Gm29961 9 43642082 to 43645157 3075 - lincRNA gene predicted gene, 29961
D9Mit189 9 43658214 to 43658349 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 189
Gm5364 9 43683053 to 43683941 888 + pseudogene predicted gene 5364
Gm30015 9 43716841 to 43737126 20285 - lncRNA gene predicted gene, 30015
Gm47542 9 43734114 to 43736436 2322 - unclassified gene predicted gene, 47542
Tssr89096 9 43736965 to 43736992 27 - TSS region transcription start site region 89096
A030010E16Rik 9 43738859 to 43760228 21369 - lncRNA gene RIKEN cDNA A030010E16 gene
Cpgi21631 9 43743137 to 43745641 2504 CpG island CpG island 21631
Tssr84565 9 43743689 to 43743712 23 + TSS region transcription start site region 84565
Tssr84566 9 43743721 to 43743758 37 + TSS region transcription start site region 84566
Tssr84567 9 43743946 to 43743968 22 + TSS region transcription start site region 84567
Tssr84568 9 43743974 to 43744019 45 + TSS region transcription start site region 84568
Tssr84569 9 43744026 to 43744036 10 + TSS region transcription start site region 84569
Tssr84570 9 43744399 to 43744437 38 + TSS region transcription start site region 84570
Nectin1 9 43744576 to 43807461 62885 + protein coding gene nectin cell adhesion molecule 1
Gm46108 9 43773672 to 43787226 13554 - lncRNA gene predicted gene, 46108
Tssr84571 9 43794143 to 43794157 14 + TSS region transcription start site region 84571
Tssr84572 9 43796253 to 43796264 11 + TSS region transcription start site region 84572
Cpgi21632 9 43803431 to 43803909 478 CpG island CpG island 21632
Tssr84573 9 43804132 to 43804154 22 + TSS region transcription start site region 84573
Tssr84574 9 43804201 to 43804212 11 + TSS region transcription start site region 84574
Tssr84575 9 43804679 to 43804693 14 + TSS region transcription start site region 84575
D9Mit1007 9 43809795 to 43809937 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1007
Gm3898 9 43829971 to 43832669 2698 + lincRNA gene predicted gene 3898
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326
Gm30373 9 43960966 to 43974170 13204 - lincRNA gene predicted gene, 30373
Gm10688 9 43978958 to 43979477 519 - lincRNA gene predicted gene 10688
Tssr84577 9 43993982 to 43993993 11 + TSS region transcription start site region 84577
E230034D01Rik 9 43993984 to 44000673 6689 + unclassified non-coding RNA gene RIKEN cDNA E230034D01 gene
Gm47345 9 43996471 to 43998593 2122 - unclassified gene predicted gene, 47345
Gm39323 9 44011735 to 44041059 29324 - lincRNA gene predicted gene, 39323
Cpgi21635 9 44020408 to 44020565 157 CpG island CpG island 21635
Tssr89097 9 44022165 to 44022185 20 - TSS region transcription start site region 89097
Tssr84578 9 44022362 to 44022378 16 + TSS region transcription start site region 84578
Tssr84579 9 44032170 to 44032181 11 + TSS region transcription start site region 84579
Tssr84580 9 44032188 to 44032195 7 + TSS region transcription start site region 84580
Tssr84581 9 44032244 to 44032249 5 + TSS region transcription start site region 84581
Tssr89098 9 44033990 to 44034008 18 - TSS region transcription start site region 89098
Tssr89099 9 44034056 to 44034070 14 - TSS region transcription start site region 89099
Tssr89100 9 44041138 to 44041167 29 - TSS region transcription start site region 89100
Tssr89101 9 44041169 to 44041191 22 - TSS region transcription start site region 89101
Tssr89102 9 44041372 to 44041403 31 - TSS region transcription start site region 89102
Tssr84582 9 44043211 to 44043253 42 + TSS region transcription start site region 84582
Tssr84583 9 44043267 to 44043280 13 + TSS region transcription start site region 84583
Cpgi21636 9 44043328 to 44043968 640 CpG island CpG island 21636
Thy1 9 44043384 to 44048579 5195 + protein coding gene thymus cell antigen 1, theta
Tssr84584 9 44043390 to 44043434 44 + TSS region transcription start site region 84584
Tssr84585 9 44045774 to 44045787 13 + TSS region transcription start site region 84585
Tssr84586 9 44045944 to 44045956 12 + TSS region transcription start site region 84586
Tssr84587 9 44046606 to 44046617 11 + TSS region transcription start site region 84587
Tssr84588 9 44046627 to 44046653 26 + TSS region transcription start site region 84588
Tssr89103 9 44046727 to 44046766 39 - TSS region transcription start site region 89103
Tssr84589 9 44046788 to 44046818 30 + TSS region transcription start site region 84589
Tssr84590 9 44046838 to 44046849 11 + TSS region transcription start site region 84590
Tssr89104 9 44046852 to 44046895 43 - TSS region transcription start site region 89104
Tssr84591 9 44046870 to 44046884 14 + TSS region transcription start site region 84591
Tssr84592 9 44046904 to 44046916 12 + TSS region transcription start site region 84592
Tssr89105 9 44047005 to 44047011 6 - TSS region transcription start site region 89105
Tssr84593 9 44047390 to 44047422 32 + TSS region transcription start site region 84593
Tssr84594 9 44047484 to 44047496 12 + TSS region transcription start site region 84594
Tssr84595 9 44047572 to 44047583 11 + TSS region transcription start site region 84595
Tssr84596 9 44047602 to 44047650 48 + TSS region transcription start site region 84596
Tssr89106 9 44047610 to 44047637 27 - TSS region transcription start site region 89106
Tssr84597 9 44047919 to 44047935 16 + TSS region transcription start site region 84597
Tssr84598 9 44047971 to 44047985 14 + TSS region transcription start site region 84598
Gm49380 9 44066327 to 44113500 47173 - protein coding gene predicted gene, 49380
Gm39325 9 44066766 to 44071468 4702 - antisense lncRNA gene predicted gene, 39325
Cpgi21637 9 44066824 to 44067372 548 CpG island CpG island 21637
Tssr84599 9 44066966 to 44066988 22 + TSS region transcription start site region 84599
Tssr84600 9 44066993 to 44067024 31 + TSS region transcription start site region 84600
Usp2 9 44067021 to 44095627 28606 + protein coding gene ubiquitin specific peptidase 2
Tssr84601 9 44067041 to 44067059 18 + TSS region transcription start site region 84601
Tssr84602 9 44067072 to 44067134 62 + TSS region transcription start site region 84602
Tssr84603 9 44067139 to 44067153 14 + TSS region transcription start site region 84603
Tssr84604 9 44068149 to 44068165 16 + TSS region transcription start site region 84604
Tssr84605 9 44068203 to 44068210 7 + TSS region transcription start site region 84605
Tssr84606 9 44069421 to 44069452 31 + TSS region transcription start site region 84606
Tssr84607 9 44069462 to 44069478 16 + TSS region transcription start site region 84607
Tssr84608 9 44072196 to 44072211 15 + TSS region transcription start site region 84608
Tssr84609 9 44076120 to 44076151 31 + TSS region transcription start site region 84609
D9Mit228 9 44083235 to 44083375 140 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 228
Cpgi21638 9 44083648 to 44084029 381 CpG island CpG island 21638
Cpgi21639 9 44084445 to 44085621 1176 CpG island CpG island 21639
Tssr84610 9 44084914 to 44084933 19 + TSS region transcription start site region 84610
Tssr84611 9 44084944 to 44084957 13 + TSS region transcription start site region 84611
Tssr84612 9 44085029 to 44085047 18 + TSS region transcription start site region 84612
Tssr84613 9 44086201 to 44086202 1 + TSS region transcription start site region 84613
Tssr84614 9 44086206 to 44086219 13 + TSS region transcription start site region 84614
Tssr84615 9 44089094 to 44089135 41 + TSS region transcription start site region 84615
Tssr84616 9 44093865 to 44093885 20 + TSS region transcription start site region 84616
Gm38444 9 44095812 to 44099113 3301 - lncRNA gene predicted gene, 38444
Tssr84617 9 44101722 to 44101735 13 + TSS region transcription start site region 84617
Mfrp 9 44101770 to 44109187 7417 + protein coding gene membrane frizzled-related protein
Tssr84618 9 44102065 to 44102078 13 + TSS region transcription start site region 84618
Tssr84619 9 44107226 to 44107235 9 + TSS region transcription start site region 84619
C1qtnf5 9 44107245 to 44109187 1942 + protein coding gene C1q and tumor necrosis factor related protein 5
Tssr84620 9 44107268 to 44107279 11 + TSS region transcription start site region 84620
Tssr84621 9 44107286 to 44107355 69 + TSS region transcription start site region 84621
Gm20444 9 44107301 to 44108879 1578 - sense intronic lncRNA gene predicted gene 20444
Tssr84622 9 44107672 to 44107718 46 + TSS region transcription start site region 84622
Tssr84623 9 44107743 to 44107761 18 + TSS region transcription start site region 84623
Cpgi21640 9 44107813 to 44108570 757 CpG island CpG island 21640
Rnf26 9 44110781 to 44113051 2270 - protein coding gene ring finger protein 26
Gm47327 9 44110909 to 44111170 261 + unclassified gene predicted gene, 47327
Gm26737 9 44112923 to 44121960 9037 + antisense lncRNA gene predicted gene, 26737
Cpgi21641 9 44113120 to 44113879 759 CpG island CpG island 21641
Tssr89107 9 44113470 to 44113528 58 - TSS region transcription start site region 89107
Gm10687 9 44125258 to 44134485 9227 - antisense lncRNA gene predicted gene 10687
Cpgi21642 9 44129947 to 44130391 444 CpG island CpG island 21642
Tssr89108 9 44130173 to 44130178 5 - TSS region transcription start site region 89108
Cpgi21643 9 44134165 to 44135558 1393 CpG island CpG island 21643
Tssr84624 9 44134206 to 44134254 48 + TSS region transcription start site region 84624
Tssr89109 9 44134481 to 44134510 29 - TSS region transcription start site region 89109
Tssr89110 9 44134513 to 44134533 20 - TSS region transcription start site region 89110
Mcam 9 44134581 to 44142727 8146 + protein coding gene melanoma cell adhesion molecule
Tssr84625 9 44134653 to 44134670 17 + TSS region transcription start site region 84625
Tssr89111 9 44135185 to 44135210 25 - TSS region transcription start site region 89111
Tssr84626 9 44140590 to 44140609 19 + TSS region transcription start site region 84626
Tssr89112 9 44144527 to 44144548 21 - TSS region transcription start site region 89112
Tssr89113 9 44144713 to 44144733 20 - TSS region transcription start site region 89113
Cbl 9 44145040 to 44234046 89006 - protein coding gene Casitas B-lineage lymphoma
Tssr89114 9 44148243 to 44148278 35 - TSS region transcription start site region 89114
Tssr89115 9 44163420 to 44163430 10 - TSS region transcription start site region 89115
5830462O15Rik 9 44179047 to 44180701 1654 - unclassified gene RIKEN cDNA 5830462O15 gene
Gm47255 9 44180675 to 44181161 486 + pseudogene predicted gene, 47255
Tssr89116 9 44185398 to 44185401 3 - TSS region transcription start site region 89116
D9Ertd334e 9 44191734 to 44191949 215 DNA segment DNA segment, Chr 9, ERATO Doi 334, expressed
Tssr89117 9 44196116 to 44196120 4 - TSS region transcription start site region 89117
Tssr89118 9 44196493 to 44196515 22 - TSS region transcription start site region 89118
Tssr89119 9 44196523 to 44196556 33 - TSS region transcription start site region 89119
Cpgi21644 9 44233331 to 44234497 1166 CpG island CpG island 21644
Tssr89120 9 44233334 to 44233336 2 - TSS region transcription start site region 89120
Tssr89121 9 44233475 to 44233527 52 - TSS region transcription start site region 89121
Tssr89122 9 44233901 to 44233912 11 - TSS region transcription start site region 89122
Tssr89123 9 44233927 to 44233967 40 - TSS region transcription start site region 89123
Tssr89124 9 44233983 to 44234003 20 - TSS region transcription start site region 89124
Tssr89125 9 44234014 to 44234017 3 - TSS region transcription start site region 89125
Tssr89126 9 44234155 to 44234164 9 - TSS region transcription start site region 89126
Tssr84627 9 44234361 to 44234374 13 + TSS region transcription start site region 84627
Tssr89127 9 44236887 to 44236907 20 - TSS region transcription start site region 89127
Tssr84628 9 44240668 to 44240693 25 + TSS region transcription start site region 84628
Ccdc153 9 44240676 to 44247306 6630 + protein coding gene coiled-coil domain containing 153
Tssr84629 9 44240707 to 44240717 10 + TSS region transcription start site region 84629
Tssr84630 9 44240732 to 44240743 11 + TSS region transcription start site region 84630
Pdzd3 9 44247312 to 44251464 4152 - protein coding gene PDZ domain containing 3