Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:42667593-44068406

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
Grik4 9 42520412 to 42945154 424742 - protein coding gene glutamate receptor, ionotropic, kainate 4
Tssr84549 9 42673968 to 42674011 43 + TSS region transcription start site region 84549
Gm36590 9 42675009 to 42685183 10174 + lncRNA gene predicted gene, 36590
Sluc39d 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39d
Sluc39c 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39c
Sluc39b 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39b
Sluc39a 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39a
D9Mit254 9 42676189 to 42676285 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 254
Tssr89061 9 42770558 to 42770559 1 - TSS region transcription start site region 89061
Tssr2838 9 42776968 to 42777012 44 - TSS region transcription start site region 2838
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
D9Mit140 9 42853436 to 42853570 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 140
Gm27509 9 42862051 to 42862129 78 - miRNA gene predicted gene, 27509
Cpgi21622 9 42897232 to 42898203 971 CpG island CpG island 21622
Cpgi21623 9 42943507 to 42945204 1697 CpG island CpG island 21623
Tssr89062 9 42944479 to 42944510 31 - TSS region transcription start site region 89062
Gm47931 9 42946801 to 42947443 642 + lincRNA gene predicted gene, 47931
Gm36648 9 42947708 to 42949580 1872 + lncRNA gene predicted gene, 36648
Arhgef12 9 42963842 to 43105718 141876 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 12
Gm5831 9 42964872 to 42966080 1208 + pseudogene predicted gene 5831
Tssr89063 9 42966976 to 42966991 15 - TSS region transcription start site region 89063
Tssr89064 9 42968195 to 42968200 5 - TSS region transcription start site region 89064
Tssr89065 9 42985726 to 42985731 5 - TSS region transcription start site region 89065
Tssr89066 9 43051350 to 43051361 11 - TSS region transcription start site region 89066
Tssr89067 9 43064033 to 43064038 5 - TSS region transcription start site region 89067
Tssr89068 9 43071151 to 43071160 9 - TSS region transcription start site region 89068
Tssr89069 9 43071162 to 43071171 9 - TSS region transcription start site region 89069
Tssr89070 9 43071184 to 43071197 13 - TSS region transcription start site region 89070
Tssr89071 9 43071283 to 43071334 51 - TSS region transcription start site region 89071
Tssr89072 9 43071368 to 43071382 14 - TSS region transcription start site region 89072
Tssr89073 9 43104540 to 43104545 5 - TSS region transcription start site region 89073
Cpgi21624 9 43105132 to 43106698 1566 CpG island CpG island 21624
Tssr89074 9 43105775 to 43105793 18 - TSS region transcription start site region 89074
Tssr89075 9 43105822 to 43105874 52 - TSS region transcription start site region 89075
Tssr89076 9 43105954 to 43106026 72 - TSS region transcription start site region 89076
Tssr89077 9 43106041 to 43106096 55 - TSS region transcription start site region 89077
Tssr89078 9 43106155 to 43106168 13 - TSS region transcription start site region 89078
Tssr89079 9 43106180 to 43106196 16 - TSS region transcription start site region 89079
Tssr89080 9 43107018 to 43107023 5 - TSS region transcription start site region 89080
Tssr89081 9 43107102 to 43107109 7 - TSS region transcription start site region 89081
Tssr89082 9 43107137 to 43107142 5 - TSS region transcription start site region 89082
Tmem136 9 43108650 to 43116570 7920 - protein coding gene transmembrane protein 136
Cpgi21625 9 43116083 to 43116724 641 CpG island CpG island 21625
Tssr89083 9 43116514 to 43116572 58 - TSS region transcription start site region 89083
Tssr89084 9 43116668 to 43116678 10 - TSS region transcription start site region 89084
Pou2f3 9 43123927 to 43205755 81828 - protein coding gene POU domain, class 2, transcription factor 3
Tssr2839 9 43142422 to 43142424 2 + TSS region transcription start site region 2839
Tssr89085 9 43171428 to 43171431 3 - TSS region transcription start site region 89085
Tssr89086 9 43200227 to 43200236 9 - TSS region transcription start site region 89086
Tssr89087 9 43200254 to 43200264 10 - TSS region transcription start site region 89087
Cpgi21626 9 43205398 to 43206244 846 CpG island CpG island 21626
Tssr89088 9 43205834 to 43205885 51 - TSS region transcription start site region 89088
Rpl26-ps6 9 43217122 to 43217555 433 + pseudogene ribosomal protein L26, pseudogene 6
Oaf 9 43221278 to 43239816 18538 - protein coding gene out at first homolog
Tssr89089 9 43225084 to 43225108 24 - TSS region transcription start site region 89089
Cpgi21627 9 43238951 to 43240178 1227 CpG island CpG island 21627
Tssr89090 9 43239795 to 43239810 15 - TSS region transcription start site region 89090
Tssr89091 9 43239817 to 43239842 25 - TSS region transcription start site region 89091
Tssr89092 9 43239883 to 43239892 9 - TSS region transcription start site region 89092
Tssr89093 9 43239946 to 43239955 9 - TSS region transcription start site region 89093
Tssr89094 9 43240376 to 43240391 15 - TSS region transcription start site region 89094
D630033O11Rik 9 43243599 to 43280076 36477 + lincRNA gene RIKEN cDNA D630033O11 gene
Tssr84550 9 43257403 to 43257411 8 + TSS region transcription start site region 84550
Tssr84551 9 43265409 to 43265418 9 + TSS region transcription start site region 84551
Cpgi21628 9 43270542 to 43271094 552 CpG island CpG island 21628
Cpgi21629 9 43286930 to 43287169 239 CpG island CpG island 21629
Tssr84552 9 43303214 to 43303225 11 + TSS region transcription start site region 84552
Tssr84553 9 43303231 to 43303240 9 + TSS region transcription start site region 84553
Tssr84554 9 43303253 to 43303268 15 + TSS region transcription start site region 84554
Tssr84555 9 43303278 to 43303289 11 + TSS region transcription start site region 84555
Tssr84556 9 43307569 to 43307581 12 + TSS region transcription start site region 84556
Tssr84557 9 43307664 to 43307678 14 + TSS region transcription start site region 84557
Tssr84558 9 43309750 to 43309761 11 + TSS region transcription start site region 84558
Tssr84559 9 43309885 to 43309928 43 + TSS region transcription start site region 84559
Tssr84560 9 43310787 to 43310806 19 + TSS region transcription start site region 84560
Tssr84561 9 43310807 to 43310818 11 + TSS region transcription start site region 84561
Trim29 9 43310848 to 43336115 25267 + protein coding gene tripartite motif-containing 29
Tssr84562 9 43311106 to 43311128 22 + TSS region transcription start site region 84562
Tssr84563 9 43311148 to 43311159 11 + TSS region transcription start site region 84563
Cpgi21630 9 43311252 to 43311567 315 CpG island CpG island 21630
Tssr84564 9 43320516 to 43320536 20 + TSS region transcription start site region 84564
Gm36799 9 43357593 to 43378406 20813 + lincRNA gene predicted gene, 36799
D9Mit190 9 43433053 to 43433197 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 190
Gm47475 9 43438965 to 43444438 5473 - lincRNA gene predicted gene, 47475
D9Mit329 9 43450360 to 43450476 116 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 329
Gm28215 9 43469422 to 43470317 895 + lincRNA gene predicted gene 28215
Gm36855 9 43506551 to 43521004 14453 - lincRNA gene predicted gene, 36855
Tssr89095 9 43521000 to 43521033 33 - TSS region transcription start site region 89095
Gm29909 9 43608184 to 43620810 12626 + lincRNA gene predicted gene, 29909
Gm29961 9 43642082 to 43645157 3075 - lincRNA gene predicted gene, 29961
D9Mit189 9 43658214 to 43658349 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 189
Gm5364 9 43683053 to 43683941 888 + pseudogene predicted gene 5364
Gm30015 9 43716841 to 43737126 20285 - lncRNA gene predicted gene, 30015
Gm47542 9 43734114 to 43736436 2322 - unclassified gene predicted gene, 47542
Tssr89096 9 43736965 to 43736992 27 - TSS region transcription start site region 89096
A030010E16Rik 9 43738859 to 43760228 21369 - lncRNA gene RIKEN cDNA A030010E16 gene
Cpgi21631 9 43743137 to 43745641 2504 CpG island CpG island 21631
Tssr84565 9 43743689 to 43743712 23 + TSS region transcription start site region 84565
Tssr84566 9 43743721 to 43743758 37 + TSS region transcription start site region 84566
Tssr84567 9 43743946 to 43743968 22 + TSS region transcription start site region 84567
Tssr84568 9 43743974 to 43744019 45 + TSS region transcription start site region 84568
Tssr84569 9 43744026 to 43744036 10 + TSS region transcription start site region 84569
Tssr84570 9 43744399 to 43744437 38 + TSS region transcription start site region 84570
Nectin1 9 43744576 to 43807461 62885 + protein coding gene nectin cell adhesion molecule 1
Gm46108 9 43773672 to 43787226 13554 - lncRNA gene predicted gene, 46108
Tssr84571 9 43794143 to 43794157 14 + TSS region transcription start site region 84571
Tssr84572 9 43796253 to 43796264 11 + TSS region transcription start site region 84572
Cpgi21632 9 43803431 to 43803909 478 CpG island CpG island 21632
Tssr84573 9 43804132 to 43804154 22 + TSS region transcription start site region 84573
Tssr84574 9 43804201 to 43804212 11 + TSS region transcription start site region 84574
Tssr84575 9 43804679 to 43804693 14 + TSS region transcription start site region 84575
D9Mit1007 9 43809795 to 43809937 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1007
Gm3898 9 43829971 to 43832669 2698 + lincRNA gene predicted gene 3898
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326
Gm30373 9 43960966 to 43974170 13204 - lincRNA gene predicted gene, 30373
Gm10688 9 43978958 to 43979477 519 - lincRNA gene predicted gene 10688
Tssr84577 9 43993982 to 43993993 11 + TSS region transcription start site region 84577
E230034D01Rik 9 43993984 to 44000673 6689 + unclassified non-coding RNA gene RIKEN cDNA E230034D01 gene
Gm47345 9 43996471 to 43998593 2122 - unclassified gene predicted gene, 47345
Gm39323 9 44011735 to 44041059 29324 - lincRNA gene predicted gene, 39323
Cpgi21635 9 44020408 to 44020565 157 CpG island CpG island 21635
Tssr89097 9 44022165 to 44022185 20 - TSS region transcription start site region 89097
Tssr84578 9 44022362 to 44022378 16 + TSS region transcription start site region 84578
Tssr84579 9 44032170 to 44032181 11 + TSS region transcription start site region 84579
Tssr84580 9 44032188 to 44032195 7 + TSS region transcription start site region 84580
Tssr84581 9 44032244 to 44032249 5 + TSS region transcription start site region 84581
Tssr89098 9 44033990 to 44034008 18 - TSS region transcription start site region 89098
Tssr89099 9 44034056 to 44034070 14 - TSS region transcription start site region 89099
Tssr89100 9 44041138 to 44041167 29 - TSS region transcription start site region 89100
Tssr89101 9 44041169 to 44041191 22 - TSS region transcription start site region 89101
Tssr89102 9 44041372 to 44041403 31 - TSS region transcription start site region 89102
Tssr84582 9 44043211 to 44043253 42 + TSS region transcription start site region 84582
Tssr84583 9 44043267 to 44043280 13 + TSS region transcription start site region 84583
Cpgi21636 9 44043328 to 44043968 640 CpG island CpG island 21636
Thy1 9 44043384 to 44048579 5195 + protein coding gene thymus cell antigen 1, theta
Tssr84584 9 44043390 to 44043434 44 + TSS region transcription start site region 84584
Tssr84585 9 44045774 to 44045787 13 + TSS region transcription start site region 84585
Tssr84586 9 44045944 to 44045956 12 + TSS region transcription start site region 84586
Tssr84587 9 44046606 to 44046617 11 + TSS region transcription start site region 84587
Tssr84588 9 44046627 to 44046653 26 + TSS region transcription start site region 84588
Tssr89103 9 44046727 to 44046766 39 - TSS region transcription start site region 89103
Tssr84589 9 44046788 to 44046818 30 + TSS region transcription start site region 84589
Tssr84590 9 44046838 to 44046849 11 + TSS region transcription start site region 84590
Tssr89104 9 44046852 to 44046895 43 - TSS region transcription start site region 89104
Tssr84591 9 44046870 to 44046884 14 + TSS region transcription start site region 84591
Tssr84592 9 44046904 to 44046916 12 + TSS region transcription start site region 84592
Tssr89105 9 44047005 to 44047011 6 - TSS region transcription start site region 89105
Tssr84593 9 44047390 to 44047422 32 + TSS region transcription start site region 84593
Tssr84594 9 44047484 to 44047496 12 + TSS region transcription start site region 84594
Tssr84595 9 44047572 to 44047583 11 + TSS region transcription start site region 84595
Tssr84596 9 44047602 to 44047650 48 + TSS region transcription start site region 84596
Tssr89106 9 44047610 to 44047637 27 - TSS region transcription start site region 89106
Tssr84597 9 44047919 to 44047935 16 + TSS region transcription start site region 84597
Tssr84598 9 44047971 to 44047985 14 + TSS region transcription start site region 84598
Gm49380 9 44066327 to 44113500 47173 - protein coding gene predicted gene, 49380
Gm39325 9 44066766 to 44071468 4702 - antisense lncRNA gene predicted gene, 39325
Cpgi21637 9 44066824 to 44067372 548 CpG island CpG island 21637
Tssr84599 9 44066966 to 44066988 22 + TSS region transcription start site region 84599
Tssr84600 9 44066993 to 44067024 31 + TSS region transcription start site region 84600
Usp2 9 44067021 to 44095627 28606 + protein coding gene ubiquitin specific peptidase 2
Tssr84601 9 44067041 to 44067059 18 + TSS region transcription start site region 84601
Tssr84602 9 44067072 to 44067134 62 + TSS region transcription start site region 84602
Tssr84603 9 44067139 to 44067153 14 + TSS region transcription start site region 84603
Tssr84604 9 44068149 to 44068165 16 + TSS region transcription start site region 84604
Tssr84605 9 44068203 to 44068210 7 + TSS region transcription start site region 84605