Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:42420412-43045154

44 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Phdlc1	9	34193323 to 42853570	8660247		QTL	plasma HDL cholesterol 1
Tbcel	9	42412316 to 42472276	59960	-	protein coding gene	tubulin folding cofactor E-like
Tssr89050	9	42428153 to 42428163	10	-	TSS region	transcription start site region 89050
Tssr89051	9	42428181 to 42428197	16	-	TSS region	transcription start site region 89051
Tssr89052	9	42428198 to 42428209	11	-	TSS region	transcription start site region 89052
Tssr89053	9	42439549 to 42439586	37	-	TSS region	transcription start site region 89053
Gm44311	9	42442852 to 42442920	68	+	miRNA gene	predicted gene, 44311
Tssr89054	9	42457586 to 42457591	5	-	TSS region	transcription start site region 89054
Tssr89055	9	42457594 to 42457606	12	-	TSS region	transcription start site region 89055
Tssr89056	9	42461377 to 42461388	11	-	TSS region	transcription start site region 89056
Tssr89057	9	42461392 to 42461407	15	-	TSS region	transcription start site region 89057
Tssr89058	9	42461414 to 42461436	22	-	TSS region	transcription start site region 89058
Tssr89059	9	42463802 to 42463822	20	-	TSS region	transcription start site region 89059
Tssr84547	9	42466015 to 42466053	38	+	TSS region	transcription start site region 84547
Cpgi21620	9	42471869 to 42472443	574		CpG island	CpG island 21620
Tssr89060	9	42472198 to 42472263	65	-	TSS region	transcription start site region 89060
Gm16322	9	42474555 to 42505662	31107	+	antisense lncRNA gene	predicted gene 16322
Grik4	9	42520412 to 42945154	424742	-	protein coding gene	glutamate receptor, ionotropic, kainate 4
Cpgi21621	9	42520531 to 42521220	689		CpG island	CpG island 21621
Gm24420	9	42520773 to 42520831	58	-	unclassified non-coding RNA gene	predicted gene, 24420
Tssr84548	9	42571611 to 42571616	5	+	TSS region	transcription start site region 84548
9530085L02Rik	9	42608857 to 42613066	4209		unclassified non-coding RNA gene	RIKEN cDNA 9530085L02 gene
Tssr84549	9	42673968 to 42674011	43	+	TSS region	transcription start site region 84549
Gm36590	9	42675009 to 42685183	10174	+	lncRNA gene	predicted gene, 36590
Sluc39c	9	42676189 to 42676285	96		QTL	susceptibility to lung cancer 39c
Sluc39d	9	42676189 to 42676285	96		QTL	susceptibility to lung cancer 39d
Sluc39b	9	42676189 to 42676285	96		QTL	susceptibility to lung cancer 39b
Sluc39a	9	42676189 to 42676285	96		QTL	susceptibility to lung cancer 39a
D9Mit254	9	42676189 to 42676285	96		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 254
Tssr89061	9	42770558 to 42770559	1	-	TSS region	transcription start site region 89061
Tssr2838	9	42776968 to 42777012	44	-	TSS region	transcription start site region 2838
Adip20a	9	42779420 to 44142555	1363135		QTL	adiposity 20a
D9Mit140	9	42853436 to 42853570	134		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 140
Gm27509	9	42862051 to 42862129	78	-	miRNA gene	predicted gene, 27509
Cpgi21622	9	42897232 to 42898203	971		CpG island	CpG island 21622
Cpgi21623	9	42943507 to 42945204	1697		CpG island	CpG island 21623
Tssr89062	9	42944479 to 42944510	31	-	TSS region	transcription start site region 89062
Gm47931	9	42946801 to 42947443	642	+	lincRNA gene	predicted gene, 47931
Gm36648	9	42947708 to 42949580	1872	+	lncRNA gene	predicted gene, 36648
Arhgef12	9	42963842 to 43105718	141876	-	protein coding gene	Rho guanine nucleotide exchange factor (GEF) 12
Gm5831	9	42964872 to 42966080	1208	+	pseudogene	predicted gene 5831
Tssr89063	9	42966976 to 42966991	15	-	TSS region	transcription start site region 89063
Tssr89064	9	42968195 to 42968200	5	-	TSS region	transcription start site region 89064
Tssr89065	9	42985726 to 42985731	5	-	TSS region	transcription start site region 89065