Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:42420009-42940183

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
Tbcel 9 42412316 to 42472276 59960 - protein coding gene tubulin folding cofactor E-like
Tssr89050 9 42428153 to 42428163 10 - TSS region transcription start site region 89050
Tssr89051 9 42428181 to 42428197 16 - TSS region transcription start site region 89051
Tssr89052 9 42428198 to 42428209 11 - TSS region transcription start site region 89052
Tssr89053 9 42439549 to 42439586 37 - TSS region transcription start site region 89053
Gm44311 9 42442852 to 42442920 68 + miRNA gene predicted gene, 44311
Tssr89054 9 42457586 to 42457591 5 - TSS region transcription start site region 89054
Tssr89055 9 42457594 to 42457606 12 - TSS region transcription start site region 89055
Tssr89056 9 42461377 to 42461388 11 - TSS region transcription start site region 89056
Tssr89057 9 42461392 to 42461407 15 - TSS region transcription start site region 89057
Tssr89058 9 42461414 to 42461436 22 - TSS region transcription start site region 89058
Tssr89059 9 42463802 to 42463822 20 - TSS region transcription start site region 89059
Tssr84547 9 42466015 to 42466053 38 + TSS region transcription start site region 84547
Cpgi21620 9 42471869 to 42472443 574 CpG island CpG island 21620
Tssr89060 9 42472198 to 42472263 65 - TSS region transcription start site region 89060
Gm16322 9 42474555 to 42505662 31107 + antisense lncRNA gene predicted gene 16322
Grik4 9 42520412 to 42945154 424742 - protein coding gene glutamate receptor, ionotropic, kainate 4
Cpgi21621 9 42520531 to 42521220 689 CpG island CpG island 21621
Gm24420 9 42520773 to 42520831 58 - unclassified non-coding RNA gene predicted gene, 24420
Tssr84548 9 42571611 to 42571616 5 + TSS region transcription start site region 84548
9530085L02Rik 9 42608857 to 42613066 4209 unclassified non-coding RNA gene RIKEN cDNA 9530085L02 gene
Tssr84549 9 42673968 to 42674011 43 + TSS region transcription start site region 84549
Gm36590 9 42675009 to 42685183 10174 + lncRNA gene predicted gene, 36590
D9Mit254 9 42676189 to 42676285 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 254
Sluc39d 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39d
Sluc39c 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39c
Sluc39b 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39b
Sluc39a 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39a
Tssr89061 9 42770558 to 42770559 1 - TSS region transcription start site region 89061
Tssr2838 9 42776968 to 42777012 44 - TSS region transcription start site region 2838
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
D9Mit140 9 42853436 to 42853570 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 140
Gm27509 9 42862051 to 42862129 78 - miRNA gene predicted gene, 27509
Cpgi21622 9 42897232 to 42898203 971 CpG island CpG island 21622