Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:42181976-43751991

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
4930546K05Rik 9 42182238 to 42209231 26993 - lincRNA gene RIKEN cDNA 4930546K05 gene
Gm36390 9 42191901 to 42195243 3342 + lncRNA gene predicted gene, 36390
Gm40515 9 42228668 to 42241628 12960 - lncRNA gene predicted gene, 40515
Sc5d 9 42251595 to 42264256 12661 - protein coding gene sterol-C5-desaturase
Tssr89015 9 42258613 to 42258628 15 - TSS region transcription start site region 89015
Tssr89016 9 42259760 to 42259772 12 - TSS region transcription start site region 89016
Tssr89017 9 42262136 to 42262141 5 - TSS region transcription start site region 89017
Cpgi21617 9 42263654 to 42264643 989 CpG island CpG island 21617
Tssr89018 9 42264204 to 42264219 15 - TSS region transcription start site region 89018
Tssr89019 9 42264226 to 42264282 56 - TSS region transcription start site region 89019
Tssr84545 9 42264471 to 42264479 8 + TSS region transcription start site region 84545
Gm36435 9 42274816 to 42279871 5055 - lincRNA gene predicted gene, 36435
Tssr2836 9 42296822 to 42296831 9 + TSS region transcription start site region 2836
Tssr84546 9 42296848 to 42296857 9 + TSS region transcription start site region 84546
Gm26272 9 42317550 to 42317681 131 - snoRNA gene predicted gene, 26272
D9Mit313 9 42323501 to 42323770 269 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-313
Cpgi21618 9 42324791 to 42325121 330 CpG island CpG island 21618
Tecta 9 42329619 to 42399929 70310 - protein coding gene tectorin alpha
Tssr89020 9 42330976 to 42330998 22 - TSS region transcription start site region 89020
Tssr89021 9 42338953 to 42338970 17 - TSS region transcription start site region 89021
Tssr89022 9 42343874 to 42343875 1 - TSS region transcription start site region 89022
Tssr89023 9 42343883 to 42343893 10 - TSS region transcription start site region 89023
Cpgi21619 9 42347943 to 42348425 482 CpG island CpG island 21619
Gm47629 9 42385862 to 42390886 5024 + antisense lncRNA gene predicted gene, 47629
Tssr89024 9 42394600 to 42394601 1 - TSS region transcription start site region 89024
Tssr89025 9 42398647 to 42398656 9 - TSS region transcription start site region 89025
Tssr89026 9 42398662 to 42398691 29 - TSS region transcription start site region 89026
Tssr89027 9 42398701 to 42398710 9 - TSS region transcription start site region 89027
Tssr89028 9 42399292 to 42399301 9 - TSS region transcription start site region 89028
Tssr89029 9 42399314 to 42399325 11 - TSS region transcription start site region 89029
Tssr89030 9 42399488 to 42399495 7 - TSS region transcription start site region 89030
Tssr2837 9 42399550 to 42399558 8 - TSS region transcription start site region 2837
Tssr89031 9 42399614 to 42399622 8 - TSS region transcription start site region 89031
Tssr89032 9 42399694 to 42399706 12 - TSS region transcription start site region 89032
Tssr89033 9 42399709 to 42399722 13 - TSS region transcription start site region 89033
Tssr89034 9 42399740 to 42399747 7 - TSS region transcription start site region 89034
Tssr89035 9 42399755 to 42399764 9 - TSS region transcription start site region 89035
Tssr89036 9 42399769 to 42399793 24 - TSS region transcription start site region 89036
Tssr89037 9 42399804 to 42399877 73 - TSS region transcription start site region 89037
Tssr89038 9 42399882 to 42399895 13 - TSS region transcription start site region 89038
Tssr89039 9 42399900 to 42399912 12 - TSS region transcription start site region 89039
Tssr89040 9 42399915 to 42399926 11 - TSS region transcription start site region 89040
Tssr89041 9 42399940 to 42399960 20 - TSS region transcription start site region 89041
Tssr89042 9 42400041 to 42400048 7 - TSS region transcription start site region 89042
Tssr89043 9 42400059 to 42400074 15 - TSS region transcription start site region 89043
Tssr89044 9 42400155 to 42400170 15 - TSS region transcription start site region 89044
Tssr89045 9 42401564 to 42401579 15 - TSS region transcription start site region 89045
Tssr89046 9 42401582 to 42401593 11 - TSS region transcription start site region 89046
Tssr89047 9 42401598 to 42401620 22 - TSS region transcription start site region 89047
Tssr89048 9 42401636 to 42401670 34 - TSS region transcription start site region 89048
Tssr89049 9 42401676 to 42401697 21 - TSS region transcription start site region 89049
Tbcel 9 42412316 to 42472276 59960 - protein coding gene tubulin folding cofactor E-like
Tssr89050 9 42428153 to 42428163 10 - TSS region transcription start site region 89050
Tssr89051 9 42428181 to 42428197 16 - TSS region transcription start site region 89051
Tssr89052 9 42428198 to 42428209 11 - TSS region transcription start site region 89052
Tssr89053 9 42439549 to 42439586 37 - TSS region transcription start site region 89053
Gm44311 9 42442852 to 42442920 68 + miRNA gene predicted gene, 44311
Tssr89054 9 42457586 to 42457591 5 - TSS region transcription start site region 89054
Tssr89055 9 42457594 to 42457606 12 - TSS region transcription start site region 89055
Tssr89056 9 42461377 to 42461388 11 - TSS region transcription start site region 89056
Tssr89057 9 42461392 to 42461407 15 - TSS region transcription start site region 89057
Tssr89058 9 42461414 to 42461436 22 - TSS region transcription start site region 89058
Tssr89059 9 42463802 to 42463822 20 - TSS region transcription start site region 89059
Tssr84547 9 42466015 to 42466053 38 + TSS region transcription start site region 84547
Cpgi21620 9 42471869 to 42472443 574 CpG island CpG island 21620
Tssr89060 9 42472198 to 42472263 65 - TSS region transcription start site region 89060
Gm16322 9 42474555 to 42505662 31107 + antisense lncRNA gene predicted gene 16322
Grik4 9 42520412 to 42945154 424742 - protein coding gene glutamate receptor, ionotropic, kainate 4
Cpgi21621 9 42520531 to 42521220 689 CpG island CpG island 21621
Gm24420 9 42520773 to 42520831 58 - unclassified non-coding RNA gene predicted gene, 24420
Tssr84548 9 42571611 to 42571616 5 + TSS region transcription start site region 84548
9530085L02Rik 9 42608857 to 42613066 4209 unclassified non-coding RNA gene RIKEN cDNA 9530085L02 gene
Tssr84549 9 42673968 to 42674011 43 + TSS region transcription start site region 84549
Gm36590 9 42675009 to 42685183 10174 + lncRNA gene predicted gene, 36590
D9Mit254 9 42676189 to 42676285 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 254
Sluc39d 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39d
Sluc39c 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39c
Sluc39b 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39b
Sluc39a 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39a
Tssr89061 9 42770558 to 42770559 1 - TSS region transcription start site region 89061
Tssr2838 9 42776968 to 42777012 44 - TSS region transcription start site region 2838
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
D9Mit140 9 42853436 to 42853570 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 140
Gm27509 9 42862051 to 42862129 78 - miRNA gene predicted gene, 27509
Cpgi21622 9 42897232 to 42898203 971 CpG island CpG island 21622
Cpgi21623 9 42943507 to 42945204 1697 CpG island CpG island 21623
Tssr89062 9 42944479 to 42944510 31 - TSS region transcription start site region 89062
Gm47931 9 42946801 to 42947443 642 + lincRNA gene predicted gene, 47931
Gm36648 9 42947708 to 42949580 1872 + lncRNA gene predicted gene, 36648
Arhgef12 9 42963842 to 43105718 141876 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 12
Gm5831 9 42964872 to 42966080 1208 + pseudogene predicted gene 5831
Tssr89063 9 42966976 to 42966991 15 - TSS region transcription start site region 89063
Tssr89064 9 42968195 to 42968200 5 - TSS region transcription start site region 89064
Tssr89065 9 42985726 to 42985731 5 - TSS region transcription start site region 89065
Tssr89066 9 43051350 to 43051361 11 - TSS region transcription start site region 89066
Tssr89067 9 43064033 to 43064038 5 - TSS region transcription start site region 89067
Tssr89068 9 43071151 to 43071160 9 - TSS region transcription start site region 89068
Tssr89069 9 43071162 to 43071171 9 - TSS region transcription start site region 89069
Tssr89070 9 43071184 to 43071197 13 - TSS region transcription start site region 89070
Tssr89071 9 43071283 to 43071334 51 - TSS region transcription start site region 89071
Tssr89072 9 43071368 to 43071382 14 - TSS region transcription start site region 89072
Tssr89073 9 43104540 to 43104545 5 - TSS region transcription start site region 89073
Cpgi21624 9 43105132 to 43106698 1566 CpG island CpG island 21624
Tssr89074 9 43105775 to 43105793 18 - TSS region transcription start site region 89074
Tssr89075 9 43105822 to 43105874 52 - TSS region transcription start site region 89075
Tssr89076 9 43105954 to 43106026 72 - TSS region transcription start site region 89076
Tssr89077 9 43106041 to 43106096 55 - TSS region transcription start site region 89077
Tssr89078 9 43106155 to 43106168 13 - TSS region transcription start site region 89078
Tssr89079 9 43106180 to 43106196 16 - TSS region transcription start site region 89079
Tssr89080 9 43107018 to 43107023 5 - TSS region transcription start site region 89080
Tssr89081 9 43107102 to 43107109 7 - TSS region transcription start site region 89081
Tssr89082 9 43107137 to 43107142 5 - TSS region transcription start site region 89082
Tmem136 9 43108650 to 43116570 7920 - protein coding gene transmembrane protein 136
Cpgi21625 9 43116083 to 43116724 641 CpG island CpG island 21625
Tssr89083 9 43116514 to 43116572 58 - TSS region transcription start site region 89083
Tssr89084 9 43116668 to 43116678 10 - TSS region transcription start site region 89084
Pou2f3 9 43123927 to 43205755 81828 - protein coding gene POU domain, class 2, transcription factor 3
Tssr2839 9 43142422 to 43142424 2 + TSS region transcription start site region 2839
Tssr89085 9 43171428 to 43171431 3 - TSS region transcription start site region 89085
Tssr89086 9 43200227 to 43200236 9 - TSS region transcription start site region 89086
Tssr89087 9 43200254 to 43200264 10 - TSS region transcription start site region 89087
Cpgi21626 9 43205398 to 43206244 846 CpG island CpG island 21626
Tssr89088 9 43205834 to 43205885 51 - TSS region transcription start site region 89088
Rpl26-ps6 9 43217122 to 43217555 433 + pseudogene ribosomal protein L26, pseudogene 6
Oaf 9 43221278 to 43239816 18538 - protein coding gene out at first homolog
Tssr89089 9 43225084 to 43225108 24 - TSS region transcription start site region 89089
Cpgi21627 9 43238951 to 43240178 1227 CpG island CpG island 21627
Tssr89090 9 43239795 to 43239810 15 - TSS region transcription start site region 89090
Tssr89091 9 43239817 to 43239842 25 - TSS region transcription start site region 89091
Tssr89092 9 43239883 to 43239892 9 - TSS region transcription start site region 89092
Tssr89093 9 43239946 to 43239955 9 - TSS region transcription start site region 89093
Tssr89094 9 43240376 to 43240391 15 - TSS region transcription start site region 89094
D630033O11Rik 9 43243599 to 43280076 36477 + lincRNA gene RIKEN cDNA D630033O11 gene
Tssr84550 9 43257403 to 43257411 8 + TSS region transcription start site region 84550
Tssr84551 9 43265409 to 43265418 9 + TSS region transcription start site region 84551
Cpgi21628 9 43270542 to 43271094 552 CpG island CpG island 21628
Cpgi21629 9 43286930 to 43287169 239 CpG island CpG island 21629
Tssr84552 9 43303214 to 43303225 11 + TSS region transcription start site region 84552
Tssr84553 9 43303231 to 43303240 9 + TSS region transcription start site region 84553
Tssr84554 9 43303253 to 43303268 15 + TSS region transcription start site region 84554
Tssr84555 9 43303278 to 43303289 11 + TSS region transcription start site region 84555
Tssr84556 9 43307569 to 43307581 12 + TSS region transcription start site region 84556
Tssr84557 9 43307664 to 43307678 14 + TSS region transcription start site region 84557
Tssr84558 9 43309750 to 43309761 11 + TSS region transcription start site region 84558
Tssr84559 9 43309885 to 43309928 43 + TSS region transcription start site region 84559
Tssr84560 9 43310787 to 43310806 19 + TSS region transcription start site region 84560
Tssr84561 9 43310807 to 43310818 11 + TSS region transcription start site region 84561
Trim29 9 43310848 to 43336115 25267 + protein coding gene tripartite motif-containing 29
Tssr84562 9 43311106 to 43311128 22 + TSS region transcription start site region 84562
Tssr84563 9 43311148 to 43311159 11 + TSS region transcription start site region 84563
Cpgi21630 9 43311252 to 43311567 315 CpG island CpG island 21630
Tssr84564 9 43320516 to 43320536 20 + TSS region transcription start site region 84564
Gm36799 9 43357593 to 43378406 20813 + lincRNA gene predicted gene, 36799
D9Mit190 9 43433053 to 43433197 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 190
Gm47475 9 43438965 to 43444438 5473 - lincRNA gene predicted gene, 47475
D9Mit329 9 43450360 to 43450476 116 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 329
Gm28215 9 43469422 to 43470317 895 + lincRNA gene predicted gene 28215
Gm36855 9 43506551 to 43521004 14453 - lincRNA gene predicted gene, 36855
Tssr89095 9 43521000 to 43521033 33 - TSS region transcription start site region 89095
Gm29909 9 43608184 to 43620810 12626 + lincRNA gene predicted gene, 29909
Gm29961 9 43642082 to 43645157 3075 - lincRNA gene predicted gene, 29961
D9Mit189 9 43658214 to 43658349 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 189
Gm5364 9 43683053 to 43683941 888 + pseudogene predicted gene 5364
Gm30015 9 43716841 to 43737126 20285 - lncRNA gene predicted gene, 30015
Gm47542 9 43734114 to 43736436 2322 - unclassified gene predicted gene, 47542
Tssr89096 9 43736965 to 43736992 27 - TSS region transcription start site region 89096
A030010E16Rik 9 43738859 to 43760228 21369 - lncRNA gene RIKEN cDNA A030010E16 gene
Cpgi21631 9 43743137 to 43745641 2504 CpG island CpG island 21631
Tssr84565 9 43743689 to 43743712 23 + TSS region transcription start site region 84565
Tssr84566 9 43743721 to 43743758 37 + TSS region transcription start site region 84566
Tssr84567 9 43743946 to 43743968 22 + TSS region transcription start site region 84567
Tssr84568 9 43743974 to 43744019 45 + TSS region transcription start site region 84568
Tssr84569 9 43744026 to 43744036 10 + TSS region transcription start site region 84569
Tssr84570 9 43744399 to 43744437 38 + TSS region transcription start site region 84570
Nectin1 9 43744576 to 43807461 62885 + protein coding gene nectin cell adhesion molecule 1