Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:41588668-42881628

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
3110039I08Rik 9 41376526 to 41615185 238659 + lncRNA gene RIKEN cDNA 3110039I08 gene
Gm49317 9 41474855 to 41655483 180628 + lincRNA gene predicted gene, 49317
Tssr84534 9 41591741 to 41591764 23 + TSS region transcription start site region 84534
Tssr84535 9 41600132 to 41600150 18 + TSS region transcription start site region 84535
Gm48737 9 41618992 to 41621303 2311 + unclassified gene predicted gene, 48737
Gm8707 9 41654285 to 41655474 1189 + pseudogene predicted gene 8707
Gm48784 9 41659164 to 41675054 15890 - lincRNA gene predicted gene, 48784
Gm35835 9 41680147 to 41737398 57251 - lincRNA gene predicted gene, 35835
Tssr88998 9 41687837 to 41687845 8 - TSS region transcription start site region 88998
Gm46143 9 41760332 to 41765145 4813 + lncRNA gene predicted gene, 46143
6720432D03Rik 9 41803159 to 41805683 2524 - lncRNA gene RIKEN cDNA 6720432D03 gene
Gm35940 9 41804553 to 41834517 29964 + lncRNA gene predicted gene, 35940
Gm36032 9 41852138 to 41876283 24145 - lncRNA gene predicted gene, 36032
Tssr2833 9 41876197 to 41876205 8 - TSS region transcription start site region 2833
Tssr88999 9 41876213 to 41876218 5 - TSS region transcription start site region 88999
Gm48814 9 41876319 to 41879401 3082 + bidirectional promoter lncRNA gene predicted gene, 48814
Tssr84536 9 41885232 to 41885237 5 + TSS region transcription start site region 84536
Gm40513 9 41886627 to 41890549 3922 - lincRNA gene predicted gene, 40513
D9Mit328 9 41887849 to 41888030 181 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 328
Cpgi21613 9 41890287 to 41890870 583 CpG island CpG island 21613
Gm36170 9 41890583 to 41892399 1816 + lncRNA gene predicted gene, 36170
Gm40514 9 41906023 to 41910606 4583 - protein coding gene predicted gene, 40514
Gm36227 9 41911949 to 41919313 7364 - lncRNA gene predicted gene, 36227
Tssr89000 9 41934051 to 41934053 2 - TSS region transcription start site region 89000
Cpgi21614 9 41935738 to 41935929 191 CpG island CpG island 21614
Cpgi21615 9 41950633 to 41951475 842 CpG island CpG island 21615
Sorl1 9 41964718 to 42124289 159571 - protein coding gene sortilin-related receptor, LDLR class A repeats-containing
Tssr89001 9 41985633 to 41985647 14 - TSS region transcription start site region 89001
Tssr89002 9 41985789 to 41985799 10 - TSS region transcription start site region 89002
Tssr89003 9 41988239 to 41988269 30 - TSS region transcription start site region 89003
D9Bwg1411e 9 41995328 to 41995596 268 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1411 expressed
Tssr89004 9 42022419 to 42022430 11 - TSS region transcription start site region 89004
Gm16214 9 42022615 to 42034113 11498 + antisense lncRNA gene predicted gene 16214
Tssr89005 9 42033912 to 42033928 16 - TSS region transcription start site region 89005
Tssr89006 9 42069937 to 42069977 40 - TSS region transcription start site region 89006
Tssr84537 9 42076509 to 42076544 35 + TSS region transcription start site region 84537
Tssr84538 9 42095000 to 42095027 27 + TSS region transcription start site region 84538
Tssr89007 9 42097980 to 42097983 3 - TSS region transcription start site region 89007
Tssr89008 9 42098009 to 42098037 28 - TSS region transcription start site region 89008
D9Mit45 9 42117488 to 42117677 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 45
Tssr89009 9 42120326 to 42120369 43 - TSS region transcription start site region 89009
Tssr2834 9 42120429 to 42120469 40 + TSS region transcription start site region 2834
Tssr2835 9 42122536 to 42122574 38 - TSS region transcription start site region 2835
Tssr84539 9 42122703 to 42122713 10 + TSS region transcription start site region 84539
Cpgi21616 9 42123410 to 42124665 1255 CpG island CpG island 21616
Tssr89010 9 42124111 to 42124142 31 - TSS region transcription start site region 89010
Tssr89011 9 42124153 to 42124164 11 - TSS region transcription start site region 89011
Tssr89012 9 42124268 to 42124275 7 - TSS region transcription start site region 89012
Tssr89013 9 42124276 to 42124333 57 - TSS region transcription start site region 89013
Tssr89014 9 42124360 to 42124371 11 - TSS region transcription start site region 89014
Tssr84540 9 42138814 to 42138819 5 + TSS region transcription start site region 84540
Tssr84541 9 42142076 to 42142092 16 + TSS region transcription start site region 84541
Gm39321 9 42142092 to 42145394 3302 + lincRNA gene predicted gene, 39321
Tssr84542 9 42142104 to 42142115 11 + TSS region transcription start site region 84542
Tssr84543 9 42142119 to 42142134 15 + TSS region transcription start site region 84543
Tssr84544 9 42142139 to 42142150 11 + TSS region transcription start site region 84544
4930546K05Rik 9 42182238 to 42209231 26993 - lincRNA gene RIKEN cDNA 4930546K05 gene
Gm36390 9 42191901 to 42195243 3342 + lncRNA gene predicted gene, 36390
Gm40515 9 42228668 to 42241628 12960 - lncRNA gene predicted gene, 40515
Sc5d 9 42251595 to 42264256 12661 - protein coding gene sterol-C5-desaturase
Tssr89015 9 42258613 to 42258628 15 - TSS region transcription start site region 89015
Tssr89016 9 42259760 to 42259772 12 - TSS region transcription start site region 89016
Tssr89017 9 42262136 to 42262141 5 - TSS region transcription start site region 89017
Cpgi21617 9 42263654 to 42264643 989 CpG island CpG island 21617
Tssr89018 9 42264204 to 42264219 15 - TSS region transcription start site region 89018
Tssr89019 9 42264226 to 42264282 56 - TSS region transcription start site region 89019
Tssr84545 9 42264471 to 42264479 8 + TSS region transcription start site region 84545
Gm36435 9 42274816 to 42279871 5055 - lincRNA gene predicted gene, 36435
Tssr2836 9 42296822 to 42296831 9 + TSS region transcription start site region 2836
Tssr84546 9 42296848 to 42296857 9 + TSS region transcription start site region 84546
Gm26272 9 42317550 to 42317681 131 - snoRNA gene predicted gene, 26272
D9Mit313 9 42323501 to 42323770 269 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-313
Cpgi21618 9 42324791 to 42325121 330 CpG island CpG island 21618
Tecta 9 42329619 to 42399929 70310 - protein coding gene tectorin alpha
Tssr89020 9 42330976 to 42330998 22 - TSS region transcription start site region 89020
Tssr89021 9 42338953 to 42338970 17 - TSS region transcription start site region 89021
Tssr89022 9 42343874 to 42343875 1 - TSS region transcription start site region 89022
Tssr89023 9 42343883 to 42343893 10 - TSS region transcription start site region 89023
Cpgi21619 9 42347943 to 42348425 482 CpG island CpG island 21619
Gm47629 9 42385862 to 42390886 5024 + antisense lncRNA gene predicted gene, 47629
Tssr89024 9 42394600 to 42394601 1 - TSS region transcription start site region 89024
Tssr89025 9 42398647 to 42398656 9 - TSS region transcription start site region 89025
Tssr89026 9 42398662 to 42398691 29 - TSS region transcription start site region 89026
Tssr89027 9 42398701 to 42398710 9 - TSS region transcription start site region 89027
Tssr89028 9 42399292 to 42399301 9 - TSS region transcription start site region 89028
Tssr89029 9 42399314 to 42399325 11 - TSS region transcription start site region 89029
Tssr89030 9 42399488 to 42399495 7 - TSS region transcription start site region 89030
Tssr2837 9 42399550 to 42399558 8 - TSS region transcription start site region 2837
Tssr89031 9 42399614 to 42399622 8 - TSS region transcription start site region 89031
Tssr89032 9 42399694 to 42399706 12 - TSS region transcription start site region 89032
Tssr89033 9 42399709 to 42399722 13 - TSS region transcription start site region 89033
Tssr89034 9 42399740 to 42399747 7 - TSS region transcription start site region 89034
Tssr89035 9 42399755 to 42399764 9 - TSS region transcription start site region 89035
Tssr89036 9 42399769 to 42399793 24 - TSS region transcription start site region 89036
Tssr89037 9 42399804 to 42399877 73 - TSS region transcription start site region 89037
Tssr89038 9 42399882 to 42399895 13 - TSS region transcription start site region 89038
Tssr89039 9 42399900 to 42399912 12 - TSS region transcription start site region 89039
Tssr89040 9 42399915 to 42399926 11 - TSS region transcription start site region 89040
Tssr89041 9 42399940 to 42399960 20 - TSS region transcription start site region 89041
Tssr89042 9 42400041 to 42400048 7 - TSS region transcription start site region 89042
Tssr89043 9 42400059 to 42400074 15 - TSS region transcription start site region 89043
Tssr89044 9 42400155 to 42400170 15 - TSS region transcription start site region 89044
Tssr89045 9 42401564 to 42401579 15 - TSS region transcription start site region 89045
Tssr89046 9 42401582 to 42401593 11 - TSS region transcription start site region 89046
Tssr89047 9 42401598 to 42401620 22 - TSS region transcription start site region 89047
Tssr89048 9 42401636 to 42401670 34 - TSS region transcription start site region 89048
Tssr89049 9 42401676 to 42401697 21 - TSS region transcription start site region 89049
Tbcel 9 42412316 to 42472276 59960 - protein coding gene tubulin folding cofactor E-like
Tssr89050 9 42428153 to 42428163 10 - TSS region transcription start site region 89050
Tssr89051 9 42428181 to 42428197 16 - TSS region transcription start site region 89051
Tssr89052 9 42428198 to 42428209 11 - TSS region transcription start site region 89052
Tssr89053 9 42439549 to 42439586 37 - TSS region transcription start site region 89053
Gm44311 9 42442852 to 42442920 68 + miRNA gene predicted gene, 44311
Tssr89054 9 42457586 to 42457591 5 - TSS region transcription start site region 89054
Tssr89055 9 42457594 to 42457606 12 - TSS region transcription start site region 89055
Tssr89056 9 42461377 to 42461388 11 - TSS region transcription start site region 89056
Tssr89057 9 42461392 to 42461407 15 - TSS region transcription start site region 89057
Tssr89058 9 42461414 to 42461436 22 - TSS region transcription start site region 89058
Tssr89059 9 42463802 to 42463822 20 - TSS region transcription start site region 89059
Tssr84547 9 42466015 to 42466053 38 + TSS region transcription start site region 84547
Cpgi21620 9 42471869 to 42472443 574 CpG island CpG island 21620
Tssr89060 9 42472198 to 42472263 65 - TSS region transcription start site region 89060
Gm16322 9 42474555 to 42505662 31107 + antisense lncRNA gene predicted gene 16322
Grik4 9 42520412 to 42945154 424742 - protein coding gene glutamate receptor, ionotropic, kainate 4
Cpgi21621 9 42520531 to 42521220 689 CpG island CpG island 21621
Gm24420 9 42520773 to 42520831 58 - unclassified non-coding RNA gene predicted gene, 24420
Tssr84548 9 42571611 to 42571616 5 + TSS region transcription start site region 84548
9530085L02Rik 9 42608857 to 42613066 4209 unclassified non-coding RNA gene RIKEN cDNA 9530085L02 gene
Tssr84549 9 42673968 to 42674011 43 + TSS region transcription start site region 84549
Gm36590 9 42675009 to 42685183 10174 + lncRNA gene predicted gene, 36590
D9Mit254 9 42676189 to 42676285 96 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 254
Sluc39b 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39b
Sluc39d 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39d
Sluc39c 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39c
Sluc39a 9 42676189 to 42676285 96 QTL susceptibility to lung cancer 39a
Tssr89061 9 42770558 to 42770559 1 - TSS region transcription start site region 89061
Tssr2838 9 42776968 to 42777012 44 - TSS region transcription start site region 2838
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
D9Mit140 9 42853436 to 42853570 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 140
Gm27509 9 42862051 to 42862129 78 - miRNA gene predicted gene, 27509