Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:41585633-42385647

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
3110039I08Rik 9 41376526 to 41615185 238659 + lncRNA gene RIKEN cDNA 3110039I08 gene
Gm49317 9 41474855 to 41655483 180628 + lincRNA gene predicted gene, 49317
Tssr84531 9 41586485 to 41586512 27 + TSS region transcription start site region 84531
Tssr84532 9 41587431 to 41587437 6 + TSS region transcription start site region 84532
Tssr84533 9 41588374 to 41588382 8 + TSS region transcription start site region 84533
Tssr84534 9 41591741 to 41591764 23 + TSS region transcription start site region 84534
Tssr84535 9 41600132 to 41600150 18 + TSS region transcription start site region 84535
Gm48737 9 41618992 to 41621303 2311 + unclassified gene predicted gene, 48737
Gm8707 9 41654285 to 41655474 1189 + pseudogene predicted gene 8707
Gm48784 9 41659164 to 41675054 15890 - lincRNA gene predicted gene, 48784
Gm35835 9 41680147 to 41737398 57251 - lincRNA gene predicted gene, 35835
Tssr88998 9 41687837 to 41687845 8 - TSS region transcription start site region 88998
Gm46143 9 41760332 to 41765145 4813 + lncRNA gene predicted gene, 46143
6720432D03Rik 9 41803159 to 41805683 2524 - lncRNA gene RIKEN cDNA 6720432D03 gene
Gm35940 9 41804553 to 41834517 29964 + lncRNA gene predicted gene, 35940
Gm36032 9 41852138 to 41876283 24145 - lncRNA gene predicted gene, 36032
Tssr2833 9 41876197 to 41876205 8 - TSS region transcription start site region 2833
Tssr88999 9 41876213 to 41876218 5 - TSS region transcription start site region 88999
Gm48814 9 41876319 to 41879401 3082 + bidirectional promoter lncRNA gene predicted gene, 48814
Tssr84536 9 41885232 to 41885237 5 + TSS region transcription start site region 84536
Gm40513 9 41886627 to 41890549 3922 - lincRNA gene predicted gene, 40513
D9Mit328 9 41887849 to 41888030 181 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 328
Cpgi21613 9 41890287 to 41890870 583 CpG island CpG island 21613
Gm36170 9 41890583 to 41892399 1816 + lncRNA gene predicted gene, 36170
Gm40514 9 41906023 to 41910606 4583 - protein coding gene predicted gene, 40514
Gm36227 9 41911949 to 41919313 7364 - lncRNA gene predicted gene, 36227
Tssr89000 9 41934051 to 41934053 2 - TSS region transcription start site region 89000
Cpgi21614 9 41935738 to 41935929 191 CpG island CpG island 21614
Cpgi21615 9 41950633 to 41951475 842 CpG island CpG island 21615
Sorl1 9 41964718 to 42124289 159571 - protein coding gene sortilin-related receptor, LDLR class A repeats-containing
Tssr89001 9 41985633 to 41985647 14 - TSS region transcription start site region 89001
Tssr89002 9 41985789 to 41985799 10 - TSS region transcription start site region 89002
Tssr89003 9 41988239 to 41988269 30 - TSS region transcription start site region 89003
D9Bwg1411e 9 41995328 to 41995596 268 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1411 expressed
Tssr89004 9 42022419 to 42022430 11 - TSS region transcription start site region 89004
Gm16214 9 42022615 to 42034113 11498 + antisense lncRNA gene predicted gene 16214
Tssr89005 9 42033912 to 42033928 16 - TSS region transcription start site region 89005
Tssr89006 9 42069937 to 42069977 40 - TSS region transcription start site region 89006
Tssr84537 9 42076509 to 42076544 35 + TSS region transcription start site region 84537
Tssr84538 9 42095000 to 42095027 27 + TSS region transcription start site region 84538
Tssr89007 9 42097980 to 42097983 3 - TSS region transcription start site region 89007
Tssr89008 9 42098009 to 42098037 28 - TSS region transcription start site region 89008
D9Mit45 9 42117488 to 42117677 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 45
Tssr89009 9 42120326 to 42120369 43 - TSS region transcription start site region 89009
Tssr2834 9 42120429 to 42120469 40 + TSS region transcription start site region 2834
Tssr2835 9 42122536 to 42122574 38 - TSS region transcription start site region 2835
Tssr84539 9 42122703 to 42122713 10 + TSS region transcription start site region 84539
Cpgi21616 9 42123410 to 42124665 1255 CpG island CpG island 21616
Tssr89010 9 42124111 to 42124142 31 - TSS region transcription start site region 89010
Tssr89011 9 42124153 to 42124164 11 - TSS region transcription start site region 89011
Tssr89012 9 42124268 to 42124275 7 - TSS region transcription start site region 89012
Tssr89013 9 42124276 to 42124333 57 - TSS region transcription start site region 89013
Tssr89014 9 42124360 to 42124371 11 - TSS region transcription start site region 89014
Tssr84540 9 42138814 to 42138819 5 + TSS region transcription start site region 84540
Tssr84541 9 42142076 to 42142092 16 + TSS region transcription start site region 84541
Gm39321 9 42142092 to 42145394 3302 + lincRNA gene predicted gene, 39321
Tssr84542 9 42142104 to 42142115 11 + TSS region transcription start site region 84542
Tssr84543 9 42142119 to 42142134 15 + TSS region transcription start site region 84543
Tssr84544 9 42142139 to 42142150 11 + TSS region transcription start site region 84544
4930546K05Rik 9 42182238 to 42209231 26993 - lincRNA gene RIKEN cDNA 4930546K05 gene
Gm36390 9 42191901 to 42195243 3342 + lncRNA gene predicted gene, 36390
Gm40515 9 42228668 to 42241628 12960 - lncRNA gene predicted gene, 40515
Sc5d 9 42251595 to 42264256 12661 - protein coding gene sterol-C5-desaturase
Tssr89015 9 42258613 to 42258628 15 - TSS region transcription start site region 89015
Tssr89016 9 42259760 to 42259772 12 - TSS region transcription start site region 89016
Tssr89017 9 42262136 to 42262141 5 - TSS region transcription start site region 89017
Cpgi21617 9 42263654 to 42264643 989 CpG island CpG island 21617
Tssr89018 9 42264204 to 42264219 15 - TSS region transcription start site region 89018
Tssr89019 9 42264226 to 42264282 56 - TSS region transcription start site region 89019
Tssr84545 9 42264471 to 42264479 8 + TSS region transcription start site region 84545
Gm36435 9 42274816 to 42279871 5055 - lincRNA gene predicted gene, 36435
Tssr2836 9 42296822 to 42296831 9 + TSS region transcription start site region 2836
Tssr84546 9 42296848 to 42296857 9 + TSS region transcription start site region 84546
Gm26272 9 42317550 to 42317681 131 - snoRNA gene predicted gene, 26272
D9Mit313 9 42323501 to 42323770 269 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-313
Cpgi21618 9 42324791 to 42325121 330 CpG island CpG island 21618
Tecta 9 42329619 to 42399929 70310 - protein coding gene tectorin alpha
Tssr89020 9 42330976 to 42330998 22 - TSS region transcription start site region 89020
Tssr89021 9 42338953 to 42338970 17 - TSS region transcription start site region 89021
Tssr89022 9 42343874 to 42343875 1 - TSS region transcription start site region 89022
Tssr89023 9 42343883 to 42343893 10 - TSS region transcription start site region 89023
Cpgi21619 9 42347943 to 42348425 482 CpG island CpG island 21619