Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:41058882-41402191

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubash3b 9 41011098 to 41161697 150599 - protein coding gene ubiquitin associated and SH3 domain containing, B
Tssr88989 9 41075718 to 41075722 4 - TSS region transcription start site region 88989
D9Dcr138 9 41076617 to 41076712 95 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 138
Gm48611 9 41109527 to 41112081 2554 - unclassified gene predicted gene, 48611
D9Mit286 9 41121479 to 41121586 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 286
Tssr84490 9 41137398 to 41137413 15 + TSS region transcription start site region 84490
Cpgi21609 9 41156349 to 41157920 1571 CpG island CpG island 21609
Tssr88990 9 41157459 to 41157470 11 - TSS region transcription start site region 88990
Tssr88991 9 41157476 to 41157526 50 - TSS region transcription start site region 88991
Tssr88992 9 41157654 to 41157665 11 - TSS region transcription start site region 88992
Tssr88993 9 41157671 to 41157720 49 - TSS region transcription start site region 88993
Tssr88994 9 41157755 to 41157796 41 - TSS region transcription start site region 88994
Gm35657 9 41158643 to 41184888 26245 + lincRNA gene predicted gene, 35657
Tssr84491 9 41164332 to 41164343 11 + TSS region transcription start site region 84491
Gm6885 9 41164374 to 41164745 371 + pseudogene predicted gene 6885
Tssr84492 9 41206152 to 41206171 19 + TSS region transcription start site region 84492
1700063D05Rik 9 41206155 to 41217627 11472 + lincRNA gene RIKEN cDNA 1700063D05 gene
Tssr2832 9 41206186 to 41206189 3 + TSS region transcription start site region 2832
Cpgi21610 9 41207441 to 41207770 329 CpG island CpG island 21610
Tssr84493 9 41210687 to 41210709 22 + TSS region transcription start site region 84493
Tssr84494 9 41217200 to 41217244 44 + TSS region transcription start site region 84494
Cpgi21611 9 41228764 to 41229251 487 CpG island CpG island 21611
Gm48710 9 41228882 to 41232191 3309 + unclassified gene predicted gene, 48710
Tssr84495 9 41327069 to 41327092 23 + TSS region transcription start site region 84495
Tssr84496 9 41327274 to 41327291 17 + TSS region transcription start site region 84496
Gm25401 9 41339436 to 41339541 105 - snRNA gene predicted gene, 25401
Tssr84497 9 41355213 to 41355218 5 + TSS region transcription start site region 84497
Cpgi21612 9 41376248 to 41376798 550 CpG island CpG island 21612
Tssr84498 9 41376392 to 41376406 14 + TSS region transcription start site region 84498
Tssr84499 9 41376412 to 41376434 22 + TSS region transcription start site region 84499
Tssr84500 9 41376466 to 41376485 19 + TSS region transcription start site region 84500
Tssr84501 9 41376488 to 41376497 9 + TSS region transcription start site region 84501
3110039I08Rik 9 41376526 to 41615185 238659 + lncRNA gene RIKEN cDNA 3110039I08 gene
Tssr84502 9 41376898 to 41376908 10 + TSS region transcription start site region 84502
Tssr84503 9 41378432 to 41378464 32 + TSS region transcription start site region 84503
Tssr84504 9 41396279 to 41396280 1 + TSS region transcription start site region 84504