Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40988643-41354888

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crtam 9 40972798 to 41004628 31830 - protein coding gene cytotoxic and regulatory T cell molecule
Tssr88979 9 40994573 to 40994589 16 - TSS region transcription start site region 88979
Tssr88980 9 40994591 to 40994617 26 - TSS region transcription start site region 88980
Tssr88981 9 41004562 to 41004573 11 - TSS region transcription start site region 88981
Tssr88982 9 41004599 to 41004632 33 - TSS region transcription start site region 88982
Tssr88983 9 41004695 to 41004714 19 - TSS region transcription start site region 88983
Ubash3b 9 41011098 to 41161697 150599 - protein coding gene ubiquitin associated and SH3 domain containing, B
Tssr88984 9 41012904 to 41012908 4 - TSS region transcription start site region 88984
Tssr88985 9 41014097 to 41014112 15 - TSS region transcription start site region 88985
Tssr88986 9 41014189 to 41014205 16 - TSS region transcription start site region 88986
Tssr88987 9 41014258 to 41014274 16 - TSS region transcription start site region 88987
Tssr88988 9 41014329 to 41014371 42 - TSS region transcription start site region 88988
Tssr88989 9 41075718 to 41075722 4 - TSS region transcription start site region 88989
D9Dcr138 9 41076617 to 41076712 95 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 138
Gm48611 9 41109527 to 41112081 2554 - unclassified gene predicted gene, 48611
D9Mit286 9 41121479 to 41121586 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 286
Tssr84490 9 41137398 to 41137413 15 + TSS region transcription start site region 84490
Cpgi21609 9 41156349 to 41157920 1571 CpG island CpG island 21609
Tssr88990 9 41157459 to 41157470 11 - TSS region transcription start site region 88990
Tssr88991 9 41157476 to 41157526 50 - TSS region transcription start site region 88991
Tssr88992 9 41157654 to 41157665 11 - TSS region transcription start site region 88992
Tssr88993 9 41157671 to 41157720 49 - TSS region transcription start site region 88993
Tssr88994 9 41157755 to 41157796 41 - TSS region transcription start site region 88994
Gm35657 9 41158643 to 41184888 26245 + lincRNA gene predicted gene, 35657
Tssr84491 9 41164332 to 41164343 11 + TSS region transcription start site region 84491
Gm6885 9 41164374 to 41164745 371 + pseudogene predicted gene 6885
Tssr84492 9 41206152 to 41206171 19 + TSS region transcription start site region 84492
1700063D05Rik 9 41206155 to 41217627 11472 + lincRNA gene RIKEN cDNA 1700063D05 gene
Tssr2832 9 41206186 to 41206189 3 + TSS region transcription start site region 2832
Cpgi21610 9 41207441 to 41207770 329 CpG island CpG island 21610
Tssr84493 9 41210687 to 41210709 22 + TSS region transcription start site region 84493
Tssr84494 9 41217200 to 41217244 44 + TSS region transcription start site region 84494
Cpgi21611 9 41228764 to 41229251 487 CpG island CpG island 21611
Gm48710 9 41228882 to 41232191 3309 + unclassified gene predicted gene, 48710
Tssr84495 9 41327069 to 41327092 23 + TSS region transcription start site region 84495
Tssr84496 9 41327274 to 41327291 17 + TSS region transcription start site region 84496
Gm25401 9 41339436 to 41339541 105 - snRNA gene predicted gene, 25401