Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40871595-43644256

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324 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
Cpgi21604 9 40871658 to 40872132 474 CpG island CpG island 21604
Tssr84489 9 40873981 to 40873998 17 + TSS region transcription start site region 84489
Bsx 9 40874127 to 40878962 4835 + protein coding gene brain specific homeobox
Cpgi21605 9 40875585 to 40875800 215 CpG island CpG island 21605
Cpgi21606 9 40876162 to 40876599 437 CpG island CpG island 21606
Cpgi21607 9 40877509 to 40878857 1348 CpG island CpG island 21607
Jhy 9 40894849 to 40964118 69269 - protein coding gene junctional cadherin complex regulator
Gm18586 9 40929909 to 40930426 517 - pseudogene predicted gene, 18586
Tssr88973 9 40963043 to 40963046 3 - TSS region transcription start site region 88973
Tssr88974 9 40963505 to 40963513 8 - TSS region transcription start site region 88974
Cpgi21608 9 40963692 to 40964573 881 CpG island CpG island 21608
Crtam 9 40972798 to 41004628 31830 - protein coding gene cytotoxic and regulatory T cell molecule
Tssr88975 9 40984460 to 40984474 14 - TSS region transcription start site region 88975
Tssr88976 9 40984479 to 40984487 8 - TSS region transcription start site region 88976
Tssr88977 9 40984488 to 40984500 12 - TSS region transcription start site region 88977
Tssr88978 9 40984501 to 40984502 1 - TSS region transcription start site region 88978
Tssr88979 9 40994573 to 40994589 16 - TSS region transcription start site region 88979
Tssr88980 9 40994591 to 40994617 26 - TSS region transcription start site region 88980
Tssr88981 9 41004562 to 41004573 11 - TSS region transcription start site region 88981
Tssr88982 9 41004599 to 41004632 33 - TSS region transcription start site region 88982
Tssr88983 9 41004695 to 41004714 19 - TSS region transcription start site region 88983
Ubash3b 9 41011098 to 41161697 150599 - protein coding gene ubiquitin associated and SH3 domain containing, B
Tssr88984 9 41012904 to 41012908 4 - TSS region transcription start site region 88984
Tssr88985 9 41014097 to 41014112 15 - TSS region transcription start site region 88985
Tssr88986 9 41014189 to 41014205 16 - TSS region transcription start site region 88986
Tssr88987 9 41014258 to 41014274 16 - TSS region transcription start site region 88987
Tssr88988 9 41014329 to 41014371 42 - TSS region transcription start site region 88988
Tssr88989 9 41075718 to 41075722 4 - TSS region transcription start site region 88989
D9Dcr138 9 41076617 to 41076712 95 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 138
Gm48611 9 41109527 to 41112081 2554 - unclassified gene predicted gene, 48611
D9Mit286 9 41121479 to 41121586 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 286
Tssr84490 9 41137398 to 41137413 15 + TSS region transcription start site region 84490
Cpgi21609 9 41156349 to 41157920 1571 CpG island CpG island 21609
Tssr88990 9 41157459 to 41157470 11 - TSS region transcription start site region 88990
Tssr88991 9 41157476 to 41157526 50 - TSS region transcription start site region 88991
Tssr88992 9 41157654 to 41157665 11 - TSS region transcription start site region 88992
Tssr88993 9 41157671 to 41157720 49 - TSS region transcription start site region 88993
Tssr88994 9 41157755 to 41157796 41 - TSS region transcription start site region 88994
Gm35657 9 41158643 to 41184888 26245 + lincRNA gene predicted gene, 35657
Tssr84491 9 41164332 to 41164343 11 + TSS region transcription start site region 84491
Gm6885 9 41164374 to 41164745 371 + pseudogene predicted gene 6885
Tssr84492 9 41206152 to 41206171 19 + TSS region transcription start site region 84492
1700063D05Rik 9 41206155 to 41217627 11472 + lincRNA gene RIKEN cDNA 1700063D05 gene
Tssr2832 9 41206186 to 41206189 3 + TSS region transcription start site region 2832
Cpgi21610 9 41207441 to 41207770 329 CpG island CpG island 21610
Tssr84493 9 41210687 to 41210709 22 + TSS region transcription start site region 84493
Tssr84494 9 41217200 to 41217244 44 + TSS region transcription start site region 84494
Cpgi21611 9 41228764 to 41229251 487 CpG island CpG island 21611
Gm48710 9 41228882 to 41232191 3309 + unclassified gene predicted gene, 48710
Tssr84495 9 41327069 to 41327092 23 + TSS region transcription start site region 84495
Tssr84496 9 41327274 to 41327291 17 + TSS region transcription start site region 84496
Gm25401 9 41339436 to 41339541 105 - snRNA gene predicted gene, 25401
Tssr84497 9 41355213 to 41355218 5 + TSS region transcription start site region 84497
Cpgi21612 9 41376248 to 41376798 550 CpG island CpG island 21612
Tssr84498 9 41376392 to 41376406 14 + TSS region transcription start site region 84498
Tssr84499 9 41376412 to 41376434 22 + TSS region transcription start site region 84499
Tssr84500 9 41376466 to 41376485 19 + TSS region transcription start site region 84500
Tssr84501 9 41376488 to 41376497 9 + TSS region transcription start site region 84501
3110039I08Rik 9 41376526 to 41615185 238659 + lncRNA gene RIKEN cDNA 3110039I08 gene
Tssr84502 9 41376898 to 41376908 10 + TSS region transcription start site region 84502
Tssr84503 9 41378432 to 41378464 32 + TSS region transcription start site region 84503
Tssr84504 9 41396279 to 41396280 1 + TSS region transcription start site region 84504
Gm48742 9 41405374 to 41532087 126713 - lincRNA gene predicted gene, 48742
Gm48739 9 41419051 to 41419482 431 + pseudogene predicted gene, 48739
Tssr84505 9 41446677 to 41446688 11 + TSS region transcription start site region 84505
Tssr84506 9 41446689 to 41446717 28 + TSS region transcription start site region 84506
Tssr84507 9 41447106 to 41447110 4 + TSS region transcription start site region 84507
Tssr84508 9 41474820 to 41474882 62 + TSS region transcription start site region 84508
Gm49317 9 41474855 to 41655483 180628 + lincRNA gene predicted gene, 49317
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
D9Mit227 9 41490866 to 41490948 82 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 227
Gm48736 9 41513525 to 41513780 255 - pseudogene predicted gene, 48736
Tssr84509 9 41523852 to 41523883 31 + TSS region transcription start site region 84509
Mir100 9 41531425 to 41531504 79 + miRNA gene microRNA 100
Tssr84510 9 41531492 to 41531499 7 + TSS region transcription start site region 84510
Tssr84511 9 41531998 to 41532021 23 + TSS region transcription start site region 84511
Mirlet7a-2 9 41536716 to 41536811 95 + miRNA gene microRNA let7a-2
Gm48740 9 41551506 to 41559259 7753 - lincRNA gene predicted gene, 48740
D9Mit139.1 9 41554158 to 41554282 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 139.1
D9Mit139 9 41554260 to 41554397 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 139
Tssr88995 9 41579512 to 41579523 11 - TSS region transcription start site region 88995
Tssr88996 9 41579546 to 41579563 17 - TSS region transcription start site region 88996
Tssr84512 9 41579660 to 41579669 9 + TSS region transcription start site region 84512
Tssr84513 9 41579688 to 41579717 29 + TSS region transcription start site region 84513
Tssr84514 9 41579850 to 41579892 42 + TSS region transcription start site region 84514
Tssr84515 9 41579935 to 41579967 32 + TSS region transcription start site region 84515
Tssr84516 9 41579970 to 41579991 21 + TSS region transcription start site region 84516
Tssr84517 9 41580003 to 41580017 14 + TSS region transcription start site region 84517
Tssr84518 9 41580703 to 41580717 14 + TSS region transcription start site region 84518
Tssr84519 9 41580751 to 41580752 1 + TSS region transcription start site region 84519
Tssr88997 9 41580786 to 41580808 22 - TSS region transcription start site region 88997
Tssr84520 9 41580903 to 41580922 19 + TSS region transcription start site region 84520
Tssr84521 9 41580944 to 41580967 23 + TSS region transcription start site region 84521
Tssr84522 9 41580968 to 41581004 36 + TSS region transcription start site region 84522
Tssr84523 9 41581066 to 41581100 34 + TSS region transcription start site region 84523
Tssr84524 9 41581247 to 41581260 13 + TSS region transcription start site region 84524
Tssr84525 9 41581300 to 41581316 16 + TSS region transcription start site region 84525
Tssr84526 9 41581331 to 41581351 20 + TSS region transcription start site region 84526
Gm28119 9 41581908 to 41582283 375 + sense intronic lncRNA gene predicted gene 28119
Mir125b-1 9 41581926 to 41582002 76 + miRNA gene microRNA 125b-1
Tssr84527 9 41582000 to 41582004 4 + TSS region transcription start site region 84527
Tssr84528 9 41583024 to 41583042 18 + TSS region transcription start site region 84528
Tssr84529 9 41584411 to 41584415 4 + TSS region transcription start site region 84529
Tssr84530 9 41585391 to 41585398 7 + TSS region transcription start site region 84530
Tssr84531 9 41586485 to 41586512 27 + TSS region transcription start site region 84531
Tssr84532 9 41587431 to 41587437 6 + TSS region transcription start site region 84532
Tssr84533 9 41588374 to 41588382 8 + TSS region transcription start site region 84533
Tssr84534 9 41591741 to 41591764 23 + TSS region transcription start site region 84534
Tssr84535 9 41600132 to 41600150 18 + TSS region transcription start site region 84535
Gm48737 9 41618992 to 41621303 2311 + unclassified gene predicted gene, 48737
Gm8707 9 41654285 to 41655474 1189 + pseudogene predicted gene 8707
Gm48784 9 41659164 to 41675054 15890 - lincRNA gene predicted gene, 48784
Gm35835 9 41680147 to 41737398 57251 - lincRNA gene predicted gene, 35835
Tssr88998 9 41687837 to 41687845 8 - TSS region transcription start site region 88998
Gm46143 9 41760332 to 41765145 4813 + lncRNA gene predicted gene, 46143
6720432D03Rik 9 41803159 to 41805683 2524 - lncRNA gene RIKEN cDNA 6720432D03 gene
Gm35940 9 41804553 to 41834517 29964 + lncRNA gene predicted gene, 35940
Gm36032 9 41852138 to 41876283 24145 - lncRNA gene predicted gene, 36032
Tssr2833 9 41876197 to 41876205 8 - TSS region transcription start site region 2833
Tssr88999 9 41876213 to 41876218 5 - TSS region transcription start site region 88999
Gm48814 9 41876319 to 41879401 3082 + bidirectional promoter lncRNA gene predicted gene, 48814
Tssr84536 9 41885232 to 41885237 5 + TSS region transcription start site region 84536
Gm40513 9 41886627 to 41890549 3922 - lincRNA gene predicted gene, 40513
D9Mit328 9 41887849 to 41888030 181 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 328
Cpgi21613 9 41890287 to 41890870 583 CpG island CpG island 21613
Gm36170 9 41890583 to 41892399 1816 + lncRNA gene predicted gene, 36170
Gm40514 9 41906023 to 41910606 4583 - protein coding gene predicted gene, 40514
Gm36227 9 41911949 to 41919313 7364 - lncRNA gene predicted gene, 36227
Tssr89000 9 41934051 to 41934053 2 - TSS region transcription start site region 89000
Cpgi21614 9 41935738 to 41935929 191 CpG island CpG island 21614
Cpgi21615 9 41950633 to 41951475 842 CpG island CpG island 21615
Sorl1 9 41964718 to 42124289 159571 - protein coding gene sortilin-related receptor, LDLR class A repeats-containing
Tssr89001 9 41985633 to 41985647 14 - TSS region transcription start site region 89001
Tssr89002 9 41985789 to 41985799 10 - TSS region transcription start site region 89002
Tssr89003 9 41988239 to 41988269 30 - TSS region transcription start site region 89003
D9Bwg1411e 9 41995328 to 41995596 268 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1411 expressed
Tssr89004 9 42022419 to 42022430 11 - TSS region transcription start site region 89004
Gm16214 9 42022615 to 42034113 11498 + antisense lncRNA gene predicted gene 16214
Tssr89005 9 42033912 to 42033928 16 - TSS region transcription start site region 89005
Tssr89006 9 42069937 to 42069977 40 - TSS region transcription start site region 89006
Tssr84537 9 42076509 to 42076544 35 + TSS region transcription start site region 84537
Tssr84538 9 42095000 to 42095027 27 + TSS region transcription start site region 84538
Tssr89007 9 42097980 to 42097983 3 - TSS region transcription start site region 89007
Tssr89008 9 42098009 to 42098037 28 - TSS region transcription start site region 89008
D9Mit45 9 42117488 to 42117677 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 45
Tssr89009 9 42120326 to 42120369 43 - TSS region transcription start site region 89009
Tssr2834 9 42120429 to 42120469 40 + TSS region transcription start site region 2834
Tssr2835 9 42122536 to 42122574 38 - TSS region transcription start site region 2835
Tssr84539 9 42122703 to 42122713 10 + TSS region transcription start site region 84539
Cpgi21616 9 42123410 to 42124665 1255 CpG island CpG island 21616
Tssr89010 9 42124111 to 42124142 31 - TSS region transcription start site region 89010
Tssr89011 9 42124153 to 42124164 11 - TSS region transcription start site region 89011
Tssr89012 9 42124268 to 42124275 7 - TSS region transcription start site region 89012
Tssr89013 9 42124276 to 42124333 57 - TSS region transcription start site region 89013
Tssr89014 9 42124360 to 42124371 11 - TSS region transcription start site region 89014
Tssr84540 9 42138814 to 42138819 5 + TSS region transcription start site region 84540
Tssr84541 9 42142076 to 42142092 16 + TSS region transcription start site region 84541
Gm39321 9 42142092 to 42145394 3302 + lincRNA gene predicted gene, 39321
Tssr84542 9 42142104 to 42142115 11 + TSS region transcription start site region 84542
Tssr84543 9 42142119 to 42142134 15 + TSS region transcription start site region 84543
Tssr84544 9 42142139 to 42142150 11 + TSS region transcription start site region 84544
4930546K05Rik 9 42182238 to 42209231 26993 - lincRNA gene RIKEN cDNA 4930546K05 gene
Gm36390 9 42191901 to 42195243 3342 + lncRNA gene predicted gene, 36390
Gm40515 9 42228668 to 42241628 12960 - lncRNA gene predicted gene, 40515
Sc5d 9 42251595 to 42264256 12661 - protein coding gene sterol-C5-desaturase
Tssr89015 9 42258613 to 42258628 15 - TSS region transcription start site region 89015
Tssr89016 9 42259760 to 42259772 12 - TSS region transcription start site region 89016
Tssr89017 9 42262136 to 42262141 5 - TSS region transcription start site region 89017
Cpgi21617 9 42263654 to 42264643 989 CpG island CpG island 21617
Tssr89018 9 42264204 to 42264219 15 - TSS region transcription start site region 89018
Tssr89019 9 42264226 to 42264282 56 - TSS region transcription start site region 89019
Tssr84545 9 42264471 to 42264479 8 + TSS region transcription start site region 84545
Gm36435 9 42274816 to 42279871 5055 - lincRNA gene predicted gene, 36435
Tssr2836 9 42296822 to 42296831 9 + TSS region transcription start site region 2836
Tssr84546 9 42296848 to 42296857 9 + TSS region transcription start site region 84546
Gm26272 9 42317550 to 42317681 131 - snoRNA gene predicted gene, 26272
D9Mit313 9 42323501 to 42323770 269 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-313
Cpgi21618 9 42324791 to 42325121 330 CpG island CpG island 21618
Tecta 9 42329619 to 42399929 70310 - protein coding gene tectorin alpha
Tssr89020 9 42330976 to 42330998 22 - TSS region transcription start site region 89020
Tssr89021 9 42338953 to 42338970 17 - TSS region transcription start site region 89021
Tssr89022 9 42343874 to 42343875 1 - TSS region transcription start site region 89022
Tssr89023 9 42343883 to 42343893 10 - TSS region transcription start site region 89023
Cpgi21619 9 42347943 to 42348425 482 CpG island CpG island 21619
Gm47629 9 42385862 to 42390886 5024 + antisense lncRNA gene predicted gene, 47629
Tssr89024 9 42394600 to 42394601 1 - TSS region transcription start site region 89024
Tssr89025 9 42398647 to 42398656 9 - TSS region transcription start site region 89025
Tssr89026 9 42398662 to 42398691 29 - TSS region transcription start site region 89026
Tssr89027 9 42398701 to 42398710 9 - TSS region transcription start site region 89027
Tssr89028 9 42399292 to 42399301 9 - TSS region transcription start site region 89028
Tssr89029 9 42399314 to 42399325 11 - TSS region transcription start site region 89029
Tssr89030 9 42399488 to 42399495 7 - TSS region transcription start site region 89030
Tssr2837 9 42399550 to 42399558 8 - TSS region transcription start site region 2837
Tssr89031 9 42399614 to 42399622 8 - TSS region transcription start site region 89031
Tssr89032 9 42399694 to 42399706 12 - TSS region transcription start site region 89032
Tssr89033 9 42399709 to 42399722 13 - TSS region transcription start site region 89033
Tssr89034 9 42399740 to 42399747 7 - TSS region transcription start site region 89034
Tssr89035 9 42399755 to 42399764 9 - TSS region transcription start site region 89035