Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40661949-43169313

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343 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
Gm39319 9 40663495 to 40666505 3010 - lncRNA gene predicted gene, 39319
Gm35371 9 40667960 to 40669107 1147 - lincRNA gene predicted gene, 35371
Gm21915 9 40670613 to 40671014 401 + protein coding gene predicted gene, 21915
Gm48288 9 40679645 to 40680407 762 - pseudogene predicted gene, 48288
Cpgi21597 9 40685733 to 40686726 993 CpG island CpG island 21597
Tssr84456 9 40685954 to 40685976 22 + TSS region transcription start site region 84456
Clmp 9 40685962 to 40785319 99357 + protein coding gene CXADR-like membrane protein
Tssr84457 9 40685988 to 40685999 11 + TSS region transcription start site region 84457
Tssr84458 9 40686002 to 40686059 57 + TSS region transcription start site region 84458
Tssr84459 9 40687842 to 40687853 11 + TSS region transcription start site region 84459
Tssr88967 9 40687906 to 40687911 5 - TSS region transcription start site region 88967
Tssr84460 9 40696117 to 40696120 3 + TSS region transcription start site region 84460
Tssr84461 9 40710109 to 40710115 6 + TSS region transcription start site region 84461
Gm48294 9 40715158 to 40720034 4876 + sense intronic lncRNA gene predicted gene, 48294
Gm16095 9 40718906 to 40719986 1080 - antisense lncRNA gene predicted gene 16095
Cpgi21598 9 40730716 to 40731105 389 CpG island CpG island 21598
Tssr84462 9 40730954 to 40730978 24 + TSS region transcription start site region 84462
Tssr84463 9 40731003 to 40731014 11 + TSS region transcription start site region 84463
D9Mit253 9 40734078 to 40734294 216 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 253
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Gm48293 9 40747281 to 40762673 15392 - antisense lncRNA gene predicted gene, 48293
Cpgi21599 9 40757860 to 40758210 350 CpG island CpG island 21599
Tssr84464 9 40770767 to 40770792 25 + TSS region transcription start site region 84464
Cpgi21600 9 40772389 to 40772905 516 CpG island CpG island 21600
Tssr84465 9 40774413 to 40774429 16 + TSS region transcription start site region 84465
Tssr84466 9 40776762 to 40776785 23 + TSS region transcription start site region 84466
Tssr84467 9 40780334 to 40780365 31 + TSS region transcription start site region 84467
Gm16096 9 40780742 to 40784181 3439 - unclassified non-coding RNA gene predicted gene 16096
Tssr84468 9 40781076 to 40781090 14 + TSS region transcription start site region 84468
Tssr84469 9 40781128 to 40781177 49 + TSS region transcription start site region 84469
Cpgi21601 9 40782251 to 40782540 289 CpG island CpG island 21601
Tssr84470 9 40782277 to 40782322 45 + TSS region transcription start site region 84470
Tssr84471 9 40782404 to 40782427 23 + TSS region transcription start site region 84471
Tssr88968 9 40783055 to 40783105 50 - TSS region transcription start site region 88968
Tssr88969 9 40783650 to 40783661 11 - TSS region transcription start site region 88969
Tssr88970 9 40784041 to 40784047 6 - TSS region transcription start site region 88970
Tssr88971 9 40784140 to 40784156 16 - TSS region transcription start site region 88971
Tssr84472 9 40784833 to 40784846 13 + TSS region transcription start site region 84472
Tssr84473 9 40784937 to 40784956 19 + TSS region transcription start site region 84473
Tssr84474 9 40784974 to 40784985 11 + TSS region transcription start site region 84474
Tssr84475 9 40784992 to 40785021 29 + TSS region transcription start site region 84475
Tssr84476 9 40785069 to 40785108 39 + TSS region transcription start site region 84476
Tssr84477 9 40794538 to 40794562 24 + TSS region transcription start site region 84477
Tssr84478 9 40798465 to 40798491 26 + TSS region transcription start site region 84478
Tssr84479 9 40799326 to 40799366 40 + TSS region transcription start site region 84479
Cpgi21602 9 40799988 to 40800156 168 CpG island CpG island 21602
Tssr84480 9 40800088 to 40800106 18 + TSS region transcription start site region 84480
Cpgi21603 9 40800433 to 40801891 1458 CpG island CpG island 21603
Tssr88972 9 40800762 to 40800786 24 - TSS region transcription start site region 88972
Tssr84481 9 40801266 to 40801284 18 + TSS region transcription start site region 84481
Hspa8 9 40801273 to 40805199 3926 + protein coding gene heat shock protein 8
Tssr84482 9 40801905 to 40801913 8 + TSS region transcription start site region 84482
Tssr84483 9 40802366 to 40802369 3 + TSS region transcription start site region 84483
Tssr84484 9 40802625 to 40802656 31 + TSS region transcription start site region 84484
Snord14c 9 40803583 to 40803668 85 + snoRNA gene small nucleolar RNA, C/D box 14C
Snord14d 9 40803995 to 40804080 85 + snoRNA gene small nucleolar RNA, C/D box 14D
Tssr84485 9 40804224 to 40804235 11 + TSS region transcription start site region 84485
Tssr84486 9 40804739 to 40804751 12 + TSS region transcription start site region 84486
Snord14e 9 40804748 to 40804837 89 + snoRNA gene small nucleolar RNA, C/D box 14E
Tssr84487 9 40806638 to 40806642 4 + TSS region transcription start site region 84487
Tssr84488 9 40809251 to 40809255 4 + TSS region transcription start site region 84488
Gm48565 9 40820969 to 40822673 1704 + unclassified gene predicted gene, 48565
Cpgi21604 9 40871658 to 40872132 474 CpG island CpG island 21604
Tssr84489 9 40873981 to 40873998 17 + TSS region transcription start site region 84489
Bsx 9 40874127 to 40878962 4835 + protein coding gene brain specific homeobox
Cpgi21605 9 40875585 to 40875800 215 CpG island CpG island 21605
Cpgi21606 9 40876162 to 40876599 437 CpG island CpG island 21606
Cpgi21607 9 40877509 to 40878857 1348 CpG island CpG island 21607
Jhy 9 40894849 to 40964118 69269 - protein coding gene junctional cadherin complex regulator
Gm18586 9 40929909 to 40930426 517 - pseudogene predicted gene, 18586
Tssr88973 9 40963043 to 40963046 3 - TSS region transcription start site region 88973
Tssr88974 9 40963505 to 40963513 8 - TSS region transcription start site region 88974
Cpgi21608 9 40963692 to 40964573 881 CpG island CpG island 21608
Crtam 9 40972798 to 41004628 31830 - protein coding gene cytotoxic and regulatory T cell molecule
Tssr88975 9 40984460 to 40984474 14 - TSS region transcription start site region 88975
Tssr88976 9 40984479 to 40984487 8 - TSS region transcription start site region 88976
Tssr88977 9 40984488 to 40984500 12 - TSS region transcription start site region 88977
Tssr88978 9 40984501 to 40984502 1 - TSS region transcription start site region 88978
Tssr88979 9 40994573 to 40994589 16 - TSS region transcription start site region 88979
Tssr88980 9 40994591 to 40994617 26 - TSS region transcription start site region 88980
Tssr88981 9 41004562 to 41004573 11 - TSS region transcription start site region 88981
Tssr88982 9 41004599 to 41004632 33 - TSS region transcription start site region 88982
Tssr88983 9 41004695 to 41004714 19 - TSS region transcription start site region 88983
Ubash3b 9 41011098 to 41161697 150599 - protein coding gene ubiquitin associated and SH3 domain containing, B
Tssr88984 9 41012904 to 41012908 4 - TSS region transcription start site region 88984
Tssr88985 9 41014097 to 41014112 15 - TSS region transcription start site region 88985
Tssr88986 9 41014189 to 41014205 16 - TSS region transcription start site region 88986
Tssr88987 9 41014258 to 41014274 16 - TSS region transcription start site region 88987
Tssr88988 9 41014329 to 41014371 42 - TSS region transcription start site region 88988
Tssr88989 9 41075718 to 41075722 4 - TSS region transcription start site region 88989
D9Dcr138 9 41076617 to 41076712 95 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 138
Gm48611 9 41109527 to 41112081 2554 - unclassified gene predicted gene, 48611
D9Mit286 9 41121479 to 41121586 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 286
Tssr84490 9 41137398 to 41137413 15 + TSS region transcription start site region 84490
Cpgi21609 9 41156349 to 41157920 1571 CpG island CpG island 21609
Tssr88990 9 41157459 to 41157470 11 - TSS region transcription start site region 88990
Tssr88991 9 41157476 to 41157526 50 - TSS region transcription start site region 88991
Tssr88992 9 41157654 to 41157665 11 - TSS region transcription start site region 88992
Tssr88993 9 41157671 to 41157720 49 - TSS region transcription start site region 88993
Tssr88994 9 41157755 to 41157796 41 - TSS region transcription start site region 88994
Gm35657 9 41158643 to 41184888 26245 + lincRNA gene predicted gene, 35657
Tssr84491 9 41164332 to 41164343 11 + TSS region transcription start site region 84491
Gm6885 9 41164374 to 41164745 371 + pseudogene predicted gene 6885
Tssr84492 9 41206152 to 41206171 19 + TSS region transcription start site region 84492
1700063D05Rik 9 41206155 to 41217627 11472 + lincRNA gene RIKEN cDNA 1700063D05 gene
Tssr2832 9 41206186 to 41206189 3 + TSS region transcription start site region 2832
Cpgi21610 9 41207441 to 41207770 329 CpG island CpG island 21610
Tssr84493 9 41210687 to 41210709 22 + TSS region transcription start site region 84493
Tssr84494 9 41217200 to 41217244 44 + TSS region transcription start site region 84494
Cpgi21611 9 41228764 to 41229251 487 CpG island CpG island 21611
Gm48710 9 41228882 to 41232191 3309 + unclassified gene predicted gene, 48710
Tssr84495 9 41327069 to 41327092 23 + TSS region transcription start site region 84495
Tssr84496 9 41327274 to 41327291 17 + TSS region transcription start site region 84496
Gm25401 9 41339436 to 41339541 105 - snRNA gene predicted gene, 25401
Tssr84497 9 41355213 to 41355218 5 + TSS region transcription start site region 84497
Cpgi21612 9 41376248 to 41376798 550 CpG island CpG island 21612
Tssr84498 9 41376392 to 41376406 14 + TSS region transcription start site region 84498
Tssr84499 9 41376412 to 41376434 22 + TSS region transcription start site region 84499
Tssr84500 9 41376466 to 41376485 19 + TSS region transcription start site region 84500
Tssr84501 9 41376488 to 41376497 9 + TSS region transcription start site region 84501
3110039I08Rik 9 41376526 to 41615185 238659 + lncRNA gene RIKEN cDNA 3110039I08 gene
Tssr84502 9 41376898 to 41376908 10 + TSS region transcription start site region 84502
Tssr84503 9 41378432 to 41378464 32 + TSS region transcription start site region 84503
Tssr84504 9 41396279 to 41396280 1 + TSS region transcription start site region 84504
Gm48742 9 41405374 to 41532087 126713 - lincRNA gene predicted gene, 48742
Gm48739 9 41419051 to 41419482 431 + pseudogene predicted gene, 48739
Tssr84505 9 41446677 to 41446688 11 + TSS region transcription start site region 84505
Tssr84506 9 41446689 to 41446717 28 + TSS region transcription start site region 84506
Tssr84507 9 41447106 to 41447110 4 + TSS region transcription start site region 84507
Tssr84508 9 41474820 to 41474882 62 + TSS region transcription start site region 84508
Gm49317 9 41474855 to 41655483 180628 + lincRNA gene predicted gene, 49317
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
D9Mit227 9 41490866 to 41490948 82 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 227
Gm48736 9 41513525 to 41513780 255 - pseudogene predicted gene, 48736
Tssr84509 9 41523852 to 41523883 31 + TSS region transcription start site region 84509
Mir100 9 41531425 to 41531504 79 + miRNA gene microRNA 100
Tssr84510 9 41531492 to 41531499 7 + TSS region transcription start site region 84510
Tssr84511 9 41531998 to 41532021 23 + TSS region transcription start site region 84511
Mirlet7a-2 9 41536716 to 41536811 95 + miRNA gene microRNA let7a-2
Gm48740 9 41551506 to 41559259 7753 - lincRNA gene predicted gene, 48740
D9Mit139.1 9 41554158 to 41554282 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 139.1
D9Mit139 9 41554260 to 41554397 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 139
Tssr88995 9 41579512 to 41579523 11 - TSS region transcription start site region 88995
Tssr88996 9 41579546 to 41579563 17 - TSS region transcription start site region 88996
Tssr84512 9 41579660 to 41579669 9 + TSS region transcription start site region 84512
Tssr84513 9 41579688 to 41579717 29 + TSS region transcription start site region 84513
Tssr84514 9 41579850 to 41579892 42 + TSS region transcription start site region 84514
Tssr84515 9 41579935 to 41579967 32 + TSS region transcription start site region 84515
Tssr84516 9 41579970 to 41579991 21 + TSS region transcription start site region 84516
Tssr84517 9 41580003 to 41580017 14 + TSS region transcription start site region 84517
Tssr84518 9 41580703 to 41580717 14 + TSS region transcription start site region 84518
Tssr84519 9 41580751 to 41580752 1 + TSS region transcription start site region 84519
Tssr88997 9 41580786 to 41580808 22 - TSS region transcription start site region 88997
Tssr84520 9 41580903 to 41580922 19 + TSS region transcription start site region 84520
Tssr84521 9 41580944 to 41580967 23 + TSS region transcription start site region 84521
Tssr84522 9 41580968 to 41581004 36 + TSS region transcription start site region 84522
Tssr84523 9 41581066 to 41581100 34 + TSS region transcription start site region 84523
Tssr84524 9 41581247 to 41581260 13 + TSS region transcription start site region 84524
Tssr84525 9 41581300 to 41581316 16 + TSS region transcription start site region 84525
Tssr84526 9 41581331 to 41581351 20 + TSS region transcription start site region 84526
Gm28119 9 41581908 to 41582283 375 + sense intronic lncRNA gene predicted gene 28119
Mir125b-1 9 41581926 to 41582002 76 + miRNA gene microRNA 125b-1
Tssr84527 9 41582000 to 41582004 4 + TSS region transcription start site region 84527
Tssr84528 9 41583024 to 41583042 18 + TSS region transcription start site region 84528
Tssr84529 9 41584411 to 41584415 4 + TSS region transcription start site region 84529
Tssr84530 9 41585391 to 41585398 7 + TSS region transcription start site region 84530
Tssr84531 9 41586485 to 41586512 27 + TSS region transcription start site region 84531
Tssr84532 9 41587431 to 41587437 6 + TSS region transcription start site region 84532
Tssr84533 9 41588374 to 41588382 8 + TSS region transcription start site region 84533
Tssr84534 9 41591741 to 41591764 23 + TSS region transcription start site region 84534
Tssr84535 9 41600132 to 41600150 18 + TSS region transcription start site region 84535
Gm48737 9 41618992 to 41621303 2311 + unclassified gene predicted gene, 48737
Gm8707 9 41654285 to 41655474 1189 + pseudogene predicted gene 8707
Gm48784 9 41659164 to 41675054 15890 - lincRNA gene predicted gene, 48784
Gm35835 9 41680147 to 41737398 57251 - lincRNA gene predicted gene, 35835
Tssr88998 9 41687837 to 41687845 8 - TSS region transcription start site region 88998
Gm46143 9 41760332 to 41765145 4813 + lncRNA gene predicted gene, 46143
6720432D03Rik 9 41803159 to 41805683 2524 - lncRNA gene RIKEN cDNA 6720432D03 gene
Gm35940 9 41804553 to 41834517 29964 + lncRNA gene predicted gene, 35940
Gm36032 9 41852138 to 41876283 24145 - lncRNA gene predicted gene, 36032
Tssr2833 9 41876197 to 41876205 8 - TSS region transcription start site region 2833
Tssr88999 9 41876213 to 41876218 5 - TSS region transcription start site region 88999
Gm48814 9 41876319 to 41879401 3082 + bidirectional promoter lncRNA gene predicted gene, 48814
Tssr84536 9 41885232 to 41885237 5 + TSS region transcription start site region 84536
Gm40513 9 41886627 to 41890549 3922 - lincRNA gene predicted gene, 40513
D9Mit328 9 41887849 to 41888030 181 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 328
Cpgi21613 9 41890287 to 41890870 583 CpG island CpG island 21613
Gm36170 9 41890583 to 41892399 1816 + lncRNA gene predicted gene, 36170
Gm40514 9 41906023 to 41910606 4583 - protein coding gene predicted gene, 40514
Gm36227 9 41911949 to 41919313 7364 - lncRNA gene predicted gene, 36227
Tssr89000 9 41934051 to 41934053 2 - TSS region transcription start site region 89000
Cpgi21614 9 41935738 to 41935929 191 CpG island CpG island 21614
Cpgi21615 9 41950633 to 41951475 842 CpG island CpG island 21615
Sorl1 9 41964718 to 42124289 159571 - protein coding gene sortilin-related receptor, LDLR class A repeats-containing
Tssr89001 9 41985633 to 41985647 14 - TSS region transcription start site region 89001
Tssr89002 9 41985789 to 41985799 10 - TSS region transcription start site region 89002
Tssr89003 9 41988239 to 41988269 30 - TSS region transcription start site region 89003
D9Bwg1411e 9 41995328 to 41995596 268 DNA segment DNA segment, Chr 9, Brigham & Women's Genetics 1411 expressed