Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40653906-40784986

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
D9Mit285 9 40654494 to 40654618 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 285
Gm39319 9 40663495 to 40666505 3010 - lncRNA gene predicted gene, 39319
Gm35371 9 40667960 to 40669107 1147 - lincRNA gene predicted gene, 35371
Gm21915 9 40670613 to 40671014 401 + protein coding gene predicted gene, 21915
Gm48288 9 40679645 to 40680407 762 - pseudogene predicted gene, 48288
Cpgi21597 9 40685733 to 40686726 993 CpG island CpG island 21597
Tssr84456 9 40685954 to 40685976 22 + TSS region transcription start site region 84456
Clmp 9 40685962 to 40785319 99357 + protein coding gene CXADR-like membrane protein
Tssr84457 9 40685988 to 40685999 11 + TSS region transcription start site region 84457
Tssr84458 9 40686002 to 40686059 57 + TSS region transcription start site region 84458
Tssr84459 9 40687842 to 40687853 11 + TSS region transcription start site region 84459
Tssr88967 9 40687906 to 40687911 5 - TSS region transcription start site region 88967
Tssr84460 9 40696117 to 40696120 3 + TSS region transcription start site region 84460
Tssr84461 9 40710109 to 40710115 6 + TSS region transcription start site region 84461
Gm48294 9 40715158 to 40720034 4876 + sense intronic lncRNA gene predicted gene, 48294
Gm16095 9 40718906 to 40719986 1080 - antisense lncRNA gene predicted gene 16095
Cpgi21598 9 40730716 to 40731105 389 CpG island CpG island 21598
Tssr84462 9 40730954 to 40730978 24 + TSS region transcription start site region 84462
Tssr84463 9 40731003 to 40731014 11 + TSS region transcription start site region 84463
D9Mit253 9 40734078 to 40734294 216 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 253
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Gm48293 9 40747281 to 40762673 15392 - antisense lncRNA gene predicted gene, 48293
Cpgi21599 9 40757860 to 40758210 350 CpG island CpG island 21599
Tssr84464 9 40770767 to 40770792 25 + TSS region transcription start site region 84464
Cpgi21600 9 40772389 to 40772905 516 CpG island CpG island 21600
Tssr84465 9 40774413 to 40774429 16 + TSS region transcription start site region 84465
Tssr84466 9 40776762 to 40776785 23 + TSS region transcription start site region 84466
Tssr84467 9 40780334 to 40780365 31 + TSS region transcription start site region 84467
Gm16096 9 40780742 to 40784181 3439 - unclassified non-coding RNA gene predicted gene 16096
Tssr84468 9 40781076 to 40781090 14 + TSS region transcription start site region 84468
Tssr84469 9 40781128 to 40781177 49 + TSS region transcription start site region 84469
Cpgi21601 9 40782251 to 40782540 289 CpG island CpG island 21601
Tssr84470 9 40782277 to 40782322 45 + TSS region transcription start site region 84470
Tssr84471 9 40782404 to 40782427 23 + TSS region transcription start site region 84471
Tssr88968 9 40783055 to 40783105 50 - TSS region transcription start site region 88968
Tssr88969 9 40783650 to 40783661 11 - TSS region transcription start site region 88969
Tssr88970 9 40784041 to 40784047 6 - TSS region transcription start site region 88970
Tssr88971 9 40784140 to 40784156 16 - TSS region transcription start site region 88971
Tssr84472 9 40784833 to 40784846 13 + TSS region transcription start site region 84472
Tssr84473 9 40784937 to 40784956 19 + TSS region transcription start site region 84473
Tssr84474 9 40784974 to 40784985 11 + TSS region transcription start site region 84474