Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40440333-40710378

Filter by:
73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Gramd1b 9 40293233 to 40531383 238150 - protein coding gene GRAM domain containing 1B
Tssr88932 9 40449935 to 40449973 38 - TSS region transcription start site region 88932
Tssr88933 9 40450250 to 40450259 9 - TSS region transcription start site region 88933
Tssr84447 9 40450296 to 40450342 46 + TSS region transcription start site region 84447
Tssr84448 9 40450365 to 40450411 46 + TSS region transcription start site region 84448
Cpgi21594 9 40455152 to 40456367 1215 CpG island CpG island 21594
Tssr84449 9 40455293 to 40455321 28 + TSS region transcription start site region 84449
Tssr88934 9 40455342 to 40455384 42 - TSS region transcription start site region 88934
Tssr88935 9 40455418 to 40455435 17 - TSS region transcription start site region 88935
Tssr88936 9 40455443 to 40455456 13 - TSS region transcription start site region 88936
Tssr88937 9 40455506 to 40455520 14 - TSS region transcription start site region 88937
Tssr88938 9 40455774 to 40455777 3 - TSS region transcription start site region 88938
Tssr88939 9 40455781 to 40455812 31 - TSS region transcription start site region 88939
Tssr88940 9 40455837 to 40455844 7 - TSS region transcription start site region 88940
Tssr84450 9 40455891 to 40455910 19 + TSS region transcription start site region 84450
Tssr88941 9 40456119 to 40456133 14 - TSS region transcription start site region 88941
Tssr88942 9 40456137 to 40456148 11 - TSS region transcription start site region 88942
Tssr88943 9 40456152 to 40456176 24 - TSS region transcription start site region 88943
Tssr88944 9 40456195 to 40456224 29 - TSS region transcription start site region 88944
Tssr88945 9 40456230 to 40456241 11 - TSS region transcription start site region 88945
Tssr88946 9 40456312 to 40456337 25 - TSS region transcription start site region 88946
Tssr88947 9 40456340 to 40456366 26 - TSS region transcription start site region 88947
Tssr88948 9 40456387 to 40456396 9 - TSS region transcription start site region 88948
Tssr88949 9 40457472 to 40457485 13 - TSS region transcription start site region 88949
Tssr84451 9 40457655 to 40457658 3 + TSS region transcription start site region 84451
Tssr84452 9 40457683 to 40457713 30 + TSS region transcription start site region 84452
Tssr84453 9 40458424 to 40458429 5 + TSS region transcription start site region 84453
Tssr88950 9 40465584 to 40465595 11 - TSS region transcription start site region 88950
Tssr88951 9 40465634 to 40465664 30 - TSS region transcription start site region 88951
Tssr88952 9 40465683 to 40465699 16 - TSS region transcription start site region 88952
Tssr88953 9 40465713 to 40465734 21 - TSS region transcription start site region 88953
Tssr88954 9 40465741 to 40465764 23 - TSS region transcription start site region 88954
Tssr88955 9 40465802 to 40465811 9 - TSS region transcription start site region 88955
Tssr88956 9 40465818 to 40465825 7 - TSS region transcription start site region 88956
Tssr2831 9 40469763 to 40469769 6 + TSS region transcription start site region 2831
Tssr84454 9 40487662 to 40487685 23 + TSS region transcription start site region 84454
Tssr88957 9 40487673 to 40487677 4 - TSS region transcription start site region 88957
Gm5055 9 40487720 to 40488300 580 + pseudogene predicted gene 5055
Tssr88958 9 40489677 to 40489686 9 - TSS region transcription start site region 88958
Tssr88959 9 40489727 to 40489738 11 - TSS region transcription start site region 88959
Tssr88960 9 40489749 to 40489760 11 - TSS region transcription start site region 88960
Tssr88961 9 40489761 to 40489765 4 - TSS region transcription start site region 88961
D9Mit206.1 9 40508166 to 40508292 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 206.1
Ath29 9 40508298 to 74700643 34192345 QTL atherosclerosis 29
D9Mit206 9 40508298 to 40508395 97 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 206
Tdmq1 9 40508298 to 51897370 11389072 QTL type 2 diabetes modifying QTL 1
Cpgi21595 9 40530980 to 40531674 694 CpG island CpG island 21595
Tssr88962 9 40531103 to 40531127 24 - TSS region transcription start site region 88962
Gm17540 9 40531155 to 40533620 2465 + lincRNA gene predicted gene, 17540
Tssr88963 9 40531291 to 40531306 15 - TSS region transcription start site region 88963
Tssr88964 9 40531316 to 40531334 18 - TSS region transcription start site region 88964
Tssr88965 9 40531362 to 40531390 28 - TSS region transcription start site region 88965
Tssr88966 9 40531461 to 40531473 12 - TSS region transcription start site region 88966
Gm35177 9 40547307 to 40560007 12700 + lincRNA gene predicted gene, 35177
Gm48277 9 40555086 to 40560929 5843 - lincRNA gene predicted gene, 48277
Tssr84455 9 40575333 to 40575378 45 + TSS region transcription start site region 84455
Gm48284 9 40606416 to 40616386 9970 - lincRNA gene predicted gene, 48284
Cpgi21596 9 40608016 to 40608305 289 CpG island CpG island 21596
D9Mit285 9 40654494 to 40654618 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 285
Gm39319 9 40663495 to 40666505 3010 - lncRNA gene predicted gene, 39319
Gm35371 9 40667960 to 40669107 1147 - lincRNA gene predicted gene, 35371
Gm21915 9 40670613 to 40671014 401 + protein coding gene predicted gene, 21915
Gm48288 9 40679645 to 40680407 762 - pseudogene predicted gene, 48288
Cpgi21597 9 40685733 to 40686726 993 CpG island CpG island 21597
Tssr84456 9 40685954 to 40685976 22 + TSS region transcription start site region 84456
Clmp 9 40685962 to 40785319 99357 + protein coding gene CXADR-like membrane protein
Tssr84457 9 40685988 to 40685999 11 + TSS region transcription start site region 84457
Tssr84458 9 40686002 to 40686059 57 + TSS region transcription start site region 84458
Tssr84459 9 40687842 to 40687853 11 + TSS region transcription start site region 84459
Tssr88967 9 40687906 to 40687911 5 - TSS region transcription start site region 88967
Tssr84460 9 40696117 to 40696120 3 + TSS region transcription start site region 84460
Tssr84461 9 40710109 to 40710115 6 + TSS region transcription start site region 84461