Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40340394-40440401

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
1700110K17Rik	9	40333472 to 40343337	9865	+	antisense lncRNA gene	RIKEN cDNA 1700110K17 gene
Tssr88897	9	40341497 to 40341536	39	-	TSS region	transcription start site region 88897
Tssr84446	9	40341553 to 40341590	37	+	TSS region	transcription start site region 84446
Gm48129	9	40341618 to 40342103	485	-	sense intronic lncRNA gene	predicted gene, 48129
Gm48127	9	40342308 to 40342938	630	-	sense intronic lncRNA gene	predicted gene, 48127
Tssr88898	9	40345216 to 40345221	5	-	TSS region	transcription start site region 88898
Tssr88899	9	40345240 to 40345255	15	-	TSS region	transcription start site region 88899
Tssr88900	9	40346115 to 40346131	16	-	TSS region	transcription start site region 88900
Tssr88901	9	40346189 to 40346200	11	-	TSS region	transcription start site region 88901
Tssr88902	9	40346205 to 40346233	28	-	TSS region	transcription start site region 88902
Tssr88903	9	40346295 to 40346337	42	-	TSS region	transcription start site region 88903
Gm48114	9	40363217 to 40366902	3685	-	unclassified gene	predicted gene, 48114
Tssr88904	9	40376121 to 40376139	18	-	TSS region	transcription start site region 88904
Tssr88905	9	40376213 to 40376263	50	-	TSS region	transcription start site region 88905
Tssr88906	9	40376332 to 40376358	26	-	TSS region	transcription start site region 88906
Tssr88907	9	40376359 to 40376415	56	-	TSS region	transcription start site region 88907
Tssr88908	9	40376426 to 40376444	18	-	TSS region	transcription start site region 88908
Tssr88909	9	40376830 to 40376847	17	-	TSS region	transcription start site region 88909
Tssr88910	9	40390394 to 40390401	7	-	TSS region	transcription start site region 88910
Cpgi21593	9	40391506 to 40391770	264		CpG island	CpG island 21593
Tssr88911	9	40392423 to 40392433	10	-	TSS region	transcription start site region 88911
Tssr88912	9	40392435 to 40392482	47	-	TSS region	transcription start site region 88912
Tssr88913	9	40403681 to 40403692	11	-	TSS region	transcription start site region 88913
Tssr88914	9	40407984 to 40407995	11	-	TSS region	transcription start site region 88914
Tssr88915	9	40408023 to 40408028	5	-	TSS region	transcription start site region 88915
Tssr88916	9	40408061 to 40408072	11	-	TSS region	transcription start site region 88916
Tssr2830	9	40408086 to 40408089	3	-	TSS region	transcription start site region 2830
Tssr88917	9	40411731 to 40411734	3	-	TSS region	transcription start site region 88917
Tssr88918	9	40414485 to 40414533	48	-	TSS region	transcription start site region 88918
Tssr88919	9	40423432 to 40423492	60	-	TSS region	transcription start site region 88919
Tssr88920	9	40423638 to 40423654	16	-	TSS region	transcription start site region 88920
Tssr88921	9	40425678 to 40425682	4	-	TSS region	transcription start site region 88921
Tssr88922	9	40430876 to 40430880	4	-	TSS region	transcription start site region 88922
Tssr88923	9	40430952 to 40430971	19	-	TSS region	transcription start site region 88923
Tssr88924	9	40435029 to 40435061	32	-	TSS region	transcription start site region 88924
Tssr88925	9	40435101 to 40435106	5	-	TSS region	transcription start site region 88925
Tssr88926	9	40435145 to 40435153	8	-	TSS region	transcription start site region 88926
Tssr88927	9	40435156 to 40435171	15	-	TSS region	transcription start site region 88927
Tssr88928	9	40435233 to 40435242	9	-	TSS region	transcription start site region 88928
Tssr88929	9	40437190 to 40437204	14	-	TSS region	transcription start site region 88929
Tssr88930	9	40437245 to 40437257	12	-	TSS region	transcription start site region 88930
Tssr88931	9	40437264 to 40437294	30	-	TSS region	transcription start site region 88931