Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40280433-41321891

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241 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Scn3b 9 40269217 to 40291618 22401 + protein coding gene sodium channel, voltage-gated, type III, beta
Tssr84439 9 40286091 to 40286095 4 + TSS region transcription start site region 84439
Gramd1b 9 40293233 to 40531383 238150 - protein coding gene GRAM domain containing 1B
Tssr88880 9 40295074 to 40295109 35 - TSS region transcription start site region 88880
D9Mit153.2 9 40300449 to 40300558 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 153.2
D9Mit153 9 40300517 to 40300626 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 153
Tssr88881 9 40306994 to 40307018 24 - TSS region transcription start site region 88881
Tssr88882 9 40320867 to 40320888 21 - TSS region transcription start site region 88882
Tssr88883 9 40320914 to 40320949 35 - TSS region transcription start site region 88883
Tssr88884 9 40320954 to 40320979 25 - TSS region transcription start site region 88884
Tssr88885 9 40321126 to 40321137 11 - TSS region transcription start site region 88885
Tssr88886 9 40321161 to 40321172 11 - TSS region transcription start site region 88886
Tssr88887 9 40321181 to 40321190 9 - TSS region transcription start site region 88887
Tssr88888 9 40321191 to 40321202 11 - TSS region transcription start site region 88888
Tssr88889 9 40321247 to 40321252 5 - TSS region transcription start site region 88889
Tssr88890 9 40321256 to 40321267 11 - TSS region transcription start site region 88890
Tssr88891 9 40321270 to 40321293 23 - TSS region transcription start site region 88891
Tssr88892 9 40321312 to 40321317 5 - TSS region transcription start site region 88892
Tssr88893 9 40321329 to 40321341 12 - TSS region transcription start site region 88893
Tssr88894 9 40321447 to 40321487 40 - TSS region transcription start site region 88894
Tssr84440 9 40321738 to 40321751 13 + TSS region transcription start site region 84440
Tssr84441 9 40323414 to 40323458 44 + TSS region transcription start site region 84441
Tssr84442 9 40324531 to 40324544 13 + TSS region transcription start site region 84442
Tssr84443 9 40327255 to 40327258 3 + TSS region transcription start site region 84443
Tssr88895 9 40333260 to 40333301 41 - TSS region transcription start site region 88895
Cpgi21592 9 40333420 to 40333677 257 CpG island CpG island 21592
Tssr84444 9 40333452 to 40333463 11 + TSS region transcription start site region 84444
Tssr84445 9 40333470 to 40333473 3 + TSS region transcription start site region 84445
1700110K17Rik 9 40333472 to 40343337 9865 + antisense lncRNA gene RIKEN cDNA 1700110K17 gene
Tssr88896 9 40339580 to 40339612 32 - TSS region transcription start site region 88896
Tssr88897 9 40341497 to 40341536 39 - TSS region transcription start site region 88897
Tssr84446 9 40341553 to 40341590 37 + TSS region transcription start site region 84446
Gm48129 9 40341618 to 40342103 485 - sense intronic lncRNA gene predicted gene, 48129
Gm48127 9 40342308 to 40342938 630 - sense intronic lncRNA gene predicted gene, 48127
Tssr88898 9 40345216 to 40345221 5 - TSS region transcription start site region 88898
Tssr88899 9 40345240 to 40345255 15 - TSS region transcription start site region 88899
Tssr88900 9 40346115 to 40346131 16 - TSS region transcription start site region 88900
Tssr88901 9 40346189 to 40346200 11 - TSS region transcription start site region 88901
Tssr88902 9 40346205 to 40346233 28 - TSS region transcription start site region 88902
Tssr88903 9 40346295 to 40346337 42 - TSS region transcription start site region 88903
Gm48114 9 40363217 to 40366902 3685 - unclassified gene predicted gene, 48114
Tssr88904 9 40376121 to 40376139 18 - TSS region transcription start site region 88904
Tssr88905 9 40376213 to 40376263 50 - TSS region transcription start site region 88905
Tssr88906 9 40376332 to 40376358 26 - TSS region transcription start site region 88906
Tssr88907 9 40376359 to 40376415 56 - TSS region transcription start site region 88907
Tssr88908 9 40376426 to 40376444 18 - TSS region transcription start site region 88908
Tssr88909 9 40376830 to 40376847 17 - TSS region transcription start site region 88909
Tssr88910 9 40390394 to 40390401 7 - TSS region transcription start site region 88910
Cpgi21593 9 40391506 to 40391770 264 CpG island CpG island 21593
Tssr88911 9 40392423 to 40392433 10 - TSS region transcription start site region 88911
Tssr88912 9 40392435 to 40392482 47 - TSS region transcription start site region 88912
Tssr88913 9 40403681 to 40403692 11 - TSS region transcription start site region 88913
Tssr88914 9 40407984 to 40407995 11 - TSS region transcription start site region 88914
Tssr88915 9 40408023 to 40408028 5 - TSS region transcription start site region 88915
Tssr88916 9 40408061 to 40408072 11 - TSS region transcription start site region 88916
Tssr2830 9 40408086 to 40408089 3 - TSS region transcription start site region 2830
Tssr88917 9 40411731 to 40411734 3 - TSS region transcription start site region 88917
Tssr88918 9 40414485 to 40414533 48 - TSS region transcription start site region 88918
Tssr88919 9 40423432 to 40423492 60 - TSS region transcription start site region 88919
Tssr88920 9 40423638 to 40423654 16 - TSS region transcription start site region 88920
Tssr88921 9 40425678 to 40425682 4 - TSS region transcription start site region 88921
Tssr88922 9 40430876 to 40430880 4 - TSS region transcription start site region 88922
Tssr88923 9 40430952 to 40430971 19 - TSS region transcription start site region 88923
Tssr88924 9 40435029 to 40435061 32 - TSS region transcription start site region 88924
Tssr88925 9 40435101 to 40435106 5 - TSS region transcription start site region 88925
Tssr88926 9 40435145 to 40435153 8 - TSS region transcription start site region 88926
Tssr88927 9 40435156 to 40435171 15 - TSS region transcription start site region 88927
Tssr88928 9 40435233 to 40435242 9 - TSS region transcription start site region 88928
Tssr88929 9 40437190 to 40437204 14 - TSS region transcription start site region 88929
Tssr88930 9 40437245 to 40437257 12 - TSS region transcription start site region 88930
Tssr88931 9 40437264 to 40437294 30 - TSS region transcription start site region 88931
Tssr88932 9 40449935 to 40449973 38 - TSS region transcription start site region 88932
Tssr88933 9 40450250 to 40450259 9 - TSS region transcription start site region 88933
Tssr84447 9 40450296 to 40450342 46 + TSS region transcription start site region 84447
Tssr84448 9 40450365 to 40450411 46 + TSS region transcription start site region 84448
Cpgi21594 9 40455152 to 40456367 1215 CpG island CpG island 21594
Tssr84449 9 40455293 to 40455321 28 + TSS region transcription start site region 84449
Tssr88934 9 40455342 to 40455384 42 - TSS region transcription start site region 88934
Tssr88935 9 40455418 to 40455435 17 - TSS region transcription start site region 88935
Tssr88936 9 40455443 to 40455456 13 - TSS region transcription start site region 88936
Tssr88937 9 40455506 to 40455520 14 - TSS region transcription start site region 88937
Tssr88938 9 40455774 to 40455777 3 - TSS region transcription start site region 88938
Tssr88939 9 40455781 to 40455812 31 - TSS region transcription start site region 88939
Tssr88940 9 40455837 to 40455844 7 - TSS region transcription start site region 88940
Tssr84450 9 40455891 to 40455910 19 + TSS region transcription start site region 84450
Tssr88941 9 40456119 to 40456133 14 - TSS region transcription start site region 88941
Tssr88942 9 40456137 to 40456148 11 - TSS region transcription start site region 88942
Tssr88943 9 40456152 to 40456176 24 - TSS region transcription start site region 88943
Tssr88944 9 40456195 to 40456224 29 - TSS region transcription start site region 88944
Tssr88945 9 40456230 to 40456241 11 - TSS region transcription start site region 88945
Tssr88946 9 40456312 to 40456337 25 - TSS region transcription start site region 88946
Tssr88947 9 40456340 to 40456366 26 - TSS region transcription start site region 88947
Tssr88948 9 40456387 to 40456396 9 - TSS region transcription start site region 88948
Tssr88949 9 40457472 to 40457485 13 - TSS region transcription start site region 88949
Tssr84451 9 40457655 to 40457658 3 + TSS region transcription start site region 84451
Tssr84452 9 40457683 to 40457713 30 + TSS region transcription start site region 84452
Tssr84453 9 40458424 to 40458429 5 + TSS region transcription start site region 84453
Tssr88950 9 40465584 to 40465595 11 - TSS region transcription start site region 88950
Tssr88951 9 40465634 to 40465664 30 - TSS region transcription start site region 88951
Tssr88952 9 40465683 to 40465699 16 - TSS region transcription start site region 88952
Tssr88953 9 40465713 to 40465734 21 - TSS region transcription start site region 88953
Tssr88954 9 40465741 to 40465764 23 - TSS region transcription start site region 88954
Tssr88955 9 40465802 to 40465811 9 - TSS region transcription start site region 88955
Tssr88956 9 40465818 to 40465825 7 - TSS region transcription start site region 88956
Tssr2831 9 40469763 to 40469769 6 + TSS region transcription start site region 2831
Tssr84454 9 40487662 to 40487685 23 + TSS region transcription start site region 84454
Tssr88957 9 40487673 to 40487677 4 - TSS region transcription start site region 88957
Gm5055 9 40487720 to 40488300 580 + pseudogene predicted gene 5055
Tssr88958 9 40489677 to 40489686 9 - TSS region transcription start site region 88958
Tssr88959 9 40489727 to 40489738 11 - TSS region transcription start site region 88959
Tssr88960 9 40489749 to 40489760 11 - TSS region transcription start site region 88960
Tssr88961 9 40489761 to 40489765 4 - TSS region transcription start site region 88961
D9Mit206.1 9 40508166 to 40508292 126 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 206.1
Ath29 9 40508298 to 74700643 34192345 QTL atherosclerosis 29
D9Mit206 9 40508298 to 40508395 97 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 206
Tdmq1 9 40508298 to 51897370 11389072 QTL type 2 diabetes modifying QTL 1
Cpgi21595 9 40530980 to 40531674 694 CpG island CpG island 21595
Tssr88962 9 40531103 to 40531127 24 - TSS region transcription start site region 88962
Gm17540 9 40531155 to 40533620 2465 + lincRNA gene predicted gene, 17540
Tssr88963 9 40531291 to 40531306 15 - TSS region transcription start site region 88963
Tssr88964 9 40531316 to 40531334 18 - TSS region transcription start site region 88964
Tssr88965 9 40531362 to 40531390 28 - TSS region transcription start site region 88965
Tssr88966 9 40531461 to 40531473 12 - TSS region transcription start site region 88966
Gm35177 9 40547307 to 40560007 12700 + lincRNA gene predicted gene, 35177
Gm48277 9 40555086 to 40560929 5843 - lincRNA gene predicted gene, 48277
Tssr84455 9 40575333 to 40575378 45 + TSS region transcription start site region 84455
Gm48284 9 40606416 to 40616386 9970 - lincRNA gene predicted gene, 48284
Cpgi21596 9 40608016 to 40608305 289 CpG island CpG island 21596
D9Mit285 9 40654494 to 40654618 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 285
Gm39319 9 40663495 to 40666505 3010 - lncRNA gene predicted gene, 39319
Gm35371 9 40667960 to 40669107 1147 - lincRNA gene predicted gene, 35371
Gm21915 9 40670613 to 40671014 401 + protein coding gene predicted gene, 21915
Gm48288 9 40679645 to 40680407 762 - pseudogene predicted gene, 48288
Cpgi21597 9 40685733 to 40686726 993 CpG island CpG island 21597
Tssr84456 9 40685954 to 40685976 22 + TSS region transcription start site region 84456
Clmp 9 40685962 to 40785319 99357 + protein coding gene CXADR-like membrane protein
Tssr84457 9 40685988 to 40685999 11 + TSS region transcription start site region 84457
Tssr84458 9 40686002 to 40686059 57 + TSS region transcription start site region 84458
Tssr84459 9 40687842 to 40687853 11 + TSS region transcription start site region 84459
Tssr88967 9 40687906 to 40687911 5 - TSS region transcription start site region 88967
Tssr84460 9 40696117 to 40696120 3 + TSS region transcription start site region 84460
Tssr84461 9 40710109 to 40710115 6 + TSS region transcription start site region 84461
Gm48294 9 40715158 to 40720034 4876 + sense intronic lncRNA gene predicted gene, 48294
Gm16095 9 40718906 to 40719986 1080 - antisense lncRNA gene predicted gene 16095
Cpgi21598 9 40730716 to 40731105 389 CpG island CpG island 21598
Tssr84462 9 40730954 to 40730978 24 + TSS region transcription start site region 84462
Tssr84463 9 40731003 to 40731014 11 + TSS region transcription start site region 84463
D9Mit253 9 40734078 to 40734294 216 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 253
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Gm48293 9 40747281 to 40762673 15392 - antisense lncRNA gene predicted gene, 48293
Cpgi21599 9 40757860 to 40758210 350 CpG island CpG island 21599
Tssr84464 9 40770767 to 40770792 25 + TSS region transcription start site region 84464
Cpgi21600 9 40772389 to 40772905 516 CpG island CpG island 21600
Tssr84465 9 40774413 to 40774429 16 + TSS region transcription start site region 84465
Tssr84466 9 40776762 to 40776785 23 + TSS region transcription start site region 84466
Tssr84467 9 40780334 to 40780365 31 + TSS region transcription start site region 84467
Gm16096 9 40780742 to 40784181 3439 - unclassified non-coding RNA gene predicted gene 16096
Tssr84468 9 40781076 to 40781090 14 + TSS region transcription start site region 84468
Tssr84469 9 40781128 to 40781177 49 + TSS region transcription start site region 84469
Cpgi21601 9 40782251 to 40782540 289 CpG island CpG island 21601
Tssr84470 9 40782277 to 40782322 45 + TSS region transcription start site region 84470
Tssr84471 9 40782404 to 40782427 23 + TSS region transcription start site region 84471
Tssr88968 9 40783055 to 40783105 50 - TSS region transcription start site region 88968
Tssr88969 9 40783650 to 40783661 11 - TSS region transcription start site region 88969
Tssr88970 9 40784041 to 40784047 6 - TSS region transcription start site region 88970
Tssr88971 9 40784140 to 40784156 16 - TSS region transcription start site region 88971
Tssr84472 9 40784833 to 40784846 13 + TSS region transcription start site region 84472
Tssr84473 9 40784937 to 40784956 19 + TSS region transcription start site region 84473
Tssr84474 9 40784974 to 40784985 11 + TSS region transcription start site region 84474
Tssr84475 9 40784992 to 40785021 29 + TSS region transcription start site region 84475
Tssr84476 9 40785069 to 40785108 39 + TSS region transcription start site region 84476
Tssr84477 9 40794538 to 40794562 24 + TSS region transcription start site region 84477
Tssr84478 9 40798465 to 40798491 26 + TSS region transcription start site region 84478
Tssr84479 9 40799326 to 40799366 40 + TSS region transcription start site region 84479
Cpgi21602 9 40799988 to 40800156 168 CpG island CpG island 21602
Tssr84480 9 40800088 to 40800106 18 + TSS region transcription start site region 84480
Cpgi21603 9 40800433 to 40801891 1458 CpG island CpG island 21603
Tssr88972 9 40800762 to 40800786 24 - TSS region transcription start site region 88972
Tssr84481 9 40801266 to 40801284 18 + TSS region transcription start site region 84481
Hspa8 9 40801273 to 40805199 3926 + protein coding gene heat shock protein 8
Tssr84482 9 40801905 to 40801913 8 + TSS region transcription start site region 84482
Tssr84483 9 40802366 to 40802369 3 + TSS region transcription start site region 84483
Tssr84484 9 40802625 to 40802656 31 + TSS region transcription start site region 84484
Snord14c 9 40803583 to 40803668 85 + snoRNA gene small nucleolar RNA, C/D box 14C
Snord14d 9 40803995 to 40804080 85 + snoRNA gene small nucleolar RNA, C/D box 14D
Tssr84485 9 40804224 to 40804235 11 + TSS region transcription start site region 84485
Tssr84486 9 40804739 to 40804751 12 + TSS region transcription start site region 84486
Snord14e 9 40804748 to 40804837 89 + snoRNA gene small nucleolar RNA, C/D box 14E
Tssr84487 9 40806638 to 40806642 4 + TSS region transcription start site region 84487
Tssr84488 9 40809251 to 40809255 4 + TSS region transcription start site region 84488
Gm48565 9 40820969 to 40822673 1704 + unclassified gene predicted gene, 48565
Cpgi21604 9 40871658 to 40872132 474 CpG island CpG island 21604
Tssr84489 9 40873981 to 40873998 17 + TSS region transcription start site region 84489
Bsx 9 40874127 to 40878962 4835 + protein coding gene brain specific homeobox
Cpgi21605 9 40875585 to 40875800 215 CpG island CpG island 21605
Cpgi21606 9 40876162 to 40876599 437 CpG island CpG island 21606
Cpgi21607 9 40877509 to 40878857 1348 CpG island CpG island 21607
Jhy 9 40894849 to 40964118 69269 - protein coding gene junctional cadherin complex regulator
Gm18586 9 40929909 to 40930426 517 - pseudogene predicted gene, 18586