Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40241618-40442103

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21590 9 40241748 to 40241920 172 CpG island CpG island 21590
Cpgi21591 9 40269073 to 40269814 741 CpG island CpG island 21591
Tssr84432 9 40269202 to 40269265 63 + TSS region transcription start site region 84432
Scn3b 9 40269217 to 40291618 22401 + protein coding gene sodium channel, voltage-gated, type III, beta
Tssr84433 9 40269274 to 40269303 29 + TSS region transcription start site region 84433
Tssr84434 9 40269354 to 40269366 12 + TSS region transcription start site region 84434
Tssr84435 9 40269379 to 40269423 44 + TSS region transcription start site region 84435
Tssr84436 9 40269430 to 40269441 11 + TSS region transcription start site region 84436
Tssr84437 9 40269451 to 40269472 21 + TSS region transcription start site region 84437
Tssr84438 9 40269473 to 40269496 23 + TSS region transcription start site region 84438
Gm47266 9 40275903 to 40276532 629 - unclassified gene predicted gene, 47266
Tssr84439 9 40286091 to 40286095 4 + TSS region transcription start site region 84439
Gramd1b 9 40293233 to 40531383 238150 - protein coding gene GRAM domain containing 1B
Tssr88880 9 40295074 to 40295109 35 - TSS region transcription start site region 88880
D9Mit153.2 9 40300449 to 40300558 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 153.2
D9Mit153 9 40300517 to 40300626 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 153
Tssr88881 9 40306994 to 40307018 24 - TSS region transcription start site region 88881
Tssr88882 9 40320867 to 40320888 21 - TSS region transcription start site region 88882
Tssr88883 9 40320914 to 40320949 35 - TSS region transcription start site region 88883
Tssr88884 9 40320954 to 40320979 25 - TSS region transcription start site region 88884
Tssr88885 9 40321126 to 40321137 11 - TSS region transcription start site region 88885
Tssr88886 9 40321161 to 40321172 11 - TSS region transcription start site region 88886
Tssr88887 9 40321181 to 40321190 9 - TSS region transcription start site region 88887
Tssr88888 9 40321191 to 40321202 11 - TSS region transcription start site region 88888
Tssr88889 9 40321247 to 40321252 5 - TSS region transcription start site region 88889
Tssr88890 9 40321256 to 40321267 11 - TSS region transcription start site region 88890
Tssr88891 9 40321270 to 40321293 23 - TSS region transcription start site region 88891
Tssr88892 9 40321312 to 40321317 5 - TSS region transcription start site region 88892
Tssr88893 9 40321329 to 40321341 12 - TSS region transcription start site region 88893
Tssr88894 9 40321447 to 40321487 40 - TSS region transcription start site region 88894
Tssr84440 9 40321738 to 40321751 13 + TSS region transcription start site region 84440
Tssr84441 9 40323414 to 40323458 44 + TSS region transcription start site region 84441
Tssr84442 9 40324531 to 40324544 13 + TSS region transcription start site region 84442
Tssr84443 9 40327255 to 40327258 3 + TSS region transcription start site region 84443
Tssr88895 9 40333260 to 40333301 41 - TSS region transcription start site region 88895
Cpgi21592 9 40333420 to 40333677 257 CpG island CpG island 21592
Tssr84444 9 40333452 to 40333463 11 + TSS region transcription start site region 84444
Tssr84445 9 40333470 to 40333473 3 + TSS region transcription start site region 84445
1700110K17Rik 9 40333472 to 40343337 9865 + antisense lncRNA gene RIKEN cDNA 1700110K17 gene
Tssr88896 9 40339580 to 40339612 32 - TSS region transcription start site region 88896
Tssr88897 9 40341497 to 40341536 39 - TSS region transcription start site region 88897
Tssr84446 9 40341553 to 40341590 37 + TSS region transcription start site region 84446
Gm48129 9 40341618 to 40342103 485 - sense intronic lncRNA gene predicted gene, 48129
Gm48127 9 40342308 to 40342938 630 - sense intronic lncRNA gene predicted gene, 48127
Tssr88898 9 40345216 to 40345221 5 - TSS region transcription start site region 88898
Tssr88899 9 40345240 to 40345255 15 - TSS region transcription start site region 88899
Tssr88900 9 40346115 to 40346131 16 - TSS region transcription start site region 88900
Tssr88901 9 40346189 to 40346200 11 - TSS region transcription start site region 88901
Tssr88902 9 40346205 to 40346233 28 - TSS region transcription start site region 88902
Tssr88903 9 40346295 to 40346337 42 - TSS region transcription start site region 88903
Gm48114 9 40363217 to 40366902 3685 - unclassified gene predicted gene, 48114
Tssr88904 9 40376121 to 40376139 18 - TSS region transcription start site region 88904
Tssr88905 9 40376213 to 40376263 50 - TSS region transcription start site region 88905
Tssr88906 9 40376332 to 40376358 26 - TSS region transcription start site region 88906
Tssr88907 9 40376359 to 40376415 56 - TSS region transcription start site region 88907
Tssr88908 9 40376426 to 40376444 18 - TSS region transcription start site region 88908
Tssr88909 9 40376830 to 40376847 17 - TSS region transcription start site region 88909
Tssr88910 9 40390394 to 40390401 7 - TSS region transcription start site region 88910
Cpgi21593 9 40391506 to 40391770 264 CpG island CpG island 21593
Tssr88911 9 40392423 to 40392433 10 - TSS region transcription start site region 88911
Tssr88912 9 40392435 to 40392482 47 - TSS region transcription start site region 88912
Tssr88913 9 40403681 to 40403692 11 - TSS region transcription start site region 88913
Tssr88914 9 40407984 to 40407995 11 - TSS region transcription start site region 88914
Tssr88915 9 40408023 to 40408028 5 - TSS region transcription start site region 88915
Tssr88916 9 40408061 to 40408072 11 - TSS region transcription start site region 88916
Tssr2830 9 40408086 to 40408089 3 - TSS region transcription start site region 2830
Tssr88917 9 40411731 to 40411734 3 - TSS region transcription start site region 88917
Tssr88918 9 40414485 to 40414533 48 - TSS region transcription start site region 88918
Tssr88919 9 40423432 to 40423492 60 - TSS region transcription start site region 88919
Tssr88920 9 40423638 to 40423654 16 - TSS region transcription start site region 88920
Tssr88921 9 40425678 to 40425682 4 - TSS region transcription start site region 88921
Tssr88922 9 40430876 to 40430880 4 - TSS region transcription start site region 88922
Tssr88923 9 40430952 to 40430971 19 - TSS region transcription start site region 88923
Tssr88924 9 40435029 to 40435061 32 - TSS region transcription start site region 88924
Tssr88925 9 40435101 to 40435106 5 - TSS region transcription start site region 88925
Tssr88926 9 40435145 to 40435153 8 - TSS region transcription start site region 88926
Tssr88927 9 40435156 to 40435171 15 - TSS region transcription start site region 88927
Tssr88928 9 40435233 to 40435242 9 - TSS region transcription start site region 88928
Tssr88929 9 40437190 to 40437204 14 - TSS region transcription start site region 88929
Tssr88930 9 40437245 to 40437257 12 - TSS region transcription start site region 88930
Tssr88931 9 40437264 to 40437294 30 - TSS region transcription start site region 88931