Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:38604362-47648572

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1624 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Olfr914 9 38605129 to 38607417 2288 + protein coding gene olfactory receptor 914
Olfr915 9 38646590 to 38647522 932 - polymorphic pseudogene olfactory receptor 915
Gm49385 9 38647486 to 38658393 10907 - polymorphic pseudogene predicted gene, 49385
Olfr916 9 38657458 to 38659875 2417 - protein coding gene olfactory receptor 916
Gm47449 9 38662817 to 38663236 419 - pseudogene predicted gene, 47449
Olfr917 9 38664913 to 38665842 929 - protein coding gene olfactory receptor 917
Gm47458 9 38668636 to 38669059 423 - pseudogene predicted gene, 47458
Olfr918 9 38672504 to 38673481 977 - protein coding gene olfactory receptor 918
Gm5010 9 38678609 to 38679205 596 - pseudogene predicted gene 5010
Olfr919 9 38697429 to 38698376 947 - protein coding gene olfactory receptor 919
Tssr84417 9 38718263 to 38718277 14 + TSS region transcription start site region 84417
Vwa5a 9 38718268 to 38743337 25069 + protein coding gene von Willebrand factor A domain containing 5A
Tssr84418 9 38718281 to 38718326 45 + TSS region transcription start site region 84418
Tssr84419 9 38718328 to 38718341 13 + TSS region transcription start site region 84419
Tssr84420 9 38719024 to 38719055 31 + TSS region transcription start site region 84420
Tssr84421 9 38730702 to 38730704 2 + TSS region transcription start site region 84421
Tssr84422 9 38731001 to 38731015 14 + TSS region transcription start site region 84422
Tssr84423 9 38731190 to 38731248 58 + TSS region transcription start site region 84423
Tssr84424 9 38742469 to 38742473 4 + TSS region transcription start site region 84424
Olfr920 9 38752796 to 38756863 4067 + protein coding gene olfactory receptor 920
Gm47347 9 38762909 to 38765644 2735 + pseudogene predicted gene, 47347
Olfr921 9 38773088 to 38776354 3266 + protein coding gene olfactory receptor 921
Gm19709 9 38786290 to 38786771 481 - pseudogene predicted gene, 19709
D9Mit1013 9 38791663 to 38791811 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1013
Olfr922 9 38815408 to 38816539 1131 + protein coding gene olfactory receptor 922
Olfr923 9 38827615 to 38828682 1067 + protein coding gene olfactory receptor 923
Olfr924 9 38848116 to 38849042 926 + protein coding gene olfactory receptor 924
Olfr26 9 38855060 to 38855990 930 + protein coding gene olfactory receptor 26
Olfr925-ps1 9 38868866 to 38869645 779 + pseudogene olfactory receptor 925, pseudogene 1
Olfr926 9 38877178 to 38878104 926 + protein coding gene olfactory receptor 926
Olfr927-ps1 9 38892240 to 38893021 781 - pseudogene olfactory receptor 927, pseudogene 1
Olfr928-ps1 9 38895580 to 38895816 236 + pseudogene olfactory receptor 928, pseudogene 1
Olfr929-ps1 9 38907173 to 38907847 674 - pseudogene olfactory receptor 929, pseudogene 1
Olfr930 9 38930173 to 38931099 926 + protein coding gene olfactory receptor 930
Gm20953 9 38937489 to 38940102 2613 - pseudogene predicted gene, 20953
Olfr931-ps1 9 38945167 to 38945715 548 - pseudogene olfactory receptor 931, pseudogene 1
Olfr1545-ps1 9 38946855 to 38947546 691 + pseudogene olfactory receptor 1545, pseudogene 1
Olfr932-ps1 9 38948974 to 38949243 269 + pseudogene olfactory receptor 932, pseudogene 1
Olfr933 9 38972313 to 38976604 4291 + protein coding gene olfactory receptor 933
Tssr2829 9 38972371 to 38972375 4 + TSS region transcription start site region 2829
Olfr934 9 38982110 to 38983042 932 - protein coding gene olfactory receptor 934
Olfr935 9 38994507 to 38995433 926 - protein coding gene olfactory receptor 935
Olfr146 9 39018619 to 39023377 4758 - protein coding gene olfactory receptor 146
Olfr936 9 39046614 to 39047549 935 - polymorphic pseudogene olfactory receptor 936
Gm25529 9 39048558 to 39048649 91 - miRNA gene predicted gene, 25529
Olfr937 9 39059729 to 39061229 1500 - protein coding gene olfactory receptor 937
Tssr84425 9 39074023 to 39074031 8 + TSS region transcription start site region 84425
Gm8543 9 39074102 to 39075735 1633 + pseudogene predicted gene 8543
Gm25032 9 39075411 to 39075494 83 + miRNA gene predicted gene, 25032
Olfr938 9 39077796 to 39078743 947 - protein coding gene olfactory receptor 938
Olfr939-ps1 9 39084496 to 39084852 356 - pseudogene olfactory receptor 939, pseudogene 1
Olfr940-ps1 9 39092775 to 39093229 454 - pseudogene olfactory receptor 940, pseudogene 1
Gm47085 9 39096967 to 39097615 648 + pseudogene predicted gene, 47085
Olfr941-ps1 9 39104049 to 39104983 934 - pseudogene olfactory receptor 941, pseudogene 1
Olfr27 9 39128167 to 39145072 16905 + protein coding gene olfactory receptor 27
Olfr942-ps1 9 39158924 to 39159923 999 + pseudogene olfactory receptor 942, pseudogene 1
Olfr943 9 39166310 to 39185124 18814 + protein coding gene olfactory receptor 943
Gm47100 9 39189003 to 39189152 149 - pseudogene predicted gene, 47100
Olfr944 9 39217359 to 39218294 935 + protein coding gene olfactory receptor 944
Olfr1537 9 39237487 to 39238431 944 - protein coding gene olfactory receptor 1537
Olfr945 9 39257720 to 39258679 959 - protein coding gene olfactory receptor 945
Olfr946-ps1 9 39284296 to 39284636 340 - pseudogene olfactory receptor 946, pseudogene 1
Olfr947-ps1 9 39287924 to 39299481 11557 - polymorphic pseudogene olfactory receptor 947, pseudogene 1
Olfr948 9 39318647 to 39319612 965 - protein coding gene olfactory receptor 948
Gm21041 9 39326731 to 39327879 1148 + pseudogene predicted gene, 21041
Olfr949-ps1 9 39364552 to 39365480 928 + polymorphic pseudogene olfactory receptor 949, pseudogene 1
Olfr950-ps1 9 39383330 to 39384279 949 + pseudogene olfactory receptor 950, pseudogene 1
Olfr951 9 39393793 to 39394737 944 + protein coding gene olfactory receptor 951
Olfr952 9 39426125 to 39427069 944 - protein coding gene olfactory receptor 952
Olfr953-ps1 9 39452295 to 39453250 955 + pseudogene olfactory receptor 953, pseudogene 1
Olfr954 9 39461433 to 39462377 944 + protein coding gene olfactory receptor 954
Olfr955 9 39469780 to 39470724 944 - protein coding gene olfactory receptor 955
Olfr956-ps1 9 39473774 to 39474602 828 - pseudogene olfactory receptor 956, pseudogene 1
Olfr44 9 39484087 to 39493988 9901 - protein coding gene olfactory receptor 44
Olfr957 9 39510783 to 39511718 935 - protein coding gene olfactory receptor 957
Gm24278 9 39537826 to 39537952 126 - snoRNA gene predicted gene, 24278
Olfr958 9 39549931 to 39550869 938 - protein coding gene olfactory receptor 958
Olfr959 9 39572322 to 39573257 935 - protein coding gene olfactory receptor 959
D9Mit327 9 39584209 to 39584333 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 327
AW551984 9 39587396 to 39604403 17007 - protein coding gene expressed sequence AW551984
Tssr88871 9 39603551 to 39603603 52 - TSS region transcription start site region 88871
Tssr88872 9 39603608 to 39603632 24 - TSS region transcription start site region 88872
Tssr88873 9 39603635 to 39603646 11 - TSS region transcription start site region 88873
Tssr88874 9 39604259 to 39604276 17 - TSS region transcription start site region 88874
Olfr148 9 39613569 to 39614501 932 + protein coding gene olfactory receptor 148
Olfr960 9 39623125 to 39624165 1040 + protein coding gene olfactory receptor 960
Olfr961 9 39646728 to 39647672 944 + protein coding gene olfactory receptor 961
Olfr962-ps1 9 39658301 to 39658742 441 + pseudogene olfactory receptor 962, pseudogene 1
Olfr963 9 39669059 to 39669994 935 + protein coding gene olfactory receptor 963
Olfr964-ps1 9 39686029 to 39686942 913 - polymorphic pseudogene olfactory receptor 964, pseudogene 1
D9Mit1001 9 39695094 to 39695213 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1001
Olfr149 9 39701832 to 39702767 935 - protein coding gene olfactory receptor 149
Olfr965 9 39719229 to 39720167 938 + protein coding gene olfactory receptor 965
Olfr966-ps1 9 39723965 to 39724541 576 + pseudogene olfactory receptor 966, pseudogene 1
Ebao1 9 39724362 to 46528572 6804210 QTL epidermolysis bullosa acquisita onset 1
Olfr150 9 39736817 to 39737755 938 + protein coding gene olfactory receptor 150
Olfr967 9 39750388 to 39751320 932 + protein coding gene olfactory receptor 967
Olfr968 9 39771772 to 39772798 1026 - protein coding gene olfactory receptor 968
Olfr969 9 39791025 to 39796617 5592 + protein coding gene olfactory receptor 969
Olfr970 9 39819641 to 39820576 935 + protein coding gene olfactory receptor 970
Gm47219 9 39821705 to 39821803 98 + pseudogene predicted gene, 47219
Olfr971 9 39839436 to 39840359 923 + protein coding gene olfactory receptor 971
Olfr972 9 39873277 to 39874221 944 + protein coding gene olfactory receptor 972
Olfr229 9 39909805 to 39910728 923 + protein coding gene olfactory receptor 229
Gm47229 9 39918271 to 39918519 248 - pseudogene predicted gene, 47229
Olfr974 9 39942059 to 39943194 1135 + protein coding gene olfactory receptor 974
Olfr975 9 39949837 to 39950769 932 - protein coding gene olfactory receptor 975
Olfr976 9 39954257 to 39961044 6787 - protein coding gene olfactory receptor 976
Olfr977-ps1 9 39973879 to 39974821 942 - polymorphic pseudogene olfactory receptor 977, pseudogene 1
Olfr978 9 39993812 to 39994747 935 + protein coding gene olfactory receptor 978
Olfr979 9 40000206 to 40001250 1044 - protein coding gene olfactory receptor 979
Olfr980 9 40005994 to 40007029 1035 - protein coding gene olfactory receptor 980
Olfr981 9 40022395 to 40023327 932 + protein coding gene olfactory receptor 981
Tssr88875 9 40032501 to 40032506 5 - TSS region transcription start site region 88875
Gm18892 9 40039891 to 40040771 880 + pseudogene predicted gene, 18892
Tssr84426 9 40050360 to 40050382 22 + TSS region transcription start site region 84426
Tssr84427 9 40050388 to 40050409 21 + TSS region transcription start site region 84427
Tssr84428 9 40050419 to 40050424 5 + TSS region transcription start site region 84428
1700001J11Rik 9 40050558 to 40053025 2467 + pseudogene RIKEN cDNA 1700001J11 gene
Olfr982 9 40074297 to 40075262 965 + protein coding gene olfactory receptor 982
Cpgi21588 9 40074866 to 40075109 243 CpG island CpG island 21588
Olfr983 9 40092017 to 40093558 1541 - protein coding gene olfactory receptor 983
Olfr984 9 40100544 to 40101488 944 - protein coding gene olfactory receptor 984
Olfr985 9 40126924 to 40128039 1115 - protein coding gene olfactory receptor 985
Gm35123 9 40136313 to 40143867 7554 + lncRNA gene predicted gene, 35123
Tssr84429 9 40148112 to 40148132 20 + TSS region transcription start site region 84429
Tmem225 9 40148122 to 40150880 2758 + protein coding gene transmembrane protein 225
Tssr84430 9 40148156 to 40148165 9 + TSS region transcription start site region 84430
Gm4893 9 40164343 to 40165027 684 + pseudogene predicted gene 4893
Olfr986 9 40187079 to 40188094 1015 + protein coding gene olfactory receptor 986
Tssr88876 9 40189509 to 40189514 5 - TSS region transcription start site region 88876
Tssr88877 9 40191121 to 40191125 4 - TSS region transcription start site region 88877
Cpgi21589 9 40192104 to 40193006 902 CpG island CpG island 21589
Tssr84431 9 40192308 to 40192337 29 + TSS region transcription start site region 84431
Zfp202 9 40192316 to 40213604 21288 + protein coding gene zinc finger protein 202
Tssr88878 9 40239872 to 40239885 13 - TSS region transcription start site region 88878
Tssr88879 9 40239897 to 40239921 24 - TSS region transcription start site region 88879
Cpgi21590 9 40241748 to 40241920 172 CpG island CpG island 21590
Cpgi21591 9 40269073 to 40269814 741 CpG island CpG island 21591
Tssr84432 9 40269202 to 40269265 63 + TSS region transcription start site region 84432
Scn3b 9 40269217 to 40291618 22401 + protein coding gene sodium channel, voltage-gated, type III, beta
Tssr84433 9 40269274 to 40269303 29 + TSS region transcription start site region 84433
Tssr84434 9 40269354 to 40269366 12 + TSS region transcription start site region 84434
Tssr84435 9 40269379 to 40269423 44 + TSS region transcription start site region 84435
Tssr84436 9 40269430 to 40269441 11 + TSS region transcription start site region 84436
Tssr84437 9 40269451 to 40269472 21 + TSS region transcription start site region 84437
Tssr84438 9 40269473 to 40269496 23 + TSS region transcription start site region 84438
Gm47266 9 40275903 to 40276532 629 - unclassified gene predicted gene, 47266
Tssr84439 9 40286091 to 40286095 4 + TSS region transcription start site region 84439
Gramd1b 9 40293233 to 40531383 238150 - protein coding gene GRAM domain containing 1B
Tssr88880 9 40295074 to 40295109 35 - TSS region transcription start site region 88880
D9Mit153.2 9 40300449 to 40300558 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 153.2
D9Mit153 9 40300517 to 40300626 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 153
Tssr88881 9 40306994 to 40307018 24 - TSS region transcription start site region 88881
Tssr88882 9 40320867 to 40320888 21 - TSS region transcription start site region 88882
Tssr88883 9 40320914 to 40320949 35 - TSS region transcription start site region 88883
Tssr88884 9 40320954 to 40320979 25 - TSS region transcription start site region 88884
Tssr88885 9 40321126 to 40321137 11 - TSS region transcription start site region 88885
Tssr88886 9 40321161 to 40321172 11 - TSS region transcription start site region 88886
Tssr88887 9 40321181 to 40321190 9 - TSS region transcription start site region 88887
Tssr88888 9 40321191 to 40321202 11 - TSS region transcription start site region 88888
Tssr88889 9 40321247 to 40321252 5 - TSS region transcription start site region 88889
Tssr88890 9 40321256 to 40321267 11 - TSS region transcription start site region 88890
Tssr88891 9 40321270 to 40321293 23 - TSS region transcription start site region 88891
Tssr88892 9 40321312 to 40321317 5 - TSS region transcription start site region 88892
Tssr88893 9 40321329 to 40321341 12 - TSS region transcription start site region 88893
Tssr88894 9 40321447 to 40321487 40 - TSS region transcription start site region 88894
Tssr84440 9 40321738 to 40321751 13 + TSS region transcription start site region 84440
Tssr84441 9 40323414 to 40323458 44 + TSS region transcription start site region 84441
Tssr84442 9 40324531 to 40324544 13 + TSS region transcription start site region 84442
Tssr84443 9 40327255 to 40327258 3 + TSS region transcription start site region 84443
Tssr88895 9 40333260 to 40333301 41 - TSS region transcription start site region 88895
Cpgi21592 9 40333420 to 40333677 257 CpG island CpG island 21592
Tssr84444 9 40333452 to 40333463 11 + TSS region transcription start site region 84444
Tssr84445 9 40333470 to 40333473 3 + TSS region transcription start site region 84445
1700110K17Rik 9 40333472 to 40343337 9865 + antisense lncRNA gene RIKEN cDNA 1700110K17 gene
Tssr88896 9 40339580 to 40339612 32 - TSS region transcription start site region 88896
Tssr88897 9 40341497 to 40341536 39 - TSS region transcription start site region 88897
Tssr84446 9 40341553 to 40341590 37 + TSS region transcription start site region 84446
Gm48129 9 40341618 to 40342103 485 - sense intronic lncRNA gene predicted gene, 48129
Gm48127 9 40342308 to 40342938 630 - sense intronic lncRNA gene predicted gene, 48127
Tssr88898 9 40345216 to 40345221 5 - TSS region transcription start site region 88898
Tssr88899 9 40345240 to 40345255 15 - TSS region transcription start site region 88899
Tssr88900 9 40346115 to 40346131 16 - TSS region transcription start site region 88900
Tssr88901 9 40346189 to 40346200 11 - TSS region transcription start site region 88901
Tssr88902 9 40346205 to 40346233 28 - TSS region transcription start site region 88902
Tssr88903 9 40346295 to 40346337 42 - TSS region transcription start site region 88903
Gm48114 9 40363217 to 40366902 3685 - unclassified gene predicted gene, 48114
Tssr88904 9 40376121 to 40376139 18 - TSS region transcription start site region 88904
Tssr88905 9 40376213 to 40376263 50 - TSS region transcription start site region 88905
Tssr88906 9 40376332 to 40376358 26 - TSS region transcription start site region 88906
Tssr88907 9 40376359 to 40376415 56 - TSS region transcription start site region 88907
Tssr88908 9 40376426 to 40376444 18 - TSS region transcription start site region 88908
Tssr88909 9 40376830 to 40376847 17 - TSS region transcription start site region 88909
Tssr88910 9 40390394 to 40390401 7 - TSS region transcription start site region 88910
Cpgi21593 9 40391506 to 40391770 264 CpG island CpG island 21593