Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:37503548-38334612

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Msantd2 9 37489319 to 37524625 35306 + protein coding gene Myb/SANT-like DNA-binding domain containing 2
Cpgi21579 9 37527663 to 37528179 516 CpG island CpG island 21579
Tssr84396 9 37528047 to 37528058 11 + TSS region transcription start site region 84396
Tssr84397 9 37528071 to 37528148 77 + TSS region transcription start site region 84397
Esam 9 37528089 to 37538319 10230 + protein coding gene endothelial cell-specific adhesion molecule
Cpgi21580 9 37530276 to 37530697 421 CpG island CpG island 21580
Cpgi21581 9 37530932 to 37531323 391 CpG island CpG island 21581
Tssr84398 9 37531121 to 37531138 17 + TSS region transcription start site region 84398
Vsig2 9 37539255 to 37544205 4950 + protein coding gene V-set and immunoglobulin domain containing 2
Tssr84399 9 37539265 to 37539279 14 + TSS region transcription start site region 84399
Cpgi21582 9 37539842 to 37540078 236 CpG island CpG island 21582
Nrgn 9 37544493 to 37552745 8252 - protein coding gene neurogranin
Tssr88841 9 37544553 to 37544563 10 - TSS region transcription start site region 88841
Tssr88842 9 37544565 to 37544578 13 - TSS region transcription start site region 88842
Tssr84400 9 37544953 to 37544958 5 + TSS region transcription start site region 84400
Cpgi21583 9 37544965 to 37545318 353 CpG island CpG island 21583
Tssr88843 9 37544966 to 37545018 52 - TSS region transcription start site region 88843
Tssr84401 9 37544995 to 37545006 11 + TSS region transcription start site region 84401
Tssr88844 9 37545024 to 37545035 11 - TSS region transcription start site region 88844
Tssr84402 9 37545040 to 37545047 7 + TSS region transcription start site region 84402
Tssr88845 9 37545042 to 37545052 10 - TSS region transcription start site region 88845
Tssr88846 9 37545058 to 37545075 17 - TSS region transcription start site region 88846
Tssr84403 9 37545061 to 37545066 5 + TSS region transcription start site region 84403
Tssr88847 9 37545081 to 37545094 13 - TSS region transcription start site region 88847
Tssr88848 9 37545102 to 37545121 19 - TSS region transcription start site region 88848
Tssr84404 9 37545105 to 37545122 17 + TSS region transcription start site region 84404
Tssr88849 9 37545140 to 37545162 22 - TSS region transcription start site region 88849
Tssr84405 9 37545140 to 37545150 10 + TSS region transcription start site region 84405
Tssr88850 9 37545167 to 37545188 21 - TSS region transcription start site region 88850
Tssr84406 9 37545174 to 37545181 7 + TSS region transcription start site region 84406
Tssr88851 9 37545198 to 37545229 31 - TSS region transcription start site region 88851
Tssr84407 9 37545223 to 37545243 20 + TSS region transcription start site region 84407
Tssr84408 9 37545251 to 37545273 22 + TSS region transcription start site region 84408
Tssr88852 9 37545254 to 37545273 19 - TSS region transcription start site region 88852
Tssr88853 9 37545285 to 37545292 7 - TSS region transcription start site region 88853
Tssr88854 9 37545313 to 37545325 12 - TSS region transcription start site region 88854
Cpgi21584 9 37545936 to 37546116 180 CpG island CpG island 21584
Tssr84409 9 37545939 to 37545947 8 + TSS region transcription start site region 84409
Tssr88855 9 37546058 to 37546089 31 - TSS region transcription start site region 88855
Tssr88856 9 37546132 to 37546184 52 - TSS region transcription start site region 88856
Tssr88857 9 37546956 to 37546960 4 - TSS region transcription start site region 88857
Cpgi21585 9 37552405 to 37552889 484 CpG island CpG island 21585
Tssr88858 9 37552664 to 37552711 47 - TSS region transcription start site region 88858
Tssr88859 9 37552725 to 37552741 16 - TSS region transcription start site region 88859
Tssr88860 9 37552955 to 37552982 27 - TSS region transcription start site region 88860
Tssr88861 9 37553391 to 37553397 6 - TSS region transcription start site region 88861
Gm46107 9 37555256 to 37567479 12223 + lncRNA gene predicted gene, 46107
Tssr84410 9 37555614 to 37555628 14 + TSS region transcription start site region 84410
Tssr84411 9 37555637 to 37555643 6 + TSS region transcription start site region 84411
Tssr84412 9 37555645 to 37555656 11 + TSS region transcription start site region 84412
Tssr84413 9 37555671 to 37555688 17 + TSS region transcription start site region 84413
Tssr84414 9 37555693 to 37555704 11 + TSS region transcription start site region 84414
Spa17 9 37603290 to 37613722 10432 - protein coding gene sperm autoantigenic protein 17
Tssr88862 9 37607656 to 37607659 3 - TSS region transcription start site region 88862
Tssr2828 9 37609085 to 37609120 35 + TSS region transcription start site region 2828
D9Mit326 9 37611630 to 37611878 248 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 326
Cpgi21586 9 37613294 to 37614085 791 CpG island CpG island 21586
Tssr88863 9 37613542 to 37613553 11 - TSS region transcription start site region 88863
Tssr88864 9 37613578 to 37613626 48 - TSS region transcription start site region 88864
Tssr88865 9 37613715 to 37613728 13 - TSS region transcription start site region 88865
Tssr84415 9 37613806 to 37613858 52 + TSS region transcription start site region 84415
Siae 9 37613847 to 37648318 34471 + protein coding gene sialic acid acetylesterase
Tbrg1 9 37649182 to 37657312 8130 - protein coding gene transforming growth factor beta regulated gene 1
Cpgi21587 9 37656875 to 37657480 605 CpG island CpG island 21587
Tssr88866 9 37657155 to 37657164 9 - TSS region transcription start site region 88866
Tssr88867 9 37657189 to 37657273 84 - TSS region transcription start site region 88867
Tssr88868 9 37657274 to 37657285 11 - TSS region transcription start site region 88868
Panx3 9 37659902 to 37669222 9320 - protein coding gene pannexin 3
Tssr88869 9 37669158 to 37669167 9 - TSS region transcription start site region 88869
Tssr88870 9 37669170 to 37669226 56 - TSS region transcription start site region 88870
Gm8343 9 37685941 to 37686934 993 + pseudogene predicted gene 8343
Tpt1-ps5 9 37696515 to 37697030 515 + pseudogene tumor protein, translationally-controlled, pseudogene 5
Olfr160 9 37711348 to 37712280 932 - protein coding gene olfactory receptor 160
Olfr151 9 37729977 to 37731061 1084 - polymorphic pseudogene olfactory receptor 151
Olfr874 9 37745300 to 37747106 1806 + protein coding gene olfactory receptor 874
Olfr875 9 37772637 to 37773640 1003 + protein coding gene olfactory receptor 875
Olfr876 9 37803889 to 37804936 1047 + protein coding gene olfactory receptor 876
Gm24764 9 37822586 to 37822784 198 - snRNA gene predicted gene, 24764
Gm47005 9 37823137 to 37823371 234 + pseudogene predicted gene, 47005
Olfr877 9 37854820 to 37855755 935 + protein coding gene olfactory receptor 877
Olfr145 9 37896724 to 37903519 6795 + protein coding gene olfactory receptor 145
Gm6796 9 37911152 to 37911394 242 - pseudogene predicted pseudogene 6796
Olfr878 9 37918548 to 37919612 1064 + protein coding gene olfactory receptor 878
Olfr879-ps1 9 37941415 to 37942108 693 + pseudogene olfactory receptor 879, pseudogene 1
Edlmmq8 9 37941444 to 37941444 0 QTL extensor digitorum longus muscle mass QTL 8
Olfr880-ps1 9 37968355 to 37968583 228 + pseudogene olfactory receptor 880, pseudogene 1
Olfr881 9 37992492 to 37993439 947 + protein coding gene olfactory receptor 881
Gm45701 9 38000923 to 38001157 234 + pseudogene predicted gene 45701
Olfr882-ps1 9 38003057 to 38003888 831 + pseudogene olfactory receptor 882, pseudogene 1
Olfr883 9 38025808 to 38026737 929 + protein coding gene olfactory receptor 883
Olfr884 9 38046576 to 38048153 1577 + protein coding gene olfactory receptor 884
Olfr885 9 38061322 to 38062251 929 + protein coding gene olfactory receptor 885
Olfr886-ps1 9 38070092 to 38070748 656 + pseudogene olfactory receptor 886, pseudogene 1
Olfr887 9 38084838 to 38085767 929 + protein coding gene olfactory receptor 887
Olfr888 9 38108128 to 38109632 1504 + protein coding gene olfactory receptor 888
Olfr889 9 38115798 to 38116727 929 + protein coding gene olfactory receptor 889
Olfr890 9 38143137 to 38144081 944 + protein coding gene olfactory receptor 890
Olfr891 9 38179871 to 38180821 950 - protein coding gene olfactory receptor 891
Gm17798 9 38184793 to 38185827 1034 + pseudogene predicted gene, 17798
Olfr892-ps1 9 38189799 to 38190655 856 + polymorphic pseudogene olfactory receptor 892, pseudogene 1
Olfr893 9 38209052 to 38209993 941 + protein coding gene olfactory receptor 893
Olfr894 9 38218818 to 38219766 948 + protein coding gene olfactory receptor 894
Olfr143 9 38253419 to 38254360 941 + protein coding gene olfactory receptor 143
Olfr895 9 38268001 to 38269530 1529 + protein coding gene olfactory receptor 895
Olfr896-ps1 9 38291947 to 38292870 923 + pseudogene olfactory receptor 896, pseudogene 1
Olfr897-ps1 9 38308797 to 38309731 934 + polymorphic pseudogene olfactory receptor 897, pseudogene 1
Olfr25 9 38329492 to 38330559 1067 + protein coding gene olfactory receptor 25